BAC Information

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BAC

Clone NameB6Ng01-130N12
Chromosome12 (Build37)3 (Build37)
Map Location 79,721,096 - 79,721,6343,255,128 - 3,256,076
singlet/doubletsingletsinglet
Overlap geneGphn
Upstream geneLOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130N12.bB6Ng01-130N12.g
ACCDH932054DH932055
length800944
definitionDH932054|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N12, 5' end.DH932055|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,721,096 - 79,721,634)(3,255,128 - 3,256,076)
sequence
gaattctccagtggaatttttagggtcacttatatatactatcatatcat
ctgcaaaaagatattttgacttcttccttttcaatttgtatccccttgat
ctcgttttgttgttgaatggctctggctaggttttcaagtactaggttga
ataggtatggagaaagtgggcagccttttctagtccctgattttagtggg
attgcttccagcttctcaccatttactttgatgttggctactggtttgct
gtagattgcttttatcatgtttaggaatgggcctttaattcctgatcttt
ccaagtcttttatcatgaatgggtgttgaattttgtcaaatgttttctcc
gcatctaatgagatgatcatgtggtttttgtatttgagttagtttatata
gtggattacgttgatggatttccgtatattaaaccatccctgcatccctg
gagtgaaacctacttggtctggatggatgattgtttttatgtgttcttgg
atttgattagcgagaattttattgagtatttttgcatcgatattcataag
ggaaattgctctgaagttctctgtctttgtagggtctgtctgaggtttag
gtatcagagttattgtggtttcatagaatgaattgggttgagcacttttc
tgcttctcttctgtggaatagtttgtgaggaactggaattagatctttga
aggtctgatagaactctccactaaacaatctggtcctgggcttttttttg
ggtggtagactattaatgactgcttctatttctttaggggatataggacc

gaattctcacctgaggaataccgaatggcagagaaactgaaagacccccg
aagggagaccctcactcaagcctcgggacagcagcggacccaagaagaca
ttgagaccgaacttaaaatgtagtgggcaagatttaataaagtaacagca
agaaagcacatagaccagagctctggggtcgaaactcatacacctagtat
ggtgtagaggagaatcgaccttgagccaaatttttcacaggcttatatag
gaaaaactcaagggggagagcggggcagggaaagtacaagtttgcataac
taaggggttctgccaagcgacaaggggttctgccaagggaattctacgta
actaaggggtcatgtcctattatttggcaatgtacccggttcattctgag
gttgttccaggaggcccttatctcaaaaatgttcttggaacagtctttag
ttgggagggttcgaactcttgggtgaggagttcaggaatgcattctgggg
tgaagagttcaggagtgttctgggaacaatctctagatgggaggggtcgg
gctctggggtgaggaagagttcagtaattttttatctttattcttcattc
cccactccttttagaaaatagctctaatcttagagcgagttttcaacctc
ttggaggacccgatattgttgcctttattaccataacttgtactgcattt
atcctttctctaataaaagctaccaacttattaaggatgcagggaccaaa
agtaagcaaagcatagtgtatttaaaggtcctgctatggtggagaggaga
gtggtgagccaaggggactattaaaccagttttcgaccatccttgttggc
ctttctctttcttctttacggtatatctaggcgtctctaagtttggccta
agaatctttgatgcctcctgaatggcacataaaaacacattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79721096_79721634
seq2: B6Ng01-130N12.b_306_846 (reverse)

seq1  GTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTTT-----CC  45
      ||||||||||||||||||||||||||||||||||||||||| |     ||
seq2  GTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTACCACCC  50

seq1  CAAAAAAAGCCCAAAACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  95
       ||||||||||||  |||||||  |||||||| |||||||||||||||||
seq2  AAAAAAAAGCCCAGGACCAGAT-TGTTTAGTGGAGAGTTCTATCAGACCT  99

seq1  TCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAA  145
      |||   ||||||||||||||||||  |||||||||||||||| || ||||
seq2  TCA---AAGATCTAATTCCAGTTCCTCACAAACTATTCCACAGAAGAGAA  146

seq1  GCAG-AAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGA  194
      |||| || || ||| ||||||||||||||||||| ||||||| |||||||
seq2  GCAGAAAAGTGCTCAACCCAATTCATTCTATGAAACCACAATAACTCTGA  196

seq1  TACCTATTCCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATT  244
      ||||||  || |||| |||||| ||||||| ||||||||||||| |||||
seq2  TACCTAAACCTCAGACAGACCCTACAAAGACAGAGAACTTCAGAGCAATT  246

seq1  TCCCTTATGAATATCGATGCAAAAATCCTCAATTAAATTCTCGCTAACCG  294
      |||||||||||||||||||||||||| |||||| ||||||||||||| | 
seq2  TCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCGCTAATCA  296

seq1  AATCCAAAAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCA  344
      ||||||| ||||||| ||||||||||||||||| ||||||||||||||||
seq2  AATCCAAGAACACATAAAAACAATCATCCATCCAGACCAAGTAGGTTTCA  346

