BAC Information

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BAC

Clone NameB6Ng01-129I05
ChromosomeX (Build37)12 (Build37)
Map Location 36,339,066 - 36,339,54047,156,033 - 47,157,147
singlet/doubletsingletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I05.bB6Ng01-129I05.g
ACCDH931074DH931075
length7011,098
definitionDH931074|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I05, 5' end.DH931075|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,339,066 - 36,339,540)(47,156,033 - 47,157,147)
sequence
gaattctttgttcagctctgagccccatcttttaatggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtgatct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaaaatcttctaaagggctaatattcacttatcagtgagtgc
atatcatgtgtgttcttttgtgactggtttacctcacgcaggatgttatt
ttctagttcaatccagcaagattttatcgaaaaaacccagatgtagctgt
ctcttgtgagactatgccggggcctagcaaacacagaagtggatgctcac
agtcagctattggatggatcacagggctcccaatggaagagctagagaaa
gtacccaaggagctaaagggatctgcaaccctataggtggaacaacattg
tgaactaaccagtaccccggagctcttgactctagctccatatgtatcaa
aagatggcctagtcggccatcactggaaagagaggcccattggacatgca
aactgtatatgccccagtacagggggaacgccagggccaaaaaaaaaaat
g
gaattcattttgtgttctgtttaaatccatggggcttaaggaggattagt
ggtaagatgttgagaaagaaacttgagaatttattaccataaactatttg
ttattgaaacaattctttttacaaaaatattttgaaaagtgtattaagac
attaatcaatatgttattagacatcaggcagaaaacatctgaattgtaaa
ccagagtgctttacaatttggataatcaaaaattacaagaataaaagaat
ggatgtcaaatatattgtcaaattcaaaagagactcagaacaaatggcta
tttgtaagtgcatgtgggcctgtaacaattttgagtaccataaattctaa
ctcttctcagcttttcgcatccaccgccttaaacttctccagttcatagg
ctttctttctcccagctcctaattcttacataaccctgccattttggcca
tgtgttctctaggccctccctcaagccttcagctctcttggccctctttt
tttgtcttcctctctttctcttcttctctagcattctctccatcccttct
cacatggcctcctccaatatgctggtcctgtttagtctactactttctct
ccctgctctagatacttccacatgcctctggctttactctccccatatca
acagtaaaatcctttcccttggccacaccttggagtgattatgtcctcac
ttcacacaatatcattttcttgggtctcctgtgtgtgtccttcctccttt
taatgtgatttcaaatgtccaactcttaattcactgttaagtatgacttc
caacacctatacacacacacacacacacacacacacacacacacacacac
acactcacacacacactgagaagttctcccctcaaagtcattttgacttt
agaatatgatattttgtttagttctatagaaaaaaattttttcccatttc
tgaatatgtctattttcaaagcaacttctgtaaatgcattcttcaccagt
agaatatgggaacaaatccaccatgcccagaaagaatgttgaaccatcta
tgcaccctccctccccacatcagaaagacattccttatgccaactacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36339066_36339540
seq2: B6Ng01-129I05.b_412_748 (reverse)

seq1  CATTTTTTTTTTTTTGAGTGAAATTTTTATTTTTATTTTTTCCTTTTCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCCATACCCACCCACCCCCACTCCCCTACACACCCACTCCCCCGTTT  150
                                           || |      |||
seq2  -------------------------------------CATT--TTTTTTT  11

seq1  TTGGCCTTGGCGTT-CCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCA  199
      |||||| ||||||| |||||||||||||||||||| ||||||| ||||||
seq2  TTGGCCCTGGCGTTCCCCCTGTACTGGGGCATATACAGTTTGCATGTCCA  61

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATA  111

seq1  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  299
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCACAATGTTGTT  161

seq1  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  211

seq1  TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCC  399
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTCCATTGGGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCC  261

seq1  ACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACAT  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  311

seq1  CTGGGTCCTTTCGATAAAATCTTGCT  475
      ||||||  ||||||||||||||||||
seq2  CTGGGTTTTTTCGATAAAATCTTGCT  337

seq1: chr12_47156033_47157147
seq2: B6Ng01-129I05.g_71_1168 (reverse)

seq1  GGTAGTTGGCAATAAGAATGCTCTTCCTGACTGTGTGGAGTGAGGTTGCC  50
      |||||||||||  | ||||| |||| |||| |||| |||| |||| || |
seq2  GGTAGTTGGCATAAGGAATG-TCTTTCTGA-TGTGGGGAGGGAGGGTG-C  47

seq1  ATAGAATTTGTTCCACCATTCTCTCCTTGGCATTGTTGATTTTGTTCCCA  100
      |||||   || | || |||||| | || ||||| || || ||||||||||
seq2  ATAGA---TGGTTCAACATTCT-TTCTGGGCATGGTGGA-TTTGTTCCCA  92

