BAC Information

Click to search

BAC

Clone NameB6Ng01-126D13
Chromosome12 (Build37)
Map Location 87,224,953 - 87,385,839
singlet/doubletdoublet
Overlap geneTtll5
Upstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D13.bB6Ng01-126D13.g
ACCDH928650DH928651
length1,199848
definitionDH928650|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D13, 5' end.DH928651|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,224,953 - 87,226,157)(87,385,194 - 87,385,839)
sequence
gaattctcttttggacccattataaagactttcattttgctcttaaactc
aaatcctaggctgaggtgaaaacattttcattacaaaaaaggacctcagt
gacagtggcacttcccagccagcacgttccgttgcctgggactgtggctt
cagtgcggctcttatttctcaggaggcttagtacattttctccaaaaccc
atggcgtgctgtgtacaatgatctcttaggtctcagtgagactgtgtttc
tactccccaccactttcttcaatagtcatcttttatcagatttttttccc
ttaatgtatccttaataaacttttcttaacgagaatttctgtttattttt
tggcaggtggttggttcttctgttactgatatgctagctcttctctttgc
agtgaactaaataaatttattttctttcttaaaaaatgaattcttgttat
ttttactgtgcctggtagctttgctatgactcagtcgggaggccaggaga
gggcagctcagttctttattggcttttacttatacataattttctctttc
ctccccctcagtggttcttaattatttgtgtgtctttctgtgtgtgtgtg
tccatgtgtttatgtatgtacacgtgtgtacaaaagtgaagcccacacat
agtgtctgttttccttagctactgtctactttgcctgttatgattattat
tttttgaacaaagtcttgcactgaaactggaggtcactgctttcagctag
ccagcaagccctaactgtcctttgatctatgcctttccagtacagagttc
ataggtgcatactctcatgcccatcttgttatgcgggtgctgggggcctg
agctcaagatttaggaaaacattttaactgaaccatctccttttcccttt
gtttttctaaatgattttacttatgggaatagattatttcagccttaggt
ttctaattactatggtaaacaccatgaccaaagcagcttggggaggaaaa
ggttttttttagcttacacacttaacattctcagtccatcactggaggga
agtcggagtgggaactgaaggcagaagccaggaagagcattgttactggc
ctgcaccctgtcctgtccaggctactttcttacacaccagagcacctacg
cagggtgacacatacctctcccatcagcataaccagaaatgcactattg
gaattctattgacaccaggcatgtgtgtggtacacatacacaaaggcaaa
atgctcaaggacataataaaaacatttaaaaattgaaaatgtgtggatga
atttacagttttgtgtgtaatattattttgaactcataaacaatctgagt
ttaaaagctgttacagtaactacaatctcatttcctccaatgcttctcct
tgtttgtacatgaggtgcgtgtgtgggaagtatcatgtatgtatgcaggc
atgttccaatgtggatatcagaagagggcattgtgccctactgctgttca
tttgtactttttttgagtcaggtctctcattgaacctatgtgtgccggtt
aggctgggatcttcctgtctctgcctaccaatggtggagttataggcgtg
tgtggttatgcttggtttgtatgttggtgtcttagttagggttttactgc
tgtgaacagacacctgaccaaggcaagtcttataaaggacatttaattgg
ggctggcttacaggcatggtgcaggaggagctgagagttctacatcttca
tctgaaagttattaatggaaaactgacttccagctagctatgatgaaggt
ctttaaagtccacacccacagtaacacaccgactgcaacagggtcacacc
ctctaataagtgccacttttctgggccaagcatctacagtgggtactaag
ggttcaaactcaagtcctcttgctttcactgcaagtgttcttattcttgg
cccaggccttttcttagaaagaagagagaatggagaaagaaaaagaataa
aagaaagatggaataaaaagagaaagaaagaaaggagggagagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87224953_87226157
seq2: B6Ng01-126D13.b_50_1248

seq1  GAATTCTCTTTTGGACCCATTATAAAGACTTTCATTTTGCTCTTAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGGACCCATTATAAAGACTTTCATTTTGCTCTTAAACTC  50

seq1  AAATCCTAGGCTGAGGTGAAAACATTTTCATTACAAAAAAGGACCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAGGCTGAGGTGAAAACATTTTCATTACAAAAAAGGACCTCAGT  100

