BAC Information

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BAC

Clone NameB6Ng01-135C09
Chromosome12 (Build37)
Map Location 87,354,831 - 87,355,974
singlet/doubletsinglet
Overlap geneTtll5
Upstream geneYlpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C09.bB6Ng01-135C09.g
ACCDH935262DH935263
length1,0901,142
definitionDH935262|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C09, 5' end.DH935263|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatcgttccaagacttttaacatgaaggagtgttgaattttg
tcagatgctttttcaggatctaatgagatgatcatgtggttcttgtcttg
agtttgtttatatagtggattacattgatggatttctatatatcgaacca
tccctgcatccttggaatgaaacctacttgatcatggtgaatgatggttt
tgatgtgttcctggatttggtttgtgagaatttcattgactatttttgca
tcggtatttgtaagggaaattaattagtctgaagttctctttctttgttg
ggtctttgtatcaggataactgtggctttctagaacgacttaggtagtgt
tccttctggttctattttgtggaatagtttgaagagtattggtattaggt
ctttgaaggtctgatagagttctgcaccaaaaccatctggtcctggcctt
tttttggttgggagacttttaatgactgcttctatttcattaggggttaa
ggggctgtttagatggtttatctgttcctgatttaactttggtatctgtc
tagaaaattatccacttcatccagattttctagttctgttgagtataggc
ttttgtagtaggatttgacaattttttaaaatttcttcagtttcagttgt
tatgtctcccttttcatttctgattttgttaatttggatactgtctctgt
gccctccagttagtctggctaagggtttagtcatctgggaaatgaaagtc
aaaatgacccagagattccacctcacaccagtcagaatggctaagatcaa
atactcagtgacagcagatgctggcaaggatgcagagaaagaggaacact
cctccattgctgatgggattgcaagctggtacaaccactctggaaatcag
ttcctcagaaaattggacatagtactacctaaggcccagctataccaccc
ttgggcatatacccagaagatgctcacctgtaataaggacatatgcttcc
actatgttcatagcagccttatttatagtagccagaagctggaaagaacc
cagtggtcctccacagaggaaatggaaacagagaaagtgg
gaattctcttctcttaatgatcccttgagccaggtactcttgttattatt
cctgttttaaagtaggaaactgaatcaaagagatgtgaggatgttgttag
gttggtaaggagctagaactgctgtagaagtttcttttcttttaagtcag
cagaggcttactcacaaaaacacttgctgtgcaagcttggcagtctgagt
caggctccaggacccatggcagcaggacagcaccggctccctgaagtcgt
cctctgacctgcatatgtgtgccatacagacgttttctctcctcttcctc
tgtctcacaccatagaattactactactactactactactactactacta
ctactactactactactactactactattattactactactaatctttga
ggcctaacagtaggccttttacatgtgagagatgctatgtctccattagt
gctaacataaccccacagactaatgctagttttaaaggcaaataggaagc
tattttctggaacaatgcctcacagcatgccttttgatacttggattata
tttcttaaattctgaagaaatctttggtttcccccttctgtgcatttttg
atgctgagctgtttccggttttcccacactgctgcctgtcacaaagaaga
aaccacaaaaattcagcaaagcagaatttgcccaaagagctgcaattcca
tcttgggagtctgcagggcttccttgccagcagtgagttcagggcagcaa
gctgtaccttcaaaagtccagccctgtcacccaagtccagctcttcacta
gcaacacccaggggccccaggcccgggctggagagtctacaaggaatatg
tcgtcagactcagcatttgctttcagatggttagctgtgagctcctcagg
ctgcagagagtgtctcagtcatcaaaggataactaccgtctttagatgct
atatatccatactatgaagtaagtgatacctgcctcattattacaaagga
gtaaccaaagaccaagaggatcaggttactcgctgtaagcattcacatca
taaactggtccaagggggagagattctgcaggtggatccagggagaacct
ccttaggagtcacctctcttcttggtgcggtcagagagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87354831_87355974
seq2: B6Ng01-135C09.g_72_1213 (reverse)

seq1  CCCTC---CTGACCTGCACCCAGAAGAGAGTTGACTCCTAAAGAGTGTCG  47
      |||||   |||||| ||||| ||||||||| |||||||||| ||| ||  
seq2  CCCTCTCTCTGACC-GCACCAAGAAGAGAGGTGACTCCTAAGGAG-GTTC  48

seq1  TCCCTGGATCCAGCCTGCAGAA-CTCTCACCC-TGGGCCAGTTTACTGAT  95
      |||||||||||| ||||||||| ||||| ||| ||| |||||||| ||||
seq2  TCCCTGGATCCA-CCTGCAGAATCTCTCCCCCTTGGACCAGTTTA-TGAT  96

