BAC Information

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BAC

Clone NameB6Ng01-133N18
Chromosome12 (Build37)
Map Location 12,581,409 - 12,715,963
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N18.bB6Ng01-133N18.g
ACCDH934302DH934303
length1,054900
definitionDH934302|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N18, 5' end.DH934303|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,581,409 - 12,582,466)(12,715,063 - 12,715,963)
sequence
gaattccacatcatgaaggaccgtacccttgaactttgggtcaaaataaa
ctctccctggagttgattttgtcaaatgaccagaaaagaggctaagatag
aagttatagcaactttttacattttttatacttaataaagtacatttaac
atatgtgaagctaagtatacaaagagaagctaacatacttcctaccacat
ttggaaatcacaactcatacctattggacccaagttttgcatatttagat
aaatctgcatttttttaacatagcattgtctagttaccaaagaaacaaat
tttgcacaatatgttttcacatttctcactttgctagtaagtattttata
aaaatgtttttagaaaatctttgaacaatacaggtaattggaacttggac
caggtaataaatgcgagatggtcctcaggctggtagattgcctaaataag
cctgactgcatttttacctcagagtcacatggcatctttctgtctacctc
aaaaccacaaaaggtgcactgtgtcgtcagactcaaatttggcctttcag
gaaccccttcccttttctgccatggtaaactgtgcataccaatgtatata
cattaccattttagccgtcttgaagaatatcatccagtggtactcatatt
gctgtgcactcgttttcagaagtttgtcctcatcccaactggcatttggt
acccattaaacagctgtccattatcttttccatccagcttccaatggcca
ccattctacttcctttctctaaaaattggactattctatatagatggtgt
tatgtgacagtcttttgtgtttacttcactcagtgtcatatttccaaggt
tgattggagttgtgtcacctattagaatgtctttcctcttccaggttgaa
taagagtctatggtatgaatacactgtattgtgttatgcttgcattcatt
cctcaacatttggggtacttcttcctgtctgctataatggaaaatgcgtc
taggaaatgcagatgtacaaatactcatcaagtgctactttatttcttgg
agta
gaattcaaaggcggttggagggattttctttctcttaatcttggtgactg
ggctcaccatctgattaaccttctacagcctttactgcgaagaagcaggt
cttcagccacctctcccagagatttcccctcgtttgcaggacaaagccct
ggatcagcaccgccataaccatggaaacaatagccagccttctgtgtgta
ttcattttccaaagttgcctcgactctgttttgacccatgcattcttcca
catactttgctgattgagaaactgaagaacgagtcggagaccatttcttt
ataactttacacaggctacaggttaatttgttcatctcgctggctgactc
gagctgtctactgctctgtagtttgctctttaatcttgttctttgttctc
tgtgtggtttttttgtttctgtattgctttgctatgaggtctcattatgt
agtcaaaggtgacctggaagttgctatgttgcccaggctggcctcaagcc
aatggtggtcctgtttcagccttctgggctctgaattcacaggcatatac
cagtaagtctgatttcttttcttttctttttttaaatctgtctttctctc
cctgactctccttcttcctctctttcttccatgctgacactgacttaaaa
ctcaccatggagctgaggctgcttttcctcttccgatcctctaccaggaa
gtgctgggatcctctaccaggaagtgctgggatcctctaccaggaagtgc
tgggatcctctaccaggaagtgctgggatcctctaccaggaagtgctggg
atcctctaccaggaagtgctgggatcctctaccaggaagtactgggatca
caggcccatgtttccttcctttccttcccttcccttcccttaccttacct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12581409_12582466
seq2: B6Ng01-133N18.b_49_1102

seq1  GAATTCCACATCATGAAGGACCGTACCCTTGAACTTTGGGTCAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCATGAAGGACCGTACCCTTGAACTTTGGGTCAAAATAAA  50

seq1  CTCTCCCTGGAGTTGATTTTGTCAAATGACCAGAAAAGAGGCTAAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGGAGTTGATTTTGTCAAATGACCAGAAAAGAGGCTAAGATAG  100

