BAC Information

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BAC

Clone NameB6Ng01-128L11
Chromosome12 (Build37)13 (Build37)
Map Location 32,631,616 - 32,631,846106,266,174 - 106,267,206
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L11.bB6Ng01-128L11.g
ACCDH930492DH930493
length4921,027
definitionDH930492|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L11, 5' end.DH930493|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(106,266,174 - 106,267,206)
sequence
tttgttttttaatggggttaaacatgtaactccatggaaggagttacaga
gacaaaatttggagctgagatgaaaggatggaccatctagagactgctat
acttggggatacatcccataatcagcctccaaacgctgacatcattgcat
acactagcaagattttgctgaaaggacccagatatagctgtctcttgtga
ggctgtgccggggcctagcaaatacagaagtggatgctcacaatcagcta
ttggatggatcacagggcccccaatggaggagctagagaaagtacctaag
gagctagagggtctgcaaccctataggttgaacaacaatatgaactaacc
agtacccccccagagcttgtgtttctagctgcatatgtatcagaagatgg
cctagtcggccatcattggaaagagaggcccattggtcttgcaaacttta
tatgcttcagtacaggggaaccccagggccaagaagtgggag
gaattcattaatgaagttatttgggcctagaacttttttaattggacttt
atttatttttttgttatttttattttatacttttaaaaacttagtatatt
taatagccatggaattattcacattatctgcttggttttttgttttatct
gttaaactttgtctcttgaaaaaatgggcacattttaaactaggtaactg
aatttatgatcagagtactgtttatagtcgttcattattttccatttgaa
acagatgaagtctgtgttgatgcattctgtttcctaagagttgtatttta
ttctttttctttatttgccttattatttctaatcagcttaataggtcttt
gcaatgaatcaattttgttttaattaattttctgtgtatattttgtgttt
tgtgcttctgcctgttgccatgcatatgatatttaaaaactgcagttttc
cacaaggacgcatattgagttacttatttcataccagtgattcttaatag
gaacatttaaggatgcatgtttatctgtaaagaatgctgtaagtttatcc
cacccatttaaaagtgtcttcaaatatcctttgagattttctccaggttg
ctcagaagcatttcctttagcttcctagcatttgagcatttgctgatagt
tttgtgttactgactagtagtgagtgtaacaccattatgtctgatctcat
acttgccttactgctattctgataacatccttggtatactcctattatgt
tgatccaatctgctggcacttgattcactttccatcatagatcttgacag
atatcggaagagcttttgaaagaaaaaaatatatgttgccatttgtagca
tatcctataaatatttagcacatcaaggtggcttttgaggtcggtatccc
taacagtgcatttcaggttaactactgagataattgtgagtctctgtcat
aattgctgatttacagctctatcactttttactttatacattttatctct
taattactgttctacaagttgggctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-128L11.b_269_546 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGGGTTCCCCTGTACTGAAGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| ||||||||||||||||| |||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTC--CGGGGGTACTGGTCAGTT  101
      ||||||||| ||||||||| |||| |||||   |||||||||||| ||||
seq2  TGATACATATGCAGCTAGAAACACAAGCTCTGGGGGGGTACTGGTTAGTT  150

seq1  CATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGT  151
      |||| |||||||| ||||||||||||||||| |||| ||||||||| |||
seq2  CATATTGTTGTTCAACCTATAGGGTTGCAGA-CCCTCTAGCTCCTTAGGT  199

seq1  ACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTG  201
      |||||||||| |||||||||||||| ||||||||||| ||||||||||||
seq2  ACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTG  248

seq1  ACTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      | ||||||||||||||||||| ||||||||
seq2  ATTGTGAGCATCCACTTCTGTATTTGCTAG  278

seq1: chr13_106266174_106267206
seq2: B6Ng01-128L11.g_68_1094

seq1  GAATTCATTAATGAAGTTATTTGGGCCTAGAACTTTTTTAATTGGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATGAAGTTATTTGGGCCTAGAACTTTTTTAATTGGACTTT  50

seq1  ATTTATTTTTTTGTTATTTTTATTTTATACTTTTAAAAACTTAGTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTTGTTATTTTTATTTTATACTTTTAAAAACTTAGTATATT  100

