BAC Information

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BAC

Clone NameB6Ng01-126B21
Chromosome12 (Build37)
Map Location 58,808,376 - 58,950,133
singlet/doubletdoublet
Overlap genenone
Upstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B21.bB6Ng01-126B21.g
ACCDH928571DH928572
length1,099948
definitionDH928571|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B21, 5' end.DH928572|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,808,376 - 58,809,490)(58,949,172 - 58,950,133)
sequence
gaattctgagactactctatagatagtgaagagtacagagtaatgggatc
caccagcaggggctgttgacagaaatttgttgatttgcacttgtgtttta
taggcctaaccatgtcttaaaaaatatggtgctgcaacagccctatttct
ccatcaaaatcttgtattttctaatcttcatgttcattgtctcacccttc
atcagtatggttggtttcaatgagaattagctctgtgatcgatcacccac
ctgtaagctctttgtgttctgtctcttacttttgtttcttctcctctgta
tcttctggtcttcccctcctcacttctgcaagggcgggtgctcttgtaga
ctccacattcccattgtcctaagcagacacactcctcagtctctgtgaaa
cttatccaaatctgcttagagcatccgtggatttagaagtcacagaggag
acagaggttgagaaaaatgatccacacagaagaatgcaacattcctaaga
gctagcccagcaagttcgtcttcctctagaaatgtagacaaatgcataat
taattttaacaaggcaattgttaagattgagcagtcaattaaaggatcat
tagaagggacctacaaaacatgtgtctttgaggataccttgccccccccc
ccccaatgcctgccaaacagtgggctgggcaaggaaggaaggaactcccg
tatgttatctcagttgtgtggaaaaaccaattcctggttgatgaagaact
tgcaaaacaacctgaataaataagaacaaaacggagttgcaaatattggt
gattttcaaggtgcctgcaccccatagcatttcatctgctcattttgcag
acaatgaaatgtcaggagggagaggccacagaactcatccaagtcacacc
tggaattagaaacctgccctggcagtcacacatttgtttgtttctgggtt
cacagtccttagtagctttgtgagcctctgagtctggattgatactatgt
cattcaagtgtcacctcctccccctgctttctcactgcctctcaacatct
ccatccactgagtacgtgcatgtgcattctttatggatagagttctaaa
gaattccacgacttcagaagtaaagggaaaagcataaagagggctgtgtt
taccaagtccctccttatatagtcctgcagatgtgtgtcttgacctctat
gtaaggtaaggtttttttgttttttgttttgtctaaccagtgagtaatca
gtccacactcacatgtgtcaacaggggctttcattgctttctgatgtagt
tcattttgtcttttcagagcaaatacaattcagagttcctcttctataga
gttgaactataccctcttctggtaatcactgttggctccaatttcatgct
ttagctaaattagttaatctaattcttttctgtataagagctcttcaaat
gctcaggctcctttttttctcccctttctctagtcactaggttttcttcc
tataaaccaaataatcttatttttccagtgttgtctaaattacattgtta
taggtccttagcctctttctaagctgttgaaataaccaaagtctcatcat
ttgtaaaaagaaccaaatacaatactgcaggtgtgatctaaagagttctg
agttgaatctcattatcagtattcttgtctgagacattacatctgcattt
gggcagatcaggagcagattcacaattttatgcccactccttcatggtgc
tcactcactcagcattttctgtagttacacagaggcaactaaatcttgta
aaagtgagctaggatgaagacacatgttctatccctgctccttatttatg
tgacttatttccacattcagttgttcctagatcagaaaggcctgttttta
cttgtttatcttaatgaattcttctctttcacagttctattccatatcaa
gtcatgagcaaacatcagcaaacagaaagacaatagatttcatattctcc
ctgtcagtgtttctgatgacaacagtcaaatctgcatctagcagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58808376_58809490
seq2: B6Ng01-126B21.b_48_1146

seq1  GAATTCTGAGACTACTCTATAGATAGTGAAGAGTACAGAGTAATGGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACTACTCTATAGATAGTGAAGAGTACAGAGTAATGGGATC  50

seq1  CACCAGCAGGGGCTGTTGACAGAAATTTGTTGATTTGCACTTGTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAGGGGCTGTTGACAGAAATTTGTTGATTTGCACTTGTGTTTTA  100

seq1  TAGGCCTAACCATGTCTTAAAAAATATGGTGCTGCAACAGCCCTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTAACCATGTCTTAAAAAATATGGTGCTGCAACAGCCCTATTTCT  150

