BAC Information

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BAC

Clone NameB6Ng01-131H18
Chromosome12 (Build37)
Map Location 35,115,051 - 35,250,814
singlet/doubletdoublet
Overlap geneHdac9
Upstream geneTwistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131H18.bB6Ng01-131H18.g
ACCDH932530DH932531
length1,1331,162
definitionDH932530|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H18, 5' end.DH932531|Mus musculus domesticus DNA, BAC clone: B6Ng01-131H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,249,677 - 35,250,814)(35,115,051 - 35,116,211)
sequence
gaattctttgggaatcgtattggaagtagagcagtgcattccgctctagg
gtccatggcttcaccagctatgggtagtgggatagagttacagtaactct
catgtactcccttcctattgagtaggtcttaggttgaattagttggcttc
caccaaaaaataagtaccagtgttgcacccttgggaacatttttctgggc
tgatcattgtctatggcttttagggggacattataaccccaaatgacata
acttcattaaattatttatgtatatatgcatatttacatgtatattttat
aaattatattgaagtaaacataaatcttgtgattttttttattttttact
ttccattcatccgtagtattctttatgccttctctctctctctccctcct
cctgagtgtttcccttcccacactctccagataaagtcactcccccctgt
tgtacacattttcccttgatagaacctttgtcctactattcctccccatg
gggcacctttttactttcctggtttctgggtttactccaggttatgtact
aatgtttaaaggtctggagcctcactcattataatatcatttaatctgaa
tagaatttctcgatcatgtgtatgtatcagttttgatcatcagttatcag
ctgtagggcattcaggttacttcttttccctggctattgcgaatggaaaa
acagtgatcgcggctgagcaaatacctataaggtagagccctccttagcc
aggctttcagcagttacttaagtcttcagcaactggacaaaattgtttcc
ttctcaatcctgttagaaaatacttagtaaatattcaattgttcctggat
tacacagtgagagcctcataatctaatctgaaatgccatttcagaaagga
taatagaatacattactgactacagatttgggtacaattttcctaaagta
caattatgaagttataaaagagagtgttgacatagaaacactatctatag
tttgtctgtacttgtattaatcatatggaaaattaagaacatttacgtag
tgggcattctaatttcagatcaaaatatcataaatttaatactttgatga
atataaccttctgtatgggcatggcagttaagc
gaattcattgaaaagaagcaattgtgctatcggagaaggcttcagaggac
tgaactcacaggatccagtgtgtacaaacaccacacttgttatatataat
ggagaaagttcccaggccacagggccactgccacactgactgatccacca
cagattttatttgagaaatactctcaacaatgaacttattgaagatcatt
tcacatactggtaactggtaaagcatcgaaatgtgtccctatcccctttg
tatgcagagggagaccgctccgttgagaattcaaaaaaattgcccagagc
cgcatagtcaattgctaaaattaatgatttatggttagctggaattatat
tccatgatcactactgacatgaggaaccatgtctaatatactcaagggaa
ctgctgaagaattccccacagatgaattatttcctaatagttgtttctca
ctagagacttttctttaaatctgctaactctgaaagcattatgaatcagt
caggtatcacgtagacagttttaggtaacacaatcttatatatttcagat
aatttgtgatactgactggtttctcaggccaactgatacaaaggacacaa
ttgtttagatgtctggaatattttgaagtctgcttgttacctcagtttta
aatgaacaagagagtagtcacctacacaacagactcagaagtggagcaac
tgttctttgaaacttggcatgcttacaaattccataaaataattagtatt
gactttctgtccttgatacaagggactgaaatatatatttcacacagaat
tttaaggccattcaacaaacacgtttatgtgagaactgaatccattatcc
agtagcctattatcaaacattatttgtatatctagtctttgatctgattc
tgagaggaaaaacacattattcctatctcacagaggaaagaatggcattt
ttatatatatctctgatgaagttggggaaacgaggtcccataaaagctcc
aggacaccatgtatcttgttgtctgtctgtatctcagcagtcagactcct
tatttcctggttgaaagagtgagctacagcaggtagggcctgaggagtta
gcgaagggcttagcttgttttaagttctttcttcctttacttcatcccct
tcttctcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35249677_35250814
seq2: B6Ng01-131H18.b_46_1178 (reverse)

seq1  GCTTAACTGCAATGCCCATACAGA--GTTATAATTCATCAAAGTATTAAA  48
      |||||||||| |||||||||||||  ||||| ||||||||||||||||||
seq2  GCTTAACTGCCATGCCCATACAGAAGGTTAT-ATTCATCAAAGTATTAAA  49

seq1  TTTTATGATATTTTGATCTGAAAATTAAGAAAATGCCCACTACGTAAATG  98
       |||||||||||||||||||||| |    | |||||||||||||||||||
seq2  -TTTATGATATTTTGATCTGAAATT----AGAATGCCCACTACGTAAATG  94

seq1  -TCTATATTTTCCATATGATTAATCACAGTAACAGACAAACTATAGATAG  147
       |||  |||||||||||||||||| |||   |||||||||||||||||||
seq2  TTCTTAATTTTCCATATGATTAAT-ACAAGTACAGACAAACTATAGATAG  143