seq1  TAATTCCTACTTGGTG-AGAATGCATTAACAG-AGTTGCTCTGAAAATAA  148
      ||  | |||| ||||| |||||||||| |||| ||||||| ||||||| |
seq2  TA--TTCTAC-TGGTGAAGAATGCATTTACAGAAGTTGCTTTGAAAAT-A  138

seq1  GACATATTCAGAAATGAGAAAAAATATTTTTCCTAATAGAACTAAAACAA  198
      |||||||||||||||| |||||||| ||||||   |||||||||||  ||
seq2  GACATATTCAGAAATGGGAAAAAATTTTTTTC--TATAGAACTAAACAAA  186

seq1  AAATAATCAATAATCCAAAAGTCAAAATGACTTTGAGGTGAGAACTTCCC  248
      | || ||     || | ||||||||||||||||||||| ||||||||| |
seq2  ATATCAT-----ATTCTAAAGTCAAAATGACTTTGAGGGGAGAACTTCTC  231

seq1  AGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  281

seq1  TGTGTGTATAGGTGTTGGAAGTCATACTTAACAGTGAATTAAGAGTTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATAGGTGTTGGAAGTCATACTTAACAGTGAATTAAGAGTTGGA  331

seq1  CATTTGAAATCACATTAAAAGGAGGAAGGACACACACAGGAGACCCAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATCACATTAAAAGGAGGAAGGACACACACAGGAGACCCAAGA  381

seq1  AAATGATATTGTGTGAAGTGAGGACATAATCACTCCAAGGTGTGGCCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTGTGTGAAGTGAGGACATAATCACTCCAAGGTGTGGCCAAG  431

seq1  GGAAAGGATTTTACTGTTGATATGGGGAGAGTAAAGCCAGAGGCATGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTTTACTGTTGATATGGGGAGAGTAAAGCCAGAGGCATGTGG  481

seq1  AAGTATCTAGAGCAGGGAGAGAAAGTAGTAGACTAAACAGGACCAGCATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTAGAGCAGGGAGAGAAAGTAGTAGACTAAACAGGACCAGCATA  531

seq1  TTGGAGGAGGCCATGTGAGAAGGGATGGAGAGAATGCTAGAGAAGAAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGGCCATGTGAGAAGGGATGGAGAGAATGCTAGAGAAGAAGAG  581

seq1  AAAGAGAGGAAGACAAAAAAAGAGGGCCAAGAGAGCTGAAGGCTTGAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGAAGACAAAAAAAGAGGGCCAAGAGAGCTGAAGGCTTGAGGG  631

seq1  AGGGCCTAGAGAACACATGGCCAAAATGGCAGGGTTATGTAAGAATTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAGAGAACACATGGCCAAAATGGCAGGGTTATGTAAGAATTAGG  681

seq1  AGCTGGGAGAAAGAAAGCCTATGAACTGGAGAAGTTTAAGGCGGTGGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAGAAAGAAAGCCTATGAACTGGAGAAGTTTAAGGCGGTGGATG  731

seq1  CGAAAAGCTGAGAAGAGTTAGAATTTATGGTACTCAAAATTGTTACAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGCTGAGAAGAGTTAGAATTTATGGTACTCAAAATTGTTACAGGC  781

seq1  CCACATGCACTTACAAATAGCCATTTGTTCTGAGTCTCTTTTGAATTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCACTTACAAATAGCCATTTGTTCTGAGTCTCTTTTGAATTTGA  831

seq1  CAATATATTTGACATCCATTCTTTTATTCTTGTAATTTTTGATTATCCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTGACATCCATTCTTTTATTCTTGTAATTTTTGATTATCCAA  881

seq1  ATTGTAAAGCACTCTGGTTTACAATTCAGATGTTTTCTGCCTGATGTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGCACTCTGGTTTACAATTCAGATGTTTTCTGCCTGATGTCTA  931

seq1  ATAACATATTGATTAATGTCTTAATACACTTTTCAAAATATTTTTGTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATATTGATTAATGTCTTAATACACTTTTCAAAATATTTTTGTAAA  981

seq1  AAGAATTGTTTCAATAACAAATAGTTTATGGTAATAAATTCTCAAGTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTTTCAATAACAAATAGTTTATGGTAATAAATTCTCAAGTTTC  1031

seq1  TTTCTCAACATCTTACCACTAATCCTCCTTAAGCCCCATGGATTTAAACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAACATCTTACCACTAATCCTCCTTAAGCCCCATGGATTTAAACA  1081

seq1  GAACACAAAATGAATTC  1115
      |||||||||||||||||
seq2  GAACACAAAATGAATTC  1098