BAC Information

Click to search

BAC

Clone NameB6Ng01-134N09
Chromosome12 (Build37)
Map Location 109,449,812 - 109,680,756
singlet/doubletdoublet
Overlap geneEG668158, 1600002O04Rik, Cyp46a1, Eml1
Upstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk
Downstream geneEvl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N09.bB6Ng01-134N09.g
ACCDH935033DH935034
length1,0781,005
definitionDH935033|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N09, 5' end.DH935034|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,679,873 - 109,680,756)(109,449,812 - 109,450,818)
sequence
gaattcacgtcagaaaacaccacttttaaaaatcaaacactcagggctgg
agagatggctcagcagttaagagcactgactgctcttctagaggtcctga
gttcaattcccagcacccacatgggggctcctgaccatctgtaatgggat
ctgacaccctcttctggcacacaagtgtacaagcagcagagctctcataa
aagttctgttttgttttaaatcaaatgttccagtgtaaagagctgcaagc
acatttttttcacttttctgctgaggagtggtggtgtggaccgtgaatct
tcattttcagtaaaccagtgccgttctgtgagagcagaaagactggtgtg
cgctgagttgtctcagacggggttggtgggtgctgagtggcggggaggcc
atgcacacggcagacacgcccgtgtgtgctcctaaccaaggctgcagtgg
agctgtgcgctacacatctgtgagtgctggcagacacaccctggattcat
catgaatttgacatttttggtggttttgcattcagaaacctttctctcct
gcccatttttaccatttccccacgtttggtcacgcaatgccacgtggggt
tggaaccacagtttccagagtccggttctggcggaccctgtgtggcaggt
gattagtacatgtcctcatggctctccagggacttgattcacctaaatat
caggatttttatgaaaatgtcatccaagtatcaagccagtgtccacaggt
gaggctagtgggtccagtatgtgggtcaccatgatatactagtccctgta
gctgcatagtcttccctaagctactgggctctaaaatgccaatacactgg
aagggtctaaggtagtatccacagccacacttgaagctagctccacacag
gggcctgcacatgcatgctcaggattctggattctctctctggcaccaag
acaaggcaaaaccaaagcaaaccctttggcattatagacaagcagaccca
ttaaactaagaagagccacagggagccactgaaaaccatgtggtttcatt
ttcggagtcttgaattgcctgctagtga
gaattctccagagcctgcctgctaggaggggaaagaagccagtcggatcc
agggagggctgaagggccaaggcccctaagccaagaccctgccctagccc
aggtgctgtgcttagtaagtgtgtcaccctctacacagccatcggtcggc
tcaagcacaccctcccgggcaggtgctcacctctgttcgaagactgcctc
tactatcagacagagagaaccccacccaaagcaggcctgggcgggtgttc
gtaatccacaaggaccagtgcaaaccagagtggggaggaaggatggacac
acacatgctgccctgaggtggctcccttaggagaaaaaaaaatccctgta
tgccaggctagtgacctaagaccagaagccagagtcactaagggtgggcc
agggaaactgcgtggtggacaggtgtggcccagactgtccaccttcaggc
caaccagccccacaggagacagccttcctccctaagccactgatacttca
aagggaaggaggaacccacgaggcagataaaaactgcagaggaatgtcca
taaatcggcaggctgctgagttccccagacaaagcaggaaggaaagaggc
caggctggctggcaggaagcgggcagcagccctacggagggcttcctcct
ccctcccagcagccccctcacccagcctggagggatccccacatttccag
ggctggcctcctgccagtcacagggccttggccacctgcagtagagacag
tgaaagagagctcagacagaagacagaggtgccggaccaccagacaaaga
ggtggggtagtcactccacatcactataccaccctccaacctgtagagac
cacagagtccaaccagagaagaatctgccattgaggccacagggtttatt
atacaggggtcttgttgttcaaagccagggggtcagtacagagggctggg
tttgttttctctccttcttgtatgacccaattccccccgagattcttggg
taccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_109679873_109680756
seq2: B6Ng01-134N09.b_239_1123 (reverse)

seq1  TCACTTAGCA-GCAATTTCAGACTCAGAAAATGAAA-CACATGGTTTTCA  48
      |||| ||||| ||||||  |||||| |||||||||| |||||||||||||
seq2  TCAC-TAGCAGGCAATTCAAGACTCCGAAAATGAAACCACATGGTTTTCA  49