seq1  GACAGTGGCACTTCCCAGCCAGCACGTTCCGTTGCCTGGGACTGTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGCACTTCCCAGCCAGCACGTTCCGTTGCCTGGGACTGTGGCTT  150

seq1  CAGTGCGGCTCTTATTTCTCAGGAGGCTTAGTACATTTTCTCCAAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGGCTCTTATTTCTCAGGAGGCTTAGTACATTTTCTCCAAAACCC  200

seq1  ATGGCGTGCTGTGTACAATGATCTCTTAGGTCTCAGTGAGACTGTGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGTGCTGTGTACAATGATCTCTTAGGTCTCAGTGAGACTGTGTTTC  250

seq1  TACTCCCCACCACTTTCTTCAATAGTCATCTTTTATCAGATTTTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCCACCACTTTCTTCAATAGTCATCTTTTATCAGATTTTTTTCCC  300

seq1  TTAATGTATCCTTAATAAACTTTTCTTAACGAGAATTTCTGTTTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTATCCTTAATAAACTTTTCTTAACGAGAATTTCTGTTTATTTTT  350

seq1  TGGCAGGTGGTTGGTTCTTCTGTTACTGATATGCTAGCTCTTCTCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGGTTGGTTCTTCTGTTACTGATATGCTAGCTCTTCTCTTTGC  400

seq1  AGTGAACTAAATAAATTTATTTTCTTTCTTAAAAAATGAATTCTTGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTAAATAAATTTATTTTCTTTCTTAAAAAATGAATTCTTGTTAT  450

seq1  TTTTACTGTGCCTGGTAGCTTTGCTATGACTCAGTCGGGAGGCCAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTGCCTGGTAGCTTTGCTATGACTCAGTCGGGAGGCCAGGAGA  500

seq1  GGGCAGCTCAGTTCTTTATTGGCTTTTACTTATACATAATTTTCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTCAGTTCTTTATTGGCTTTTACTTATACATAATTTTCTCTTTC  550

seq1  CTCCCCCTCAGTGGTTCTTAATTATTTGTGTGTCTTTCTGTGTGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCAGTGGTTCTTAATTATTTGTGTGTCTTTCTGTGTGTGTGTG  600

seq1  TCCATGTGTTTATGTATGTACACGTGTGTACAAAAGTGAAGCCCACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGTTTATGTATGTACACGTGTGTACAAAAGTGAAGCCCACACAT  650

seq1  AGTGTCTGTTTTCCTTAGCTACTGTCTACTTTGCCTGTTATGATTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGTTTTCCTTAGCTACTGTCTACTTTGCCTGTTATGATTATTAT  700

seq1  TTTTTGAACAAAGTCTTGCACTGAAACTGGAGGTCACTGCTTTCAGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAACAAAGTCTTGCACTGAAACTGGAGGTCACTGCTTTCAGCTAG  750

seq1  CCAGCAAGCCCTAACTGTCCTTTGATCTATGCCTTTCCAGTACAGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGCCCTAACTGTCCTTTGATCTATGCCTTTCCAGTACAGAGTTC  800

seq1  ATAGGTGCATACTCTCATGCCCATCTTGTTATGCGGGTGCTGGGGGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGCATACTCTCATGCCCATCTTGTTATGCGGGTGCTGGGGGCCTG  850

seq1  AGCTCAAGATCTAGGAAAACATTTTAACTGAACCATCTCCCTTTCCCTTT  900
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AGCTCAAGATTTAGGAAAACATTTTAACTGAACCATCTCCTTTTCCCTTT  900

seq1  GTTTCTCCTAAATGATTTTACTTAT-GGAATAGATTATTTCAGCCTTAGG  949
      |||| | |||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTT-TTCTAAATGATTTTACTTATGGGAATAGATTATTTCAGCCTTAGG  949

seq1  TTTCT-ATTACTATGGTAAACACCATGACCAAAAGCAGCTTGGGGAGGAA  998
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCTAATTACTATGGTAAACACCATGACC-AAAGCAGCTTGGGGAGGAA  998

seq1  AAGGGTTTTTTTAGCTT--ACACTTACACA-TCCCAGTCCATCACT-GAG  1044
      |||| ||||||||||||  ||||||| ||| || |||||||||||| |||
seq2  AAGGTTTTTTTTAGCTTACACACTTA-ACATTCTCAGTCCATCACTGGAG  1047

