BAC Information

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BAC

Clone NameB6Ng01-134L01
ChromosomeY (Build37)12 (Build37)
Map Location 1,120,568 - 1,121,00927,749,113 - 27,750,272
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L01.bB6Ng01-134L01.g
ACCDH934924DH934925
length7491,154
definitionDH934924|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L01, 5' end.DH934925|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,568 - 1,121,009)(27,749,113 - 27,750,272)
sequence
gaattctttgttcagttctgagccccattttttttttttttttttttggg
ttttgcttttgtttttgttttttttttctttttttccattttttattagg
tatttaactcatttacatttccaatgctataccaaaagtcccccatatcc
acccacccccactcccctgcccacccactccccctttttggccctggtgt
tcccctgtactggggcatataaagtttgcaagtccaatgggcctctcttt
ccagtgatggccgactaggccatcttttgatatatatgcagctagagtca
agagctccggggtactggttagctcataatgttgttccacctatagggtt
gcagatccctttagctccttgggtactttctctagctcctccattgggag
ccctgtgatccatccattagctgactgtgagcatccacttctgtgtttgc
tgggccccggcatagtctcacaagagacagctacatctgcgtcctttcaa
taaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattat
ggggtggatccctggatatggcagtctctacatgggccatcctttcatct
cagctccaaactctgtctctgtaactccttccatgggtgttttgttccca
aatctaaagaggggcatagtgtccacactatagtcttcattcttcttgaa
tttcatgtgtttagcaaattatatcttatatcttgggtatcctaaggtt
gaattctgttcagaagatgtttcctctattcaagacatggaaggaataga
aaatacagtttaaggaattgcactgagtagatggctattctcttgggagg
cgtacaaaagctatataatcaaaacagcagcaacttcaacttattcttta
tttctaggaaaggacttgtgttgaagtcttgcatacatacataagtgcat
acatacatatacatgcatacatctatacatatacacatatacatatacag
acatatacaaacacatatacatacacagacatacatacatattcacatat
acatacacgtacatacatacacacatatacacatgcacacatcgtataca
atacacacacacacacacacacagtgggagggggagagcagcaagcagat
tagctgatcctaacaatatcaacatttcttgaaagtagatatccagactc
tgtcgaggctctgtgaaatgaaattttacatatctcacctaaatacacac
caagctctaattttccctcacatcacatgactcaatgatagagtatccct
aaacagatccaaaacgaagcttttgattctgactcaatgcactaaagcat
gtgtgtgatcagagaggaagtctagaaatagtgaccaggctgcttctcta
gtttaacaaggcttctgctgacgacggatcgatggagccaagccaccaaa
gaacatctcagccttataccgtcgatgctttggacttaccatcgcatcag
agacttctctgtgaagatcaatcttggttttgaattcagtgtgggtgagg
ggggggctgctgactcaaggagcctgagggaaccagggcctgctgctaaa
acaacagcccgtccccagcaggacaaacacacagaaggcagaatgaatgg
cctcatctacacgccagctatttgatatgcagatcgggccgcagcttctt
caatagctgagcactccatagcagcaggtgcagcccaagtgagtggcctt
ccttccttgaaagagctgggctgctcccttctctcctcagccttaactgg
ttctggagcgtatgatcttaccccctttaatgagacgatcctttttacag
gctggaatgaccttctaatctttacactctgccctatatccgtagcctgc
atga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120568_1121009
seq2: B6Ng01-134L01.b_102_540

seq1  TTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAAC  50
       ||||| |||||||||  | ||||||||||||||||||||||||||||||
seq2  -TTTTTGTTTTTTTTT--TCTTTTTTTCCATTTTTTATTAGGTATTTAAC  47

seq1  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  97

seq1  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGT  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGT  147

seq1  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  197

seq1  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  247

seq1  GGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCC  300
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  GGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC  297

seq1  CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGA  350
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGA  347

seq1  TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCC  397

seq1  GGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAA  442
      |||||||||||||||||||||||||||||||| |||||||||
seq2  GGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAA  439

seq1: chr12_27749113_27750272
seq2: B6Ng01-134L01.g_69_1222

seq1  GAATTCTGTTCAGAAGATGTTTCCTCTATTCAAGACATGGAAGGAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAGAAGATGTTTCCTCTATTCAAGACATGGAAGGAATAGA  50

seq1  AAATACAGTTTAAGGAATTGCACTGAGTAGATGGCTATTCTCTTGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTTTAAGGAATTGCACTGAGTAGATGGCTATTCTCTTGGGAGG  100

seq1  CGTACAAAAGCTATATAATCAAAACAGCAGCAACTTCAACTTATTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAAAGCTATATAATCAAAACAGCAGCAACTTCAACTTATTCTTTA  150