seq1  TTGTTTCTATGTCAACACTCTCTTTTAATAACTTCATAATTGTACTTTAG  197
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -TGTTTCTATGTCAACACTCTCTTTT-ATAACTTCATAATTGTACTTTAG  191

seq1  G-AAATTGTA-CCAAATCTGTAGTCAGTAATGTATTCTATTATCCTTTCT  245
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTACCCAAATCTGTAGTCAGTAATGTATTCTATTATCCTTTCT  241

seq1  G-AATGGCATTTTCAGATTAGATTATGAGGCTCTCACTGTGTAATTCCAG  294
      | ||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  GAAATGGCA-TTTCAGATTAGATTATGAGGCTCTCACTGTGTAA-TCCAG  289

seq1  GAACAATTGAATATTTACTAAGTATTTTTCTAACAGGATTGAGAAGG-AA  343
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  GAACAATTGAATATTTACTAAGTA-TTTTCTAACAGGATTGAGAAGGAAA  338

seq1  CAATTTTGTCCAGTTGCTGAAGACTTAAGTAACTGCTGAAAGCCTGGCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTCCAGTTGCTGAAGACTTAAGTAACTGCTGAAAGCCTGGCTA  388

seq1  AGGAGGGCTCTACCTTATAGGTATTTGCTCAGCCGCGATCACTGTTTTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCTCTACCTTATAGGTATTTGCTCAGCCGCGATCACTGTTTTTC  438

seq1  CATTCGCAATAGCCAGGGAAAAGAAGTAACCTGAATGCCCTACAGCTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCAATAGCCAGGGAAAAGAAGTAACCTGAATGCCCTACAGCTGAT  488

seq1  AACTGATGATCAAAACTGATACATACACATGATCGAGAAATTCTATTCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGATCAAAACTGATACATACACATGATCGAGAAATTCTATTCAG  538

seq1  ATTAAATGATATTATAATGAGTGAGGCTCCAGACCTTTAAACATTAGTAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGATATTATAATGAGTGAGGCTCCAGACCTTTAAACATTAGTAC  588

seq1  ATAACCTGGAGTAAACCCAGAAACCAGGAAAGTAAAAAGGTGCCCCATGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGAGTAAACCCAGAAACCAGGAAAGTAAAAAGGTGCCCCATGG  638

seq1  GGAGGAATAGTAGGACAAAGGTTCTATCAAGGGAAAATGTGTACAACAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATAGTAGGACAAAGGTTCTATCAAGGGAAAATGTGTACAACAGG  688

seq1  GGGGAGTGACTTTATCTGGAGAGTGTGGGAAGGGAAACACTCAGGAGGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGACTTTATCTGGAGAGTGTGGGAAGGGAAACACTCAGGAGGAG  738

seq1  GGAGAGAGAGAGAGAAGGCATAAAGAATACTACGGATGAATGGAAAGTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGAGAAGGCATAAAGAATACTACGGATGAATGGAAAGTAA  788

seq1  AAAATAAAAAAAATCACAAGATTTATGTTTACTTCAATATAATTTATAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAAAATCACAAGATTTATGTTTACTTCAATATAATTTATAAA  838

seq1  ATATACATGTAAATATGCATATATACATAAATAATTTAATGAAGTTATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATGTAAATATGCATATATACATAAATAATTTAATGAAGTTATGT  888

seq1  CATTTGGGGTTATAATGTCCCCCTAAAAGCCATAGACAATGATCAGCCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGGTTATAATGTCCCCCTAAAAGCCATAGACAATGATCAGCCCA  938

seq1  GAAAAATGTTCCCAAGGGTGCAACACTGGTACTTATTTTTTGGTGGAAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTTCCCAAGGGTGCAACACTGGTACTTATTTTTTGGTGGAAGC  988

seq1  CAACTAATTCAACCTAAGACCTACTCAATAGGAAGGGAGTACATGAGAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATTCAACCTAAGACCTACTCAATAGGAAGGGAGTACATGAGAGT  1038

seq1  TACTGTAACTCTATCCCACTACCCATAGCTGGTGAAGCCATGGACCCTAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAACTCTATCCCACTACCCATAGCTGGTGAAGCCATGGACCCTAG  1088

seq1  AGCGGAATGCACTGCTCTACTTCCAATACGATTCCCAAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAATGCACTGCTCTACTTCCAATACGATTCCCAAAGAATTC  1133

seq1: chr12_35115051_35116211
seq2: B6Ng01-131H18.g_68_1229

seq1  GAATTCATTGAAAAGAAGCAATTGTGCTATCGGAGAAGGCTTCAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAAAGAAGCAATTGTGCTATCGGAGAAGGCTTCAGAGGAC  50

seq1  TGAACTCACAGGATCCAGTGTGTACAAACACCACACTTGTTATATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCACAGGATCCAGTGTGTACAAACACCACACTTGTTATATATAAT  100

