BAC Information

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BAC

Clone NameB6Ng01-127O10
Chromosome12 (Build37)
Map Location 115,225,214 - 115,261,329
singlet/doubletdoublet
Overlap geneIgh, Ighv14-2, Ighv4-2
Upstream geneBrf1, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1
Downstream geneIghv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O10.bB6Ng01-127O10.g
ACCDH929894DH929895
length1,148659
definitionDH929894|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O10, 5' end.DH929895|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,260,156 - 115,261,329)(115,225,214 - 115,225,866)
sequence
gaattctctgagatcattccacaatagaatgtatctatcacagctgagta
ggaaagtgagtcatctccaaggagctcatttacccactgtagctcttcct
gcataatgtatgctagctcaccaagtgcatgacccacctgaaagctatga
cattgaatgactgctgaaaaaaattgaatcctttctttctgtgacctctt
tgagattacctatgtactagtggatgactcccctacccatatgcattata
ttacattaatttgactcagtgacttactcattcataaaacaaaataaatc
agaatattggcagtgagacctgttctattgtgaggttctaagcagagatg
ggggaagtagaaggttaatatatgttcataatatattggatcatgaatga
gaatttgaaggaatttaaattatttaaaaatgaaaataacaattttacat
atgttaagaatttcttacagatctatattataaatagtgtattttcccta
tggaatttacatatccttaaattgcttctactactccaagtagtccattt
ctttccagtagagaatttcatttctatttcattacatgcttccatacaaa
actgtatatcactatgtcatatgaaaggactacaaatggaacattacata
atacatgtatttctaagaaagtcttaacttactggagaaaatcattacaa
attatatccattttttaaacagtaatgtaagtacctcattccttaaattt
ataaaattctgctgtgttatacacatttcaatctattttttaatcactga
tttgtttacagaaatgtaatctgattctataatgttgttattataaaaaa
tgtaacagtaatgatttgtgctcacatatagaaacaggattcatttattg
atgatgctttgcaagttgaaatatatagcttttggaaatggcctttctcc
cacatttaaaacattacacaacacacatctctgtcttctgctctcctcct
atactctgtctcttctctctccctcttttgtatgtgtgtgtgtgcaacat
tattgtttatcagtatatctgctgtctcatgactctagtatcatttataa
cgtttatcacttgcatattatttcagcaaattgtcctaagcttaaaaa
gaattcatcctctttatgaatagcaaatattaacacttaacttcttttac
tatacccaaccttactttgtctgagattccgaaataatcaacttttataa
gcttagaaaacgcacaactctaattgaagttattttctcttccatgctcc
tgattaatgaatgcatatgtatttgttttatgataatcacttgctaaaaa
gaaaaaaataggattaaaaaaccttatgaaacaaataccaaaaattgttg
aaaataccatatgggtattggttgataaataatgtgtttgtagtattttt
tattacttgggtcagttggatgagtaaaaaggaatcacccttttaaaact
aagctaacgatacctataaagtatttttccagggtatttactatgttgtc
caatgcatacagagtaaagttctttgttaaggggaatacacatacacaga
gatagcagagggggtgagggagagaaagagacaagagaccaaatacgtgc
aagatactaattggaaaaaaagacacagggagaatgaaatagagaattca
aatctgaacttgccccttttttaaaatgatataaagtgacttctcatttt
tgactcttaaattgctttcactgtggggaattcacccattttctgaagtt
tctgtacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115260156_115261329
seq2: B6Ng01-127O10.b_49_1196 (reverse)

seq1  TTTTATAAGCCTTATGACAATGTTTTGCTGAAATAAATAATGCAAGTTTG  50
       ||| |||| |||| |||||   |||||||||||||   ||||||||   
seq2  -TTTTTAAG-CTTAGGACAA---TTTGCTGAAATAA--TATGCAAGT---  40

seq1  AATAAACGTTATAAAATGAATACCTAGAGTCATTGAAGACAGCAGATATT  100
       ||||||||||| ||||| ||| ||||||||||   |||||||||||| |
seq2  GATAAACGTTAT-AAATG-ATA-CTAGAGTCAT--GAGACAGCAGATA-T  84