seq1  CCATCAAAATCTTGTATTTTCTAATCTTCATGTTCATTGTCTCACCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAATCTTGTATTTTCTAATCTTCATGTTCATTGTCTCACCCTTC  200

seq1  ATCAGTATGGTTGGTTTCAATGAGAATTAGCTCTGTGATCGATCACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATGGTTGGTTTCAATGAGAATTAGCTCTGTGATCGATCACCCAC  250

seq1  CTGTAAGCTCTTTGTGTTCTGTCTCTTACTTTTGTTTCTTCTCCTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCTCTTTGTGTTCTGTCTCTTACTTTTGTTTCTTCTCCTCTGTA  300

seq1  TCTTCTGGTCTTCCCCTCCTCACTTCTGCAAGGGCGGGTGCTCTTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTCTTCCCCTCCTCACTTCTGCAAGGGCGGGTGCTCTTGTAGA  350

seq1  CTCCACATTCCCATTGTCCTAAGCAGACACACTCCTCAGTCTCTGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTCCCATTGTCCTAAGCAGACACACTCCTCAGTCTCTGTGAAA  400

seq1  CTTATCCAAATCTGCTTAGAGCATCCGTGGATTTAGAAGTCACAGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCAAATCTGCTTAGAGCATCCGTGGATTTAGAAGTCACAGAGGAG  450

seq1  ACAGAGGTTGAGAAAAATGATCCACACAGAAGAATGCAACATTCCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTTGAGAAAAATGATCCACACAGAAGAATGCAACATTCCTAAGA  500

seq1  GCTAGCCCAGCAAGTTCGTCTTCCTCTAGAAATGTAGACAAATGCATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCCAGCAAGTTCGTCTTCCTCTAGAAATGTAGACAAATGCATAAT  550

seq1  TAATTTTAACAAGGCAATTGTTAAGATTGAGCAGTCAATTAAAGGATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAACAAGGCAATTGTTAAGATTGAGCAGTCAATTAAAGGATCAT  600

seq1  TAGAAGGGACCTACAAAACATGTGTCTTTGAGGATACCTTGCCCCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGACCTACAAAACATGTGTCTTTGAGGATACCTTGCCCCCCCCC  650

seq1  CCCCAATGCCTGCCAAACAGTGGGCTGGGCAAGGAAGGAAGGAACTCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGCCTGCCAAACAGTGGGCTGGGCAAGGAAGGAAGGAACTCCCG  700

seq1  TATGTTATCTCAGTTGTGTGGAAAAACCAATTCCTGGTTGATGAAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATCTCAGTTGTGTGGAAAAACCAATTCCTGGTTGATGAAGAACT  750

seq1  TGCAAAACAACCTGAATAAATAAGAACAAAACGGAGTTGCAAATATTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACAACCTGAATAAATAAGAACAAAACGGAGTTGCAAATATTGGT  800

seq1  GATTTTCAAGGTGCCTGCACCCCATAGCATTTCATCTGCTCATTTTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAGGTGCCTGCACCCCATAGCATTTCATCTGCTCATTTTGCAG  850

seq1  ACAATGAAATGTCAGGAGGGAGAGGCCACAGAACTCATCCAAGTCACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAATGTCAGGAGGGAGAGGCCACAGAACTCATCCAAGTCACACC  900

seq1  TGGAATTAGAAACCTGCCCTGGCAGTCACACATTTGTTTGTTTCTGGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAGAAACCTGCCCTGGCAGTCACACATTTGTTTGTTTCTGGGTT  950

seq1  CACAGTCCTTAGGTAGCTTTGTGAAGCCCTCTGAGTCTGGATTGAATACT  1000
      ||||||||||| ||||||||||||   ||||||||||||||||| |||||
seq2  CACAGTCCTTA-GTAGCTTTGTGA--GCCTCTGAGTCTGGATTG-ATACT  996

seq1  ATGTCATTTCAAAGTGTCACCTCCTCCCCCTTGCTTTCCTTCACCTGCCT  1050
      ||||||||   ||||||||||||||||||| |||||||  ||| ||||||
seq2  ATGTCATT--CAAGTGTCACCTCCTCCCCC-TGCTTTC--TCA-CTGCCT  1040

seq1  CTCAACATTCCTTCCAT-CACTGAGGTAACGTGCATGTGCATTCTTTATG  1099
      ||||||||    ||||| |||||||   ||||||||||||||||||||||
seq2  CTCAACAT---CTCCATCCACTGAG--TACGTGCATGTGCATTCTTTATG  1085