seq1  TTTCTAGGAAAGGACTTGTGTTGAAGTCTTGCATACATACATAAGTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGAAAGGACTTGTGTTGAAGTCTTGCATACATACATAAGTGCAT  200

seq1  ACATACATATACATGCATACATCTATACATATACACATATACATATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATACATGCATACATCTATACATATACACATATACATATACAG  250

seq1  ACATATACAAACACATATACATACACAGACATACATACATATTCACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACAAACACATATACATACACAGACATACATACATATTCACATAT  300

seq1  ACATACACGTACATACATACACACATATACACATGCACACATCGTATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACGTACATACATACACACATATACACATGCACACATCGTATACA  350

seq1  ATACACACACACACACACACACAGTGGGAGGGGGAGAGCAGCAAGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACAGTGGGAGGGGGAGAGCAGCAAGCAGAT  400

seq1  TAGCTGATCCTAACAATATCAACATTTCTTGAAAGTAGATATCCAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATCCTAACAATATCAACATTTCTTGAAAGTAGATATCCAGACTC  450

seq1  TGTCGAGGCTCTGTGAAATGAAATTTTACATATCTCACCTAAATACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAGGCTCTGTGAAATGAAATTTTACATATCTCACCTAAATACACAC  500

seq1  CAAGCTCTAATTTTCCCTCACATCACATGACTCAATGATAGAGTATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTAATTTTCCCTCACATCACATGACTCAATGATAGAGTATCCCT  550

seq1  AAACAGATCCAAAACGAAGCTTTTGATTCTGACTCAATGCACTAAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATCCAAAACGAAGCTTTTGATTCTGACTCAATGCACTAAAGCAT  600

seq1  GTGTGTGATCAGAGAGGAAGTCTAGAAATAGTGACCAGGCTGCTTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATCAGAGAGGAAGTCTAGAAATAGTGACCAGGCTGCTTCTCTA  650

seq1  GTTTAACAAGGCTTCTGCTGACGACGGATCGATGGAGCCAAGCCACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACAAGGCTTCTGCTGACGACGGATCGATGGAGCCAAGCCACCAAA  700

seq1  GAACATCTCAGCCTTATACCGTCGATGCTTTGGACTTACCATCGCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTCAGCCTTATACCGTCGATGCTTTGGACTTACCATCGCATCAG  750

seq1  AGACTTCTCTGTGAAGATCAATCTTGGTTTTGAATTCAGTGTGGGTGA-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGACTTCTCTGTGAAGATCAATCTTGGTTTTGAATTCAGTGTGGGTGAGG  800

seq1  GGGGGGCTGCTGACTCAGGGAGCCTGAGGGAACCAGGGCCTGCTGCT-AA  848
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GGGGGGCTGCTGACTCAAGGAGCCTGAGGGAACCAGGGCCTGCTGCTAAA  850

seq1  ACAACAGCCCGTCCCCAGCAGGACAAACACACAGAAGGCAGAATGAATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCCCGTCCCCAGCAGGACAAACACACAGAAGGCAGAATGAATGG  900

seq1  CCTCATCTACACGCCAGCTATTTGATATGCAGATCGGGCCGCAGGCCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  CCTCATCTACACGCCAGCTATTTGATATGCAGATCGGGCCGCA-GCTTCT  949

seq1  TCAATAGCTGAGCACTCCATAGGCAGCAGGTGCAGCCCAAGTGAGTGGCC  998
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAATAGCTGAGCACTCCATA-GCAGCAGGTGCAGCCCAAGTGAGTGGCC  998

seq1  TTCCCTCCTTGAAAGAGCTGGGCTGCCTCCCTCTCTCCCTCCAGCCCTTA  1048
      |||| |||||||||||||||||||||  || |||||||   ||| |||||
seq2  TTCCTTCCTTGAAAGAGCTGGGCTGCTCCCTTCTCTCC--TCAG-CCTTA  1045

seq1  ACTGTTTCTGGAGCGCTATGATCTTCACCCCTTTTAAATGTAGACGATCC  1098
      |||| |||||||||| |||||||||  |||||||  |||| |||||||||
seq2  ACTGGTTCTGGAGCG-TATGATCTTACCCCCTTT--AATG-AGACGATCC  1091

seq1  -TTTTACAGGCTGGATAGACCTTCTA--CTTTTCACTCTGCCC-CTATCC  1144
       ||||||||||||||  |||||||||  |||| ||||||||||  |||||
seq2  TTTTTACAGGCTGGAATGACCTTCTAATCTTTACACTCTGCCCTATATCC  1141

seq1  GTAAGCCTGGGCATGA  1160
      || |||||  ||||||
seq2  GT-AGCCT--GCATGA  1154