seq1  ACTTGATAAACAATAATGTTTGCAACACACACACATACAAAAAGAGGGAG  150
      || ||||||||||||||| |||| |||||||||||||| |||||||||||
seq2  AC-TGATAAACAATAATG-TTGC-ACACACACACATAC-AAAAGAGGGAG  130

seq1  AGAGAAAGAGACAGGAGTAATAGGAGGAGGAGCAGAAGGACAGAGATGTG  200
      |||| |||||||| |||| ||||||||| |||||||| ||||||||||||
seq2  AGAG-AAGAGACA-GAGT-ATAGGAGGA-GAGCAGAA-GACAGAGATGTG  175

seq1  TTGTTGTGTAATGTTTTAAATGTGGGAGAAAGGCCATTTCCAAAAGCTAT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTTGTGTAATGTTTTAAATGTGGGAGAAAGGCCATTTCCAAAAGCTAT  224

seq1  ATATTTCAACTTGCAAAGCATCATCAATAAATGAATCCTGTTTCTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAACTTGCAAAGCATCATCAATAAATGAATCCTGTTTCTATATG  274

seq1  TGAGCACAAATCATTACTGTTACATTTTTTATAATAACAACATTATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAATCATTACTGTTACATTTTTTATAATAACAACATTATAGAA  324

seq1  TCAGATTACATTTCTGTAAACAAATCAGTGATTAAAAAATAGATTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTACATTTCTGTAAACAAATCAGTGATTAAAAAATAGATTGAAAT  374

seq1  GTGTATAACACAGCAGAATTTTATAAATTTAAGGAATGAGGTACTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAACACAGCAGAATTTTATAAATTTAAGGAATGAGGTACTTACAT  424

seq1  TACTGTTTAAAAAATGGATATAATTTGTAATGATTTTCTCCAGTAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTAAAAAATGGATATAATTTGTAATGATTTTCTCCAGTAAGTTA  474

seq1  AGACTTTCTTAGAAATACATGTATTATGTAATGTTCCATTTGTAGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTTAGAAATACATGTATTATGTAATGTTCCATTTGTAGTCCTT  524

seq1  TCATATGACATAGTGATATACAGTTTTGTATGGAAGCATGTAATGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGACATAGTGATATACAGTTTTGTATGGAAGCATGTAATGAAATA  574

seq1  GAAATGAAATTCTCTACTGGAAAGAAATGGACTACTTGGAGTAGTAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATTCTCTACTGGAAAGAAATGGACTACTTGGAGTAGTAGAAG  624

seq1  CAATTTAAGGATATGTAAATTCCATAGGGAAAATACACTATTTATAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAGGATATGTAAATTCCATAGGGAAAATACACTATTTATAATAT  674

seq1  AGATCTGTAAGAAATTCTTAACATATGTAAAATTGTTATTTTCATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTAAGAAATTCTTAACATATGTAAAATTGTTATTTTCATTTTTA  724

seq1  AATAATTTAAATTCCTTCAAATTCTCATTCATGATCCAATATATTATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAAATTCCTTCAAATTCTCATTCATGATCCAATATATTATGAA  774

seq1  CATATATTAACCTTCTACTTCCCCCATCTCTGCTTAGAACCTCACAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTAACCTTCTACTTCCCCCATCTCTGCTTAGAACCTCACAATAG  824

seq1  AACAGGTCTCACTGCCAATATTCTGATTTATTTTGTTTTATGAATGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCTCACTGCCAATATTCTGATTTATTTTGTTTTATGAATGAGTA  874

seq1  AGTCACTGAGTCAAATTAATGTAATATAATGCATATGGGTAGGGGAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAGTCAAATTAATGTAATATAATGCATATGGGTAGGGGAGTCA  924

seq1  TCCACTAGTACATAGGTAATCTCAAAGAGGTCACAGAAAGAAAGGATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGTACATAGGTAATCTCAAAGAGGTCACAGAAAGAAAGGATTCA  974