seq1  GTGGCTTCCTGTGGCTTCTCTTAGTTTAATGGTTCTGCTTGTCTATAATG  98
      |||||| |||||||||  |||||||||||||| |||||||||||||||||
seq2  GTGGCTCCCTGTGGCTCTTCTTAGTTTAATGGGTCTGCTTGTCTATAATG  99

seq1  CC-AAGGGTTTGCTTTGGTTTTGCCTTGTCTGTGGTGCAAGAGAGAGAAT  147
      || |||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CCAAAGGGTTTGCTTTGGTTTTGCCTTGTCT-TGGTGCCAGAGAGAGAAT  148

seq1  CCAGAATCCTGAGCATGCATGTGCAGGCCCCTGTGTGGAGCTAGCTTCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCCTGAGCATGCATGTGCAGGCCCCTGTGTGGAGCTAGCTTCAA  198

seq1  GTGTGGCTGTGGGTACTACCTTAGACCCTTCCAGTGTATTGGCATTTTAG  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGTGGATACTACCTTAGACCCTTCCAGTGTATTGGCATTTTAG  248

seq1  AGCCCAGTAGCTTAGGGAAGACTATGCAGCTACAGGGACTAGTATATCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTAGCTTAGGGAAGACTATGCAGCTACAGGGACTAGTATATCAT  298

seq1  GGTGACCCACATACTGGACCCACTAGCCTCACCTGTGGACACTGGCTTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCACATACTGGACCCACTAGCCTCACCTGTGGACACTGGCTTGA  348

seq1  TACTTGGATGACATTTTCATAAAAATCCTGATATTTAGGTGAATCAAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGATGACATTTTCATAAAAATCCTGATATTTAGGTGAATCAAGTC  398

seq1  CCTGGAGAGCCATGAGGACATGTACTAATCACCTGCCACACAGGGTCCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGCCATGAGGACATGTACTAATCACCTGCCACACAGGGTCCGC  448

seq1  CAGAACCGGACTCTGGAAACTGTGGTTCCAACCCCACGTGGCATTGCGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCGGACTCTGGAAACTGTGGTTCCAACCCCACGTGGCATTGCGTG  498

seq1  ACCAAACGTGGGGAAATGGTAAAAATGGGCAGGAGAGAAAGGTTTCTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACGTGGGGAAATGGTAAAAATGGGCAGGAGAGAAAGGTTTCTGAA  548

seq1  TGCAAAACCACCAAAAATGTCAAATTCATGATGAATCCAGGGTGTGTCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACCACCAAAAATGTCAAATTCATGATGAATCCAGGGTGTGTCTG  598

seq1  CCAGCACTCACAGATGTGTAGCGCACAGCTCCACTGCAGCCTTGGTTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCACAGATGTGTAGCGCACAGCTCCACTGCAGCCTTGGTTAGG  648

seq1  AGCACACACGGGCGTGTCTGCCGTGTGCATGGCCTCCCCGCCACTCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACGGGCGTGTCTGCCGTGTGCATGGCCTCCCCGCCACTCAGCA  698

seq1  CCCACCAACCCCGTCTGAGACAACTCAGCGCACACCAGTCTTTCTGCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAACCCCGTCTGAGACAACTCAGCGCACACCAGTCTTTCTGCTCT  748

seq1  CACAGAACGGCACTGGTTTACTGAAAATGAAGATTCACGGTCCACACCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACGGCACTGGTTTACTGAAAATGAAGATTCACGGTCCACACCAC  798

seq1  CACTCCTCAGCAGAAAAGTGAAAAAAATGTGCTTGCAGCTCTTTACACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCAGCAGAAAAGTGAAAAAAATGTGCTTGCAGCTCTTTACACTG  848

seq1  GAACATTTGATTTAAAACAAAACAGAACTTTTATGAG  884
      |||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGATTTAAAACAAAACAGAACTTTTATGAG  885

seq1: chr12_109449812_109450818
seq2: B6Ng01-134N09.g_66_1070

seq1  GAATTCTCCAGAGCCTGCCTGCTAGGAGGGGAAAGAAGCCAGTCGGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAGCCTGCCTGCTAGGAGGGGAAAGAAGCCAGTCGGATCC  50

seq1  AGGGAGGGCTGAAGGGCCAAGGCCCCTAAGCCAAGACCCTGCCCTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGCTGAAGGGCCAAGGCCCCTAAGCCAAGACCCTGCCCTAGCCC  100

