BAC Information

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BAC

Clone NameB6Ng01-132C20
Chromosome12 (Build37)
Map Location 27,611,078 - 27,717,626
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132C20.bB6Ng01-132C20.g
ACCDH933048DH933049
length1,1481,118
definitionDH933048|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C20, 5' end.DH933049|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,716,466 - 27,717,626)(27,611,078 - 27,612,222)
sequence
gaattctctgtctaagggcggctgcaactactgctgcctttgtaaaacca
cattgctgggcttagaggtgagcttctactgatccatgtgaaacattctt
cccatggtatctagaacatggagagagatgaaagaaggaatcaatgtcct
aagggaaaagtaaagtcacttttgtgacccaggggacactccatgtgaga
acaggtgccaggaagacttagtttagctttcaggaacaccaccaagggct
acttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct
gcatccatcagttttcacagtacacctgacctctattcagacccatggca
gcttcaaagatgaaggcagtaccaagaatagtttctgttacagccaaaaa
tcacatgggtagtcatttatgaaagtccaccactcccagttggtcccatt
tggcactaatgcaatcctaggggaagcagaaaaactaaacagtattatta
gcaatgacagaaagcttttagcctggctcccctgtaccatgatggatgct
gtttatcatattttacctgttgcttttaaactttccttgtcagaatgaat
catggctaaggggaaggggaccagattatagacaatgcgatttgtctaat
cgcagttgcccctcgtcaagagccgtgagcgaatgtaagcagaagcaacc
cgcaggctgaaaatcattctccctgccaaaactgtcaggggtgcacctgg
ctctgtatgaaagcccatactctgtgaagggggtggttcccttcctgtac
cggggagccaggtagtggaggtgcaggcttgagtcttgctatctagtggg
ttgataatgaagattaatttactcattccttatcgatgtaaattggaaca
tagagaggatgtcttacagctgagtggagcctgcccttagagacgcctac
ctgtactcccttgtcagcattgaactgtgtggaaactatcatgatggact
tctgctgcctcttcttgtgattccctgatcattctatgaaagcataaaca
ctacagacctgattatagtgatctcaaatttatgccacttccctcttttt
ggatagaataagctgtttcatttttggctaaataaaatggtttaagaa
gaattcaccttaaatagcaccattaacaacgaaaatgatcagttgtttcc
tttttctagaactgttgctgacaattgtctaattctttcaccattatcta
taaaccagaagagggagaggttgacaaaatggagttaggctttttctatc
tttagtagattcaatttcattgcaagggatttgggggagagacctcaaga
tgtcttaagtatttttattttatggatactattttgaaatattgtttaga
aatataattttctaaaaatataatttatgccaaaacacaattattaacca
gggctttgtagaaggtatgctattattttgaatggccatgtgtatgaagt
ctgtaattctgttaaatgaaatgagatatgaataatagtcacaataagaa
aatgagcccgatggggccctcggatccatccctagcacaggaaatataat
gtataaatatctgccatgaagccatggagacaagaatttgtaagatagaa
atggtaccagggctaacaagatgggtcagtgaataaatgtgcttgccacc
aagcctaataacctcaatttgatttctagcacctgcatggtggaaggggg
tagacctaactcttccaagttgtcccctggtggccacacacatggtaaag
cacactcacagatgtgtatgcatgtccattcatatatacatacatacaca
ttgaaggcatgcaataaataataaacccaagacagtcataatattttcct
tttcaagccataaattttagtttttcggacctagataactgtttattata
aatctctaagtgcatcctggcatgggaggatgtttgtatgtgcacaaact
gtttaattctcactgaacatcacacactcaataaaggaaataaacaaata
aagacatgaagtgtccctgagatatgttaccaattgcacctcagaactct
caggggagaaaagtacttccaggctgggggacagctctgcaagctgctag
atgctaggtactgctcgagaatggttgtagctgatgtgacagcaaagatg
tctgtttgaacccaatccagactggcactcggagccgggaagatgcggga
ttccactgtgagactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27716466_27717626
seq2: B6Ng01-132C20.b_44_1191 (reverse)

seq1  TTCTTAAACTATTTTATTTCTGCCAAAAATGGAAACAAGTTTATCTATAC  50
      ||||||||| |||||||||  ||||||||| ||||||  ||  ||||| |
seq2  TTCTTAAACCATTTTATTT-AGCCAAAAAT-GAAACAGCTTATTCTAT-C  47

seq1  AAAAAAGGGGGAAGTGGCATAAATATTGAGATCACTAATAAACAGTTCTG  100
       |||||| |||||||||||||||| ||||||||||| |||| ||| ||||
seq2  CAAAAAGAGGGAAGTGGCATAAAT-TTGAGATCACT-ATAATCAGGTCTG  95

seq1  TATGTGTTTATTGCTCTCATAGAATGATCAGGGAATCAACAAAGAAGAAG  150
      || ||||||| |||| ||||||||||||||||||||||   |||||| ||
seq2  TA-GTGTTTA-TGCTTTCATAGAATGATCAGGGAATCA--CAAGAAG-AG  140