seq1  TTCCAGGGGTGCAGGGATGGTTTAATATACAGAAATCCATCAATGTAATC  394
       ||||||| ||||||||||||||||||||| |||||||||||| ||||||
seq2  CTCCAGGGATGCAGGGATGGTTTAATATACGGAAATCCATCAACGTAATC  396

seq1  CACTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGA  444
      |||||||||||| |||||||| |||||||||||||||||||||| |||||
seq2  CACTATATAAACTAACTCAAATACAAAAACCACATGATCATCTCATTAGA  446

seq1  TGCGGAGAAAGCATTTGACAAAATCAAACACACATTCATGATAAAAGTCT  494
      |||||||||| |||||||||||||  ||||| ||||||||||||||| ||
seq2  TGCGGAGAAAACATTTGACAAAATTCAACACCCATTCATGATAAAAGACT  496

seq1  TGGAAAAATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAG  539
      |||||| |||||||||| ||||||||| |||||||||||||||||
seq2  TGGAAAGATCAGGAATTAAAGGCCCATTCCTAAACATGATAAAAG  541

seq1: chr3_3255128_3256076
seq2: B6Ng01-130N12.g_68_1011

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACTGAAAGACCCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACTGAAAGACCCCCG  50

seq1  AAGGGAGACCCTCACTCAAGCCTCGGGACAGCAGCGGACCCAAGAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGACCCTCACTCAAGCCTCGGGACAGCAGCGGACCCAAGAAGACA  100

seq1  TTGAGACCGAACTTAAAATGTAGTGGGCAAGATTTAATAAAGTAACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCGAACTTAAAATGTAGTGGGCAAGATTTAATAAAGTAACAGCA  150

seq1  AGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACTCATACACCTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACATAGACCAGAGCTCTGGGGTCGAAACTCATACACCTAGTAT  200

seq1  GGTGTAGAGGAGAATCGACCTTGAGCCAAATTTTTCACAGGCTTATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGAGGAGAATCGACCTTGAGCCAAATTTTTCACAGGCTTATATAG  250

seq1  GAAAAACTCAAGGGGGAGAGCGGGGCAGGGAAAGTACAAGTTTGCATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTCAAGGGGGAGAGCGGGGCAGGGAAAGTACAAGTTTGCATAAC  300

seq1  TAAGGGGTTCTGCCAAGCGACAAGGGGTTCTGCCAAGGGAATTCTACGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTTCTGCCAAGCGACAAGGGGTTCTGCCAAGGGAATTCTACGTA  350

seq1  ACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCGGTTCATTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCGGTTCATTCTGAG  400

seq1  GTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGGAACAGTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGGAACAGTCTTTAG  450

seq1  TTGGGAGGGTTCGAACTCTTGGGTGAGGAGTTCAGGAATGCATTCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGTTCGAACTCTTGGGTGAGGAGTTCAGGAATGCATTCTGGGG  500

seq1  TGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATGGGAGGGGTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATGGGAGGGGTCGG  550

seq1  GCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTTTATTCTTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTTTATTCTTCATTC  600

seq1  CCCACTCCTTTTAGAAAATAGCTCTAATCTTAGAGCGAGTTTTCAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTTTTAGAAAATAGCTCTAATCTTAGAGCGAGTTTTCAACCTC  650

seq1  TTGGAGGACCCGATATTGTTGCC-TTATTACCATAACTTGTACTGCATTT  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGGAGGACCCGATATTGTTGCCTTTATTACCATAACTTGTACTGCATTT  700

seq1  ATCCTTTCTCTAATAAAAGCTACCAACTTATTAAGGATGCAGGGACCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCTCTAATAAAAGCTACCAACTTATTAAGGATGCAGGGACCAAA  750

seq1  AGTAAGCAAAAGCATAAGTGTAATTAAAGGTCCTGCTATGGTGGAGAGGA  799
      ||||||| ||||||| |||||| |||||||||||||||||||||||||||
seq2  AGTAAGC-AAAGCAT-AGTGTATTTAAAGGTCCTGCTATGGTGGAGAGGA  798

seq1  GAGTGGTGAGCCAAGGGGACTTATTAAACCAGCTTTCGAACCATCCTTGT  849
      |||||||||||||||||||| ||||||||||| ||||| |||||||||||
seq2  GAGTGGTGAGCCAAGGGGAC-TATTAAACCAGTTTTCG-ACCATCCTTGT  846

seq1  TGG-CTTTCTCTTTCTCTTTTAC-GTATATCTAGGCGTTCTCTAAGTTTG  897
      ||| ||||||||||||  ||||| ||||||||||||| ||||||||||||
seq2  TGGCCTTTCTCTTTCTTCTTTACGGTATATCTAGGCG-TCTCTAAGTTTG  895

seq1  GCCATAGAATCTTTGATTGCTCCTGAATGGTCAACATAAAAACAACATTC  947
      |||  ||||||||||||  |||||||||||   |||||||||| ||||||
seq2  GCCTAAGAATCTTTGATGCCTCCTGAATGG--CACATAAAAAC-ACATTC  942

seq1  TT  949
      ||
seq2  TT  944