seq1  TAATAGCCATGGAATTATTCACATTATCTGCTTGGTTTTTTGTTTTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCCATGGAATTATTCACATTATCTGCTTGGTTTTTTGTTTTATCT  150

seq1  GTTAAACTTTGTCTCTTGAAAAAATGGGCACATTTTAAACTAGGTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTTGTCTCTTGAAAAAATGGGCACATTTTAAACTAGGTAACTG  200

seq1  AATTTATGATCAGAGTACTGTTTATAGTCGTTCATTATTTTCCATTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGATCAGAGTACTGTTTATAGTCGTTCATTATTTTCCATTTGAA  250

seq1  ACAGATGAAGTCTGTGTTGATGCATTCTGTTTCCTAAGAGTTGTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAAGTCTGTGTTGATGCATTCTGTTTCCTAAGAGTTGTATTTTA  300

seq1  TTCTTTTTCTTTATTTGCCTTATTATTTCTAATCAGCTTAATAGGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTATTTGCCTTATTATTTCTAATCAGCTTAATAGGTCTTT  350

seq1  GCAATGAATCAATTTTGTTTTAATTAATTTTCTGTGTATATTTTGTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAATCAATTTTGTTTTAATTAATTTTCTGTGTATATTTTGTGTTT  400

seq1  TGTGCTTCTGCCTGTTGCCATGCATATGATATTTAAAAACTGCAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTGCCTGTTGCCATGCATATGATATTTAAAAACTGCAGTTTTC  450

seq1  CACAAGGACGCATATTGAGTTACTTATTTCATACCAGTGATTCTTAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGACGCATATTGAGTTACTTATTTCATACCAGTGATTCTTAATAG  500

seq1  GAACATTTAAGGATGCATGTTTATCTGTAAAGAATGCTGTAAGTTTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAAGGATGCATGTTTATCTGTAAAGAATGCTGTAAGTTTATCC  550

seq1  CACCCATTTAAAAGTGTCTTCAAATATCCTTTGAGATTTTCTCCAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTTAAAAGTGTCTTCAAATATCCTTTGAGATTTTCTCCAGGTTG  600

seq1  CTCAGAAGCATTTCCTTTAGCTTCCTAGCATTTGAGCATTTGCTGATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCATTTCCTTTAGCTTCCTAGCATTTGAGCATTTGCTGATAGT  650

seq1  TTTGTGTTACTGACTAGTAGTGAGTGTAACACCATTATGTCTGATCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTACTGACTAGTAGTGAGTGTAACACCATTATGTCTGATCTCAT  700

seq1  ACTTGCCTTACTGCTATTCTGATAACATCCTTGGTATACTCCTATTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTTACTGCTATTCTGATAACATCCTTGGTATACTCCTATTATGT  750

seq1  TGATCCAATCTGCTGGCACTTGATTCACTTTCCATCATAGATCTTGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAATCTGCTGGCACTTGATTCACTTTCCATCATAGATCTTGACAG  800

seq1  ATATCGGAAGAGCTTTTGAAAGAAAAAAATATATGTTGCCA-TTGTAGCA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATCGGAAGAGCTTTTGAAAGAAAAAAATATATGTTGCCATTTGTAGCA  850

seq1  TATCCTATAAATATTAAGCACATCAAGGTGGCTGTTGAGGTCGGTATCCC  899
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TATCCTATAAATATTTAGCACATCAAGGTGGCTTTTGAGGTCGGTATCCC  900

seq1  TAACAGTGCA-TTCA-GTTAACTACTGAGATTAATTGTGAAGTCTCCTGT  947
      |||||||||| |||| |||||||||||||| |||||||| ||||| ||||
seq2  TAACAGTGCATTTCAGGTTAACTACTGAGA-TAATTGTG-AGTCT-CTGT  947

seq1  CATAATTGCTGATTTACCAGCTCTATCACTTTTTAACTTTATACAATTTT  997
      |||||||||||||||| ||||||||||||||||| ||||||||||  |||
seq2  CATAATTGCTGATTTA-CAGCTCTATCACTTTTT-ACTTTATACA--TTT  993

seq1  AATCTCTTTATTTACATGTCTACAAAGTTGGGCTCG  1033
       ||||| ||| ||||   ||||| ||||||||||||
seq2  TATCTC-TTAATTACTGTTCTAC-AAGTTGGGCTCG  1027