seq1  GTGAATGCTTTCAGCGAGTTAACTTGAT-CTCTTGGTCTTTGTTTACTCC  144
      |||||||||| ||||||| |||| |||| ||||||||||||| |||||||
seq2  GTGAATGCTTACAGCGAG-TAACCTGATCCTCTTGGTCTTTGGTTACTCC  145

seq1  TTTGTAATAATGGGGCAGTAATCACTTACTTCATAAGTATGGATATATAG  194
      |||||||||||| |||||  |||||||||||||| |||||||||||||||
seq2  TTTGTAATAATGAGGCAGGTATCACTTACTTCAT-AGTATGGATATATAG  194

seq1  CATCTAAAGGACGGTAGTTATCCTTTGATGACTGAGACACTCTCTGCAGC  244
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CATCTAAA-GACGGTAGTTATCCTTTGATGACTGAGACACTCTCTGCAG-  242

seq1  CCTGAGGAGCTCACAGCTAACCATCTGAAAGCAAATGCTGAGTCTGACGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAGCTCACAGCTAACCATCTGAAAGCAAATGCTGAGTCTGACGA  292

seq1  CATATTCCTTGTAGACTCTCCAGCCCGGGCCTGGGGCCCCTGGGTGTTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCTTGTAGACTCTCCAGCCCGGGCCTGGGGCCCCTGGGTGTTGC  342

seq1  TAGTGAAGAGCTGGACTTGGGTGACAGGGCTGGACTTTTGAAGGTACAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGAGCTGGACTTGGGTGACAGGGCTGGACTTTTGAAGGTACAGC  392

seq1  TTGCTGCCCTGAACTCACTGCTGGCAAGGAAGCCCTGCAGACTCCCAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCCTGAACTCACTGCTGGCAAGGAAGCCCTGCAGACTCCCAAGA  442

seq1  TGGAATTGCAGCTCTTTGGGCAAATTCTGCTTTGCTGAATTTTTGTGGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGCAGCTCTTTGGGCAAATTCTGCTTTGCTGAATTTTTGTGGTT  492

seq1  TCTTCTTTGTGACAGGCAGCAGTGTGGGAAAACCGGAAACAGCTCAGCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGTGACAGGCAGCAGTGTGGGAAAACCGGAAACAGCTCAGCAT  542

seq1  CAAAAATGCACAGAAGGGGGAAACCAAAGATTTCTTCAGAATTTAAGAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGCACAGAAGGGGGAAACCAAAGATTTCTTCAGAATTTAAGAAA  592

seq1  TATAATCCAAGTATCAAAAGGCATGCTGTGAGGCATTGTTCCAGAAAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCAAGTATCAAAAGGCATGCTGTGAGGCATTGTTCCAGAAAATA  642

seq1  GCTTCCTATTTGCCTTTAAAACTAGCATTAGTCTGTGGGGTTATGTTAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATTTGCCTTTAAAACTAGCATTAGTCTGTGGGGTTATGTTAGC  692

seq1  ACTAATGGAGACATAGCATCTCTCACATGTAAAAGGCCTACTGTTAGGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGAGACATAGCATCTCTCACATGTAAAAGGCCTACTGTTAGGCC  742

seq1  TCAAAGATTAGTAGTAGTAATAATAGTAGTAGTAGTAGTAGTAGTAGTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATTAGTAGTAGTAATAATAGTAGTAGTAGTAGTAGTAGTAGTAG  792

seq1  TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATTCTATGGTGTGAGACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATTCTATGGTGTGAGACA  842

seq1  GAGGAAGAGGAGAGAAAACGTCTGTATGGCACACATATGCAGGTCAGAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAGAGAAAACGTCTGTATGGCACACATATGCAGGTCAGAGG  892

seq1  ACGACTTCAGGGAGCCGGTGCTGTCCTGCTGCCATGGGTCCTGGAGCCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTTCAGGGAGCCGGTGCTGTCCTGCTGCCATGGGTCCTGGAGCCTG  942

seq1  ACTCAGACTGCCAAGCTTGCACAGCAAGTGTTTTTGTGAGTAAGCCTCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACTGCCAAGCTTGCACAGCAAGTGTTTTTGTGAGTAAGCCTCTG  992

seq1  CTGACTTAAAAGAAAAGAAACTTCTACAGCAGTTCTAGCTCCTTACCAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAAAAGAAAAGAAACTTCTACAGCAGTTCTAGCTCCTTACCAAC  1042

seq1  CTAACAACATCCTCACATCTCTTTGATTCAGTTTCCTACTTTAAAACAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACATCCTCACATCTCTTTGATTCAGTTTCCTACTTTAAAACAGG  1092

seq1  AATAATAACAAGAGTACCTGGCTCAAGGGATCATTAAGAGAAGAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAAGAGTACCTGGCTCAAGGGATCATTAAGAGAAGAGAATTC  1142