seq1  AGGTGCTGTGCTTAGTAAGTGTGTCACCCTCTACACAGCCATCGGTCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGTGCTTAGTAAGTGTGTCACCCTCTACACAGCCATCGGTCGGC  150

seq1  TCAAGCACACCCTCCCGGGCAGGTGCTCACCTCTGTTCGAAGACTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACACCCTCCCGGGCAGGTGCTCACCTCTGTTCGAAGACTGCCTC  200

seq1  TACTATCAGACAGAGAGAACCCCACCCAAAGCAGGCCTGGGCGGGTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCAGACAGAGAGAACCCCACCCAAAGCAGGCCTGGGCGGGTGTTC  250

seq1  GTAATCCACAAGGACCAGTGCAAACCAGAGTGGGGAGGAAGGATGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCACAAGGACCAGTGCAAACCAGAGTGGGGAGGAAGGATGGACAC  300

seq1  ACACATGCTGCCCTGAGGTGGCTCCCTTAGGAGAAAAAAAAATCCCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTGCCCTGAGGTGGCTCCCTTAGGAGAAAAAAAAATCCCTGTA  350

seq1  TGCCAGGCTAGTGACCTAAGACCAGAAGCCAGAGTCACTAAGGGTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCTAGTGACCTAAGACCAGAAGCCAGAGTCACTAAGGGTGGGCC  400

seq1  AGGGAAACTGCGTGGTGGACAGGTGTGGCCCAGACTGTCCACCTTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTGCGTGGTGGACAGGTGTGGCCCAGACTGTCCACCTTCAGGC  450

seq1  CAACCAGCCCCACAGGAGACAGCCTTCCTCCCTAAGCCACTGATACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCCCCACAGGAGACAGCCTTCCTCCCTAAGCCACTGATACTTCA  500

seq1  AAGGGAAGGAGGAACCCACGAGGCAGATAAAAACTGCAGAGGAATGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGAGGAACCCACGAGGCAGATAAAAACTGCAGAGGAATGTCCA  550

seq1  TAAATCGGCAGGCTGCTGAGTTCCCCAGACAAAGCAGGAAGGAAAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGGCAGGCTGCTGAGTTCCCCAGACAAAGCAGGAAGGAAAGAGGC  600

seq1  CAGGCTGGCTGGCAGGAAGCGGGCAGCAGCCCTACGGAGGGCTTCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCTGGCAGGAAGCGGGCAGCAGCCCTACGGAGGGCTTCCTCCT  650

seq1  CCCTCCCAGCAGCCCCCTCACCCAGCCTGGAAGGGATCCCCACA-TTCCA  699
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CCCTCCCAGCAGCCCCCTCACCCAGCCTGG-AGGGATCCCCACATTTCCA  699

seq1  GGGCTGGCCTCCTGCCAGTCACAGGGCCTTGGCCACCTGCAGGTAGAGAC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGCTGGCCTCCTGCCAGTCACAGGGCCTTGGCCACCTGCA-GTAGAGAC  748

seq1  AGTGAAAGAGAGCTCAGACAGAAGACAGAGGTGCCGGACCACCAGACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGAGAGCTCAGACAGAAGACAGAGGTGCCGGACCACCAGACAAA  798

seq1  GAGGTGGGGTAGTCACTCCACATCACTATACCACCC-CCAACCTGTAGAG  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGTGGGGTAGTCACTCCACATCACTATACCACCCTCCAACCTGTAGAG  848

seq1  ACCACAGAGTCCAACCAGAGAAGAAGTCTGCCAATGAGGCCACAGGGTAT  898
      ||||||||||||||||||||||||| ||||||| |||||||||||||| |
seq2  ACCACAGAGTCCAACCAGAGAAGAA-TCTGCCATTGAGGCCACAGGGTTT  897

seq1  A-TATACAGGGGTC-TGGTGTTCAAAGGCCAGGGGGCAGGTACAGAGGGC  946
      | |||||||||||| || |||||||| |||||||||   |||||||||||
seq2  ATTATACAGGGGTCTTGTTGTTCAAA-GCCAGGGGGTCAGTACAGAGGGC  946

seq1  TGGGGTTGTTTTCTCAGCCTCAGGTATGACCCAGACTCACACCCGAGACT  996
      |||| ||||||||||  | ||  |||||||||| | || | ||||||| |
seq2  TGGGTTTGTTTTCTCTCCTTCTTGTATGACCCA-ATTC-CCCCCGAGATT  994

seq1  CTTGGGTACCC  1007
      |||||||||||
seq2  CTTGGGTACCC  1005