seq1  ATTTTTTTCAGCAGTCATTCAATGTCATAGCTTTCAGGTGGGTCATGCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCAGCAGTCATTCAATGTCATAGCTTTCAGGTGGGTCATGCAC  1024

seq1  TTGGTGAGCTAGCATACATTATGCAGGAAGAGCTACAGTGGGTAAATGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGCTAGCATACATTATGCAGGAAGAGCTACAGTGGGTAAATGAG  1074

seq1  CTCCTTGGAGATGACTCACTTTCCTACTCAGCTGTGATAGATACATTCTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGAGATGACTCACTTTCCTACTCAGCTGTGATAGATACATTCTA  1124

seq1  TTGTGGAATGATCTCAGAGAATTC  1174
      ||||||||||||||||||||||||
seq2  TTGTGGAATGATCTCAGAGAATTC  1148

seq1: chr12_115225214_115225866
seq2: B6Ng01-127O10.g_70_728

seq1  GAATTCAT-TTCTTTATGAATAGCAAATATTAACACTTAACTTCTTTTAC  49
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCTTTATGAATAGCAAATATTAACACTTAACTTCTTTTAC  50

seq1  TATACCCAACCTTACTTTGTCTGAGATTCCGAAATAATCAACTTTTATAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAACCTTACTTTGTCTGAGATTCCGAAATAATCAACTTTTATAA  100

seq1  GCTTAGAAAACGCACAACTCTAATTGAAGTTATTTTCTCTTCCATGCTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAAACGCACAACTCTAATTGAAGTTATTTTCTCTTCCATGCTCC  150

seq1  TGATTAATGAATGCATATGTATTTGTTTTATGATAATCACTTGCTAAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATGAATGCATATGTATTTGTTTTATGATAATCACTTGCTAAAAA  200

seq1  GAAAAAAATAGGATTAAAAAACCTTATGAAACAAATACCAAAAATTGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAGGATTAAAAAACCTTATGAAACAAATACCAAAAATTGTTG  250

seq1  AAAATACCATATGGGTATTGGTTGATAAATAATGTGTTTGTAGTATTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCATATGGGTATTGGTTGATAAATAATGTGTTTGTAGTATTTTT  300

seq1  TATTACTTGGGTCAGTTGGATGAGTAAAAAGGAATCACCCTTTTAAAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTGGGTCAGTTGGATGAGTAAAAAGGAATCACCCTTTTAAAACT  350

seq1  AAGCTAACGATACCTATAAAGTATTTTTCCAGGGTATTTACTATGTTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACGATACCTATAAAGTATTTTTCCAGGGTATTTACTATGTTGTC  400

seq1  CAATGCATACAGAGTAAAGTTCTTTGTTAAGGGGAATACACATACACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATACAGAGTAAAGTTCTTTGTTAAGGGGAATACACATACACAGA  450

seq1  GATAGCAGAGGGGGTGAGGGAGAGAAAGAGACAAGAGACCAAATACGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGAGGGGGTGAGGGAGAGAAAGAGACAAGAGACCAAATACGTGC  500

seq1  AAGATACTAATTGGAAAAAAAGACACAGGGAGAATGAAATAGAGAATTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTAATTGGAAAAAAAGACACAGGGAGAATGAAATAGAGAATTCA  550

seq1  AATCTGAACTTGCCC--TTTTTAAAATGATATAAAGTGACTTCTCA-TTT  596
      |||||||||||||||  ||||||||||||||||||||||||||||| |||
seq2  AATCTGAACTTGCCCCTTTTTTAAAATGATATAAAGTGACTTCTCATTTT  600

seq1  TGACTC-TAAATTGCTTTCACTGTGGGGAATTCACCCA-TTTCTGAAGTT  644
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACTCTTAAATTGCTTTCACTGTGGGGAATTCACCCATTTTCTGAAGTT  650

seq1  TCTGTACCT  653
      |||||||||
seq2  TCTGTACCT  659