seq1  GCAAGCAGGAGTCCATCATGATAGGTTTCCACACAGTTCAATGCTGACAA  200
      || ||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GC-AGCAGAAGTCCATCATGATA-GTTTCCACACAGTTCAATGCTGACAA  188

seq1  GGGGAGTACAGGGAGGCGTCTCTAAGGGCAGGCTCCACTCAGCTGTAAGA  250
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -GGGAGTACAGGTAGGCGTCTCTAAGGGCAGGCTCCACTCAGCTGTAAGA  237

seq1  CATCCTCTCTATGTTCCAATTTACATCGATAAGGAATGAGTAAATTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTCTATGTTCCAATTTACATCGATAAGGAATGAGTAAATTAATC  287

seq1  TTCATTATCAACCCACTAGATAGCAAGACTCAAGCCTGCACCTCCACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATCAACCCACTAGATAGCAAGACTCAAGCCTGCACCTCCACTAC  337

seq1  CTGGCTCCCCGGTACAGGAAGGGAACCACCCCCTTCACAGAGTATGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCCGGTACAGGAAGGGAACCACCCCCTTCACAGAGTATGGGCT  387

seq1  TTCATACAGAGCCAGGTGCACCCCTGACAGTTTTGGCAGGGAGAATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGAGCCAGGTGCACCCCTGACAGTTTTGGCAGGGAGAATGATT  437

seq1  TTCAGCCTGCGGGTTGCTTCTGCTTACATTCGCTCACGGCTCTTGACGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTGCGGGTTGCTTCTGCTTACATTCGCTCACGGCTCTTGACGAG  487

seq1  GGGCAACTGCGATTAGACAAATCGCATTGTCTATAATCTGGTCCCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTGCGATTAGACAAATCGCATTGTCTATAATCTGGTCCCCTTCC  537

seq1  CCTTAGCCATGATTCATTCTGACAAGGAAAGTTTAAAAGCAACAGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCATGATTCATTCTGACAAGGAAAGTTTAAAAGCAACAGGTAAA  587

seq1  ATATGATAAACAGCATCCATCATGGTACAGGGGAGCCAGGCTAAAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATAAACAGCATCCATCATGGTACAGGGGAGCCAGGCTAAAAGCTT  637

seq1  TCTGTCATTGCTAATAATACTGTTTAGTTTTTCTGCTTCCCCTAGGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATTGCTAATAATACTGTTTAGTTTTTCTGCTTCCCCTAGGATTG  687

seq1  CATTAGTGCCAAATGGGACCAACTGGGAGTGGTGGACTTTCATAAATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGCCAAATGGGACCAACTGGGAGTGGTGGACTTTCATAAATGAC  737

seq1  TACCCATGTGATTTTTGGCTGTAACAGAAACTATTCTTGGTACTGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGTGATTTTTGGCTGTAACAGAAACTATTCTTGGTACTGCCTTC  787

seq1  ATCTTTGAAGCTGCCATGGGTCTGAATAGAGGTCAGGTGTACTGTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAAGCTGCCATGGGTCTGAATAGAGGTCAGGTGTACTGTGAAAA  837

seq1  CTGATGGATGCAGCAAAGACTGCATTAGTCAGTTTTTATATCTGACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGATGCAGCAAAGACTGCATTAGTCAGTTTTTATATCTGACTTCT  887

seq1  TTTACCTAAGTAGCCCTTGGTGGTGTTCCTGAAAGCTAAACTAAGTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAAGTAGCCCTTGGTGGTGTTCCTGAAAGCTAAACTAAGTCTTC  937

seq1  CTGGCACCTGTTCTCACATGGAGTGTCCCCTGGGTCACAAAAGTGACTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCTGTTCTCACATGGAGTGTCCCCTGGGTCACAAAAGTGACTTT  987

seq1  ACTTTTCCCTTAGGACATTGATTCCTTCTTTCATCTCTCTCCATGTTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCCTTAGGACATTGATTCCTTCTTTCATCTCTCTCCATGTTCTA  1037

seq1  GATACCATGGGAAGAATGTTTCACATGGATCAGTAGAAGCTCACCTCTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATGGGAAGAATGTTTCACATGGATCAGTAGAAGCTCACCTCTAA  1087

seq1  GCCCAGCAATGTGGTTTTACAAAGGCAGCAGTAGTTGCAGCCGCCCTTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAATGTGGTTTTACAAAGGCAGCAGTAGTTGCAGCCGCCCTTAG  1137

seq1  ACAGAGAATTC  1161
      |||||||||||
seq2  ACAGAGAATTC  1148

seq1: chr12_27611078_27612222
seq2: B6Ng01-132C20.g_66_1183

seq1  GAATTCACCTTAAATAGCACCATTAACAACGAAAATGATCAGTTGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTAAATAGCACCATTAACAACGAAAATGATCAGTTGTTTCC  50

seq1  TTTTTCTAGAACTGTTGCTGACAATTGTCTAATTCTTTCACCATTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGAACTGTTGCTGACAATTGTCTAATTCTTTCACCATTATCTA  100