seq1  GGAAGTCGGAGTGGGAACTGAAGGCAGAAGCCAGGAAGGAGCATTGTTTA  1094
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GGAAGTCGGAGTGGGAACTGAAGGCAGAAGCCAGGAA-GAGCATTG-TTA  1095

seq1  CTGGCCTGCACCCCTGTCCTGCTCAGCCTACTTTCTTACACAACCCAGGA  1144
      |||||||||| ||||||||||  ||| |||||||||||||||  ||| ||
seq2  CTGGCCTGCA-CCCTGTCCTGTCCAGGCTACTTTCTTACACA--CCA-GA  1141

seq1  GCACCTACGCAGGGGTGACAC-TACCTC-CACATCAGTCATCAGCCAAGA  1192
      ||||||||||| ||||||||| |||||| | |||||| ||| | |||   
seq2  GCACCTACGCA-GGGTGACACATACCTCTCCCATCAG-CAT-AACCA--G  1186

seq1  AAATGCACTATTG  1205
      |||||||||||||
seq2  AAATGCACTATTG  1199

seq1: chr12_87385194_87385839
seq2: B6Ng01-126D13.g_282_916 (reverse)

seq1  CCCCCCTCTCCCTTCCTTTCTTTTCTTTTCTCTTCTTTTCTTTCCATCTT  50
      |||||||||||| ||||||| |||||||     ||||||  |||||||||
seq2  CCCCCCTCTCCC-TCCTTTC-TTTCTTT----CTCTTTTTATTCCATCTT  44

seq1  TCTTTTTCTTTCTTTTTTCTTTCTTCCTTTCTCTCTTTCTTTCTTAAGAA  100
      ||||||   ||| |||||||||| ||| ||||||| ||||||| ||||||
seq2  TCTTTT--ATTC-TTTTTCTTTC-TCCATTCTCTC-TTCTTTC-TAAGAA  88

seq1  AAGGCCTGGGGCCAAGAATAAGAACACTTGCAGTGAAAGCAAGAGGACTT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCT-GGGCCAAGAATAAGAACACTTGCAGTGAAAGCAAGAGGACTT  137

seq1  GAGTTTGAACCCTTAGTACCCACTGTAGATGCTTGGCCCAG-AAAGTGGC  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTTTGAACCCTTAGTACCCACTGTAGATGCTTGGCCCAGAAAAGTGGC  187

seq1  ACTTATTAGAGGGTGTGACCCTGTTGCAGTCGGTGTGTTACTGTGGGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTAGAGGGTGTGACCCTGTTGCAGTCGGTGTGTTACTGTGGGTGT  237

seq1  GGACTTT-AAGACCTTCATCATAGCTAGCTGGAAGTCAGTTTTCCATTAA  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAAAGACCTTCATCATAGCTAGCTGGAAGTCAGTTTTCCATTAA  287

seq1  TAACTTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCT  337

seq1  GTAAGCCAGCCCCAATTAAATGTCCTTTATAAGACTTGCCTTGGTCAGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAGCCCCAATTAAATGTCCTTTATAAGACTTGCCTTGGTCAGGT  387

seq1  GTCTGTTCACAGCAGTAAAACCCTAACTAAGACACCAACATACAAACCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACAGCAGTAAAACCCTAACTAAGACACCAACATACAAACCAA  437

seq1  GCATAACCACACACGCCTATAACTCCACCATTGGTAGGCAGAGACAGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCACACACGCCTATAACTCCACCATTGGTAGGCAGAGACAGGAA  487

seq1  GATCCCAGCCTAACCGGCACACATAGGTTCAATGAGAGACCTGACTCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCCTAACCGGCACACATAGGTTCAATGAGAGACCTGACTCAAA  537

seq1  AAAAGTACAAATGAACAGCAGTAGGGCACAATGCCCTCTTCTGATATCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACAAATGAACAGCAGTAGGGCACAATGCCCTCTTCTGATATCCA  587

seq1  CATTGGAACATGCCTGCATACATACATGATACTTCCCACACACGCACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAACATGCCTGCATACATACATGATACTTCCCACACACGCACC  635