seq1  AAGTTATAGCAACTTTTTACATTTTTTATACTTAATAAAGTACATTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATAGCAACTTTTTACATTTTTTATACTTAATAAAGTACATTTAAC  150

seq1  ATATGTGAAGCTAAGTATACAAAGAGAAGCTAACATACTTCCTACCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGAAGCTAAGTATACAAAGAGAAGCTAACATACTTCCTACCACAT  200

seq1  TTGGAAATCACAACTCATACCTATTGGACCCAAGTTTTGCATATTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCACAACTCATACCTATTGGACCCAAGTTTTGCATATTTAGAT  250

seq1  AAATCTGCATTTTTTTAACATAGCATTGTCTAGTTACCAAAGAAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCATTTTTTTAACATAGCATTGTCTAGTTACCAAAGAAACAAAT  300

seq1  TTTGCACAATATGTTTTCACATTTCTCACTTTGCTAGTAAGTATTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAATATGTTTTCACATTTCTCACTTTGCTAGTAAGTATTTTATA  350

seq1  AAAATGTTTTTAGAAAATCTTTGAACAATACAGGTAATTGGAACTTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTTAGAAAATCTTTGAACAATACAGGTAATTGGAACTTGGAC  400

seq1  CAGGTAATAAATGCGAGATGGTCCTCAGGCTGGTAGATTGCCTAAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATAAATGCGAGATGGTCCTCAGGCTGGTAGATTGCCTAAATAAG  450

seq1  CCTGACTGCATTTTTACCTCAGAGTCACATGGCATCTTTCTGTCTACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGCATTTTTACCTCAGAGTCACATGGCATCTTTCTGTCTACCTC  500

seq1  AAAACCACAAAAGGTGCACTGTGTCGTCAGACTCAAATTTGGCCTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACAAAAGGTGCACTGTGTCGTCAGACTCAAATTTGGCCTTTCAG  550

seq1  GAACCCCTTCCCTTTTCTGCCATGGTAAACTGTGCATACCAATGTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTTCCCTTTTCTGCCATGGTAAACTGTGCATACCAATGTATATA  600

seq1  CATTACCATTTTAGCCGTCTTGAAGAATATCATCCAGTGGTACTCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCATTTTAGCCGTCTTGAAGAATATCATCCAGTGGTACTCATATT  650

seq1  GCTGTGCACTCGTTTTCAGAAGTTTGTCCTCATCCCAACTGGCATTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCACTCGTTTTCAGAAGTTTGTCCTCATCCCAACTGGCATTTGGT  700

seq1  ACCCATTAAACAGCTGTCCATTATCTTTTCCATCCAGCTTCCAATGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTAAACAGCTGTCCATTATCTTTTCCATCCAGCTTCCAATGGCCA  750

seq1  CCATTCTACTTCCTTTCTCTAAAAATTGGACTATTCTATATAGATGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTACTTCCTTTCTCTAAAAATTGGACTATTCTATATAGATGGTGT  800

seq1  TATGTGACAGTCTTTTGTGTTTACTTCACTCAGTGTCATATTTCCAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACAGTCTTTTGTGTTTACTTCACTCAGTGTCATATTTCCAAGGT  850

seq1  TGATTGGAGTTGTGTCACCTATTAGAATGTCTTTCCTCTTCCAGGTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGAGTTGTGTCACCTATTAGAATGTCTTTCCTCTTCCAGGTTGAA  900

seq1  TAAGAGTCTATGGTATGAATACACTGTATTGTGTTATGCTTGCATTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTATGGTATGAATACACTGTATTGTGTTATGCTTGCATTCATT  950

seq1  CCTCAACATTTGGGTTACTTCTTCCTGTCTGCTATAATGGAAAATGCGTC  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCAACATTTGGGGTACTTCTTCCTGTCTGCTATAATGGAAAATGCGTC  1000

seq1  TAGGAAATGCAGATGTACAAATACCTCATCAAGTGCTTACTTTTATTTCT  1050
      ||||||||||||||||||||||| |||||||||||| ||| |||||||| 
seq2  TAGGAAATGCAGATGTACAAATA-CTCATCAAGTGC-TAC-TTTATTTC-  1046