seq1  TAAACCAGAAGAGGGAGAGGTTGACAAAATGGAGTTAGGCTTTTTCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGAAGAGGGAGAGGTTGACAAAATGGAGTTAGGCTTTTTCTATC  150

seq1  TTTAGTAGATTCAATTTCATTGCAAGGGATTTGGGGGAGAGACCTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGATTCAATTTCATTGCAAGGGATTTGGGGGAGAGACCTCAAGA  200

seq1  TGTCTTAAGTATTTTTATTTTATGGATACTATTTTGAAATATTGTTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGTATTTTTATTTTATGGATACTATTTTGAAATATTGTTTAGA  250

seq1  AATATAATTTTCTAAAAATATAATTTATGCCAAAACACAATTATTAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTTTCTAAAAATATAATTTATGCCAAAACACAATTATTAACCA  300

seq1  GGGCTTTGTAGAAGGTATGCTATTATTTTGAATGGCCATGTGTATGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGTAGAAGGTATGCTATTATTTTGAATGGCCATGTGTATGAAGT  350

seq1  CTGTAATTCTGTTAAATGAAATGAGATATGAATAATAGTCACAATAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCTGTTAAATGAAATGAGATATGAATAATAGTCACAATAAGAA  400

seq1  AATGAGCCCGATGGGGCCCTCGGATCCATCCCTAGCACAGGAAATATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCCGATGGGGCCCTCGGATCCATCCCTAGCACAGGAAATATAAT  450

seq1  GTATAAATATCTGCCATGAAGCCATGGAGACAAGAATTTGTAAGATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATATCTGCCATGAAGCCATGGAGACAAGAATTTGTAAGATAGAA  500

seq1  ATGGTACCAGGGCTAACAAGATGGGTCAGTGAATAAATGTGCTTGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCAGGGCTAACAAGATGGGTCAGTGAATAAATGTGCTTGCCACC  550

seq1  AAGCCTAATAACCTCAATTTGATTTCTAGCACCTGCATGGTGGAAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAATAACCTCAATTTGATTTCTAGCACCTGCATGGTGGAAGGGGG  600

seq1  TAGACCTAACTCTTCCAAGTTGTCCCCTGGTGGCCACACACATGGTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTAACTCTTCCAAGTTGTCCCCTGGTGGCCACACACATGGTAAAG  650

seq1  CACACTCACAGATGTGTATGCATGTCCATTCATATATACATACATACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACAGATGTGTATGCATGTCCATTCATATATACATACATACACA  700

seq1  TTGAAGGCATGCAATAAATAATAAACCCAAGACAGTCATAATATTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGCATGCAATAAATAATAAACCCAAGACAGTCATAATATTTTCCT  750

seq1  TTTCAAGCCATAAATTTTAGTTTTTCGGACCTAGATAACTGTTTATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCCATAAATTTTAGTTTTTCGGACCTAGATAACTGTTTATTATA  800

seq1  AATCTCTAAGTGCATCCTGGCATGGGAGGATGTTTGTATGTGCACAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAAGTGCATCCTGGCATGGGAGGATGTTTGTATGTGCACAAACT  850

seq1  GTTTAAATTCTCACTGAACATCACACACACAATAAAGGAAAATAAAACAA  900
      |||| ||||||||||||||||||||||| ||||||||||||   ||||||
seq2  GTTT-AATTCTCACTGAACATCACACACTCAATAAAGGAAA--TAAACAA  897

seq1  ATAAAGACAATGAAGTGTCCCTGAAGATTATTGTTACCAAATTGCACCTC  950
      |||||||| |||||||||||||| ||||   ||||||| |||||||||||
seq2  ATAAAGAC-ATGAAGTGTCCCTG-AGAT--ATGTTACC-AATTGCACCTC  942

seq1  AGAAACTCTCAAGGGGAGAAAAGTACTTCCAGGCTGGGGGACAAGCTCTT  1000
      || ||||||| ||||||||||||||||||||||||||||||| ||||| |
seq2  AG-AACTCTC-AGGGGAGAAAAGTACTTCCAGGCTGGGGGAC-AGCTC-T  988

seq1  GCAAGGCTGCGAGATGCTAGGTACTGCTCGAGGACATGTGTGTAGCTGAT  1050
      |||| ||||| |||||||||||||||||||||   |||  ||||||||||
seq2  GCAA-GCTGCTAGATGCTAGGTACTGCTCGAG--AATGGTTGTAGCTGAT  1035

seq1  GGTGACAAGGCAGAGGTTGTCTGTTTGGAAACCCAAATCCAGACGTGCAA  1100
       ||||||  ||| | | ||||||||||  ||||| ||||||||| ||  |
seq2  -GTGACA--GCA-AAGATGTCTGTTTG--AACCC-AATCCAGAC-TGGCA  1077

seq1  CTCAGAGGCCTGAGAAGATGCGGGGTTTCCCCACTGTGAG-CTGTG  1145
      ||| |||  | | ||||||||||| ||   |||||||||| |||||
seq2  CTCGGAG--CCGGGAAGATGCGGGATT---CCACTGTGAGACTGTG  1118