seq1  GATAGAGTTTCCTAAA  1115
      |||||||||  |||||
seq2  GATAGAGTT--CTAAA  1099

seq1: chr12_58949172_58950133
seq2: B6Ng01-126B21.g_65_1012 (reverse)

seq1  CCTACTTGCTAGATGCCAGATTTGGACTGTTGTCAATCCAGAAACAACTT  50
      ||||| ||||||||| ||||||| |||||||||||   ||||||||   |
seq2  CCTAC-TGCTAGATG-CAGATTT-GACTGTTGTCA--TCAGAAACA--CT  43

seq1  GACAGGGAAGAATATGAAATTCTATTGTCCTTTCTGTTTGGCTGATGTTT  100
      ||||||| ||||||||||| |||||||| |||||||||| ||||||| ||
seq2  GACAGGG-AGAATATGAAA-TCTATTGT-CTTTCTGTTT-GCTGATG-TT  88

seq1  TGCTCAATGACTTGATATGGAATAGAACTGTGAAAGAGAAGAATTCATTA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTC-ATGACTTGATATGGAATAGAACTGTGAAAGAGAAGAATTCATTA  137

seq1  AGATAAACAAGTAAAAACAGGCCTTTCTGATCTAAGGAACAACTGAATGT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATAAACAAGTAAAAACAGGCCTTTCTGATCT-AGGAACAACTGAATGT  186

seq1  GGAAATAAGTCACATAAATAAGGAGCAGGGATAGAACATGTGTCTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGTCACATAAATAAGGAGCAGGGATAGAACATGTGTCTTCATC  236

seq1  CTAGCTCACTTTTACAAGATTTAGTTGCCTCTGTGTAACTACAGAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCACTTTTACAAGATTTAGTTGCCTCTGTGTAACTACAGAAAATG  286

seq1  CTGAGTGAGTGAGCACCATGAAGGAGTGGGCATAAAATTGTGAATCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAGTGAGCACCATGAAGGAGTGGGCATAAAATTGTGAATCTGCT  336

seq1  CCTGATCTGCCCAAATGCAGATGTAATGTCTCAGACAAGAATACTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTGCCCAAATGCAGATGTAATGTCTCAGACAAGAATACTGATAA  386

seq1  TGAGATTCAACTCAGAACTCTTTAGATCACACCTGCAGTATTGTATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCAACTCAGAACTCTTTAGATCACACCTGCAGTATTGTATTTGG  436

seq1  TTCTTTTTACAAATGATGAGACTTTGGTTATTTCAACAGCTTAGAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTACAAATGATGAGACTTTGGTTATTTCAACAGCTTAGAAAGAG  486

seq1  GCTAAGGACCTATAACAATGTAATTTAGACAACACTGGAAAAATAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGACCTATAACAATGTAATTTAGACAACACTGGAAAAATAAGATT  536

seq1  ATTTGGTTTATAGGAAGAAAACCTAGTGACTAGAGAAAGGGGAGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTATAGGAAGAAAACCTAGTGACTAGAGAAAGGGGAGAAAAAA  586

seq1  AGGAGCCTGAGCATTTGAAGAGCTCTTATACAGAAAAGAATTAGATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGAGCATTTGAAGAGCTCTTATACAGAAAAGAATTAGATTAAC  636

seq1  TAATTTAGCTAAAGCATGAAATTGGAGCCAACAGTGATTACCAGAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGCTAAAGCATGAAATTGGAGCCAACAGTGATTACCAGAAGAGG  686

seq1  GTATAGTTCAACTCTATAGAAGAGGAACTCTGAATTGTATTTGCTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTCAACTCTATAGAAGAGGAACTCTGAATTGTATTTGCTCTGAA  736

seq1  AAGACAAAATGAACTACATCAGAAAGCAATGAAAGCCCCTGTTGACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATGAACTACATCAGAAAGCAATGAAAGCCCCTGTTGACACAT  786

seq1  GTGAGTGTGGACTGATTACTCACTGGTTAGACAAAACAAAAAACAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGGACTGATTACTCACTGGTTAGACAAAACAAAAAACAAAAAA  836

seq1  ACCTTACCTTACATAGAGGTCAAGACACACATCTGCAGGACTATATAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCTTACATAGAGGTCAAGACACACATCTGCAGGACTATATAAGG  886

seq1  AGGGACTTGGTAAACACAGCCCTCTTTATGCTTTTCCCTTTACTTCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTGGTAAACACAGCCCTCTTTATGCTTTTCCCTTTACTTCTGAA  936

seq1  GTCGTGGAATTC  962
      ||||||||||||
seq2  GTCGTGGAATTC  948