seq1  TTGGAGTA  1058
      ||||||||
seq2  TTGGAGTA  1054

seq1: chr12_12715063_12715963
seq2: B6Ng01-133N18.g_67_966 (reverse)

seq1  AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGAAACATGGGCCT  50
      ||| |||| ||||||||||||||||| |||| ||||||||||||||||||
seq2  AGGTAAGGTAAGGGAAGGGAAGGGAA-GGAAAGGAAGGAAACATGGGCCT  49

seq1  GTGATCCCAGTACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCCAGTACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGA  99

seq1  TCCCAGCACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGATCCC  149

seq1  AGCACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGATCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCCTGGTAGAGGATCCCAGCACTTCCTGGTAGAGGATCCCAGCA  199

seq1  CTTCCTGGTAGAGGATCGGAAGAGGAAAAGCAGCCTCAGCTCCATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTAGAGGATCGGAAGAGGAAAAGCAGCCTCAGCTCCATGGTGA  249

seq1  GTTTTAAGTCAGTGTCAGCATGGAAGAAAGAGAGGAAGAAGGAGAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGTCAGTGTCAGCATGGAAGAAAGAGAGGAAGAAGGAGAGTCAG  299

seq1  GGAGAGAAAGACAGATTTAAAAAAAGAAAAGAAAAGAAATCAGACTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGACAGATTTAAAAAAAGAAAAGAAAAGAAATCAGACTTACT  349

seq1  GGTATATGCCTGTGAATTCAGAGCCCAGAAGGCTGAAACAGGACCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGCCTGTGAATTCAGAGCCCAGAAGGCTGAAACAGGACCACCAT  399

seq1  TGGCTTGAGGCCAGCCTGGGCAACATAGCAACTTCCAGGTCACCTTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAGGCCAGCCTGGGCAACATAGCAACTTCCAGGTCACCTTTGAC  449

seq1  TACATAATGAGACCTCATAGCAAAGCAATACAGAAACAAAAAAACCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGACCTCATAGCAAAGCAATACAGAAACAAAAAAACCACAC  499

seq1  AGAGAACAAAGAACAAGATTAAAGAGCAAACTACAGAGCAGTAGACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAAGAACAAGATTAAAGAGCAAACTACAGAGCAGTAGACAGCT  549

seq1  CGAGTCAGCCAGCGAGATGAACAAATTAACCTGTAGCCTGTGTAAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCAGCCAGCGAGATGAACAAATTAACCTGTAGCCTGTGTAAAGTTA  599

seq1  TAAAGAAATGGTCTCCGACTCGTTCTTCAGTTTCTCAATCAGCAAAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGGTCTCCGACTCGTTCTTCAGTTTCTCAATCAGCAAAGTAT  649

seq1  GTGGAAGAATGCATGGGTCAAAACAGAGTCGAGGCAACTTTGGAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAATGCATGGGTCAAAACAGAGTCGAGGCAACTTTGGAAAATGA  699

seq1  ATACACACAGAAGGCTGGCTATTGTTTCCATGGTTATGGCGGTGCTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAGAAGGCTGGCTATTGTTTCCATGGTTATGGCGGTGCTGATC  749

seq1  CAGGGCTTTGTCCTGCAAACGAGGGGAAATCTCTGGGAGAGGTGGCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTGTCCTGCAAACGAGGGGAAATCTCTGGGAGAGGTGGCTGAA  799

seq1  GACCTGCTTCTTCGCAGTAAAGGCTGTAGAAGGTTAATCAGATGGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTTCTTCGCAGTAAAGGCTGTAGAAGGTTAATCAGATGGTGAGC  849

seq1  CCAGTCACCAAGATTAAGAGAAAGAAAATCCCTCCAACCGCCTTTGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCAAGATTAAGAGAAAGAAAATCCCTCCAACCGCCTTTGAATT  899

seq1  C  901
      |
seq2  C  900