seq1  GGAGAAAGTTCCCAGGCCACAGGGCCACTGCCACACTGACTGATCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGTTCCCAGGCCACAGGGCCACTGCCACACTGACTGATCCACCA  150

seq1  CAGATTTTATTTGAGAAATACTCTCAACAATGAACTTATTGAAGATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTATTTGAGAAATACTCTCAACAATGAACTTATTGAAGATCATT  200

seq1  TCACATACTGGTAACTGGTAAAGCATCGAAATGTGTCCCTATCCCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTGGTAACTGGTAAAGCATCGAAATGTGTCCCTATCCCCTTTG  250

seq1  TATGCAGAGGGAGACCGCTCCGTTGAGAATTCAAAAAAATTGCCCAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAGGGAGACCGCTCCGTTGAGAATTCAAAAAAATTGCCCAGAGC  300

seq1  CGCATAGTCAATTGCTAAAATTAATGATTTATGGTTAGCTGGAATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATAGTCAATTGCTAAAATTAATGATTTATGGTTAGCTGGAATTATAT  350

seq1  TCCATGATCACTACTGACATGAGGAACCATGTCTAATATACTCAAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATCACTACTGACATGAGGAACCATGTCTAATATACTCAAGGGAA  400

seq1  CTGCTGAAGAATTCCCCACAGATGAATTATTTCCTAATAGTTGTTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAGAATTCCCCACAGATGAATTATTTCCTAATAGTTGTTTCTCA  450

seq1  CTAGAGACTTTTCTTTAAATCTGCTAACTCTGAAAGCATTATGAATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACTTTTCTTTAAATCTGCTAACTCTGAAAGCATTATGAATCAGT  500

seq1  CAGGTATCACGTAGACAGTTTTAGGTAACACAATCTTATATATTTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCACGTAGACAGTTTTAGGTAACACAATCTTATATATTTCAGAT  550

seq1  AATTTGTGATACTGACTGGTTTCTCAGGCCAACTGATACAAAGGACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGATACTGACTGGTTTCTCAGGCCAACTGATACAAAGGACACAA  600

seq1  TTGTTTAGATGTCTGGAATATTTTGAAGTCTGCTTGTTACCTCAGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGATGTCTGGAATATTTTGAAGTCTGCTTGTTACCTCAGTTTTA  650

seq1  AATGAACAAGAGAGTAGTCACCTACACAACAGACTCAGAAGTGGAGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAGAGAGTAGTCACCTACACAACAGACTCAGAAGTGGAGCAAC  700

seq1  TGTTCTTTGAAACTTGGCATGCTTACAAATTCCATAAAATAATTAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGAAACTTGGCATGCTTACAAATTCCATAAAATAATTAGTATT  750

seq1  GACTTTCTGTCCTTGATACAAGGGACTGAAATATATA-TTCACACAGAAT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACTTTCTGTCCTTGATACAAGGGACTGAAATATATATTTCACACAGAAT  800

seq1  TTTAAGGCCATTCAACAAACACGTTTATGTGAGAACTGAATCCATTATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCCATTCAACAAACACGTTTATGTGAGAACTGAATCCATTATCC  850

seq1  AGTAGCCTATTATCAAACATTATTTGTATATCTAGTCTTTGATCTGATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTATTATCAAACATTATTTGTATATCTAGTCTTTGATCTGATTC  900

seq1  TGAGAGGAAAAACACATTATTCCTATCTCACAGAGGAAAGAATGGCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAAAAACACATTATTCCTATCTCACAGAGGAAAGAATGGCATTT  950

seq1  TATATA-ATATCTCTGATGAAGTTGGGGAAACGAGGTCCCATAAAAGCTC  998
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  T-TATATATATCTCTGATGAAGTTGGGGAAACGAGGTCCCATAAAAGCTC  999

seq1  CAAGAACACCATGTATCTTGTTGTCTGTCTGTATCTCAGCAGTCAGACT-  1047
      | || |||||||||||||||||||||||||||||||||||||||||||| 
seq2  C-AGGACACCATGTATCTTGTTGTCTGTCTGTATCTCAGCAGTCAGACTC  1048

seq1  CTTATTTCACTGGTGGAAAGAAGTGAGCTACAGCAGGGAGGGCCTGGAGG  1097
      |||||||| ||||| ||||| |||||||||||||||| ||||||| ||||
seq2  CTTATTTC-CTGGTTGAAAG-AGTGAGCTACAGCAGGTAGGGCCT-GAGG  1095

seq1  AGTTAGCGAA-GGCTTAGGCTTGTTTATAGTTCTTCCTCCCTTACCTTCA  1146
      |||||||||| |||||| ||||||||  ||||||| || ||||  |||||
seq2  AGTTAGCGAAGGGCTTA-GCTTGTTTTAAGTTCTTTCTTCCTTTACTTCA  1144

seq1  TCCC---CTTCTCTTCTT  1161
      ||||   |||||||||||
seq2  TCCCCTTCTTCTCTTCTT  1162