BAC Information

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BAC

Clone NameB6Ng01-136E13
Chromosome12 (Build37)4 (Build37)
Map Location 45,914,461 - 45,914,63818,704,332 - 18,705,452
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream geneStxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136E13.bB6Ng01-136E13.g
ACCDH936098DH936099
length7841,109
definitionDH936098|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E13, 5' end.DH936099|Mus musculus domesticus DNA, BAC clone: B6Ng01-136E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,914,461 - 45,914,638)(18,704,332 - 18,705,452)
sequence
gaattcaccatggatgcagtgtgataccatgtggcaaagagtctctgctc
tggagatccatagatagatagtaagagagagaaaggagggacgaaaacac
aaacagagttaacatatcacacgaatattaaatcctgaagaggggctgga
gcagttaatagggcaaagggtcttagttactatggtattttgaatacatt
tggtccccatagactaatatatttgaatgcttagtcaccagggagaagaa
ccatttgaaagaattaaaaggattagaagacatagtcttgttggagtagg
aatgatcttgtttgagaaagtatatcactgggtagtggacctttaggttt
caaaagccaaagccaggcctagtccttctctctctctctgcctagggcat
agcatgtagctctcaactatttttcagaaccatacttgccagctgctatg
ttccctgtgattctgataatggactaatcctctgaaactgtaagcaagcc
cttacttaagtgctttttctcataagagctgctgtgatcatggtgtctct
tcacagcaatagaacagtaattaagacagtattatcactgtgaataaaca
ctatgatcaagaaaacacattcaagaaaatatttagttgggggcttgttt
atagcctcagaggattatcttcacagcaagtatcgagactggcaggtatt
gtgttagattagattaatcatgatagattagagctgtatcatggtctaca
ggcaggagaaagagagagacagagagagagagag
gaattctgggtttcagagactaaaatccttgatcattctaaagttttggt
gtacctcttaacctctaaactgctaggtatgtcagtcaagatatttcatt
tgtagcttggcttgattctcgctacattatcccctaatatataactatgg
gtcagtctttgattcctaagtataaaatacgcatacacataccaactcct
aggatactgtttgtctctcgaagcatggggtttaaatcttcttcttgggc
ttaatatcctgaatttttatctcaaaactcacaagaatccactggcaata
agtctatgtctagtagattggtaaagcttgtcttaactctcattcctgaa
tatttcatcctcctatggaagataactgaacaaatttcagacaacttgac
aaagttcagataaatagacatacaacagataactagacaaacttccgata
tctggacaactttcttcatctactcaattctcaatttagactgattacag
attttttttaattacaccttaaggagatacatatttacattaagatctca
ggaattatttggcgtcttacattataataaaattacagaaatatatattc
aaatgggatattactacttatatagcacatcaacttagtaactgtacttg
gtgctgtaaaaataactgaagaaagtacttcagaaaagatttttgaggaa
atctcttaactcggagactctataaataaaaagataagtgaaacttgtct
ggaacataatgccacaaaaagaagcatgctaattcgagtcagaaagaatg
ggtacatagcaaggtaaaatcaggccaaaaccaaacagtaagtcagcagt
gattactatgactccatttgactgtatggtaaataataattcctcctctg
ggctttagtacatttagaccgctttccatcattggtacttattgaagaac
acagttttttcttgggatattccaatatttgactcaggttttcttagctt
acgacatcacaaatcttgaacttaaacacctaggtctcatcattctcatg
acaacttagattttctcatcacaacttcatcatggcctcccaggcattct
caatgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45914461_45914638
seq2: B6Ng01-136E13.b_569_831 (reverse)

seq1  CTCTCTCTCTCTCTGTCTCT-------------------ACC--------  23
      ||||||||||||||||||||                   |||        
seq2  CTCTCTCTCTCTCTGTCTCTCTCTTTCTCCTGCCTGTAGACCATGATACA  50

seq1  ---CAAAT-TATCAGTAGCAA-----------ATAGTTCAT--CAGT-GA  55
         | ||| |||||  |  ||           | | | | |  ||||   
seq2  GCTCTAATCTATCATGATTAATCTAATCTAACACAATACCTGCCAGTCTC  100

seq1  GATGCTGGCT-TCCAGAATTTCCCCTTCACCCATAGATGA----CCA---  97
      ||| || ||| |  |||   ||| ||    | ||| |  |    |||   
seq2  GATACTTGCTGTGAAGATAATCCTCTGAGGCTATAAACAAGCCCCCAACT  150

seq1  --------------------TTTTTGGTTCA-----TTCTTTTGCAGTCA  122
                          ||| | | |||     ||  ||  |||| |
seq2  AAATATTTTCTTGAATGTGTTTTCTTGATCATAGTGTTTATTCACAGTGA  200

seq1  CAATA---TC----TCAGTGTTCTATTGCTGTGAAGAGACACAATGACCA  165
       ||||   ||    | | |||||||||||||||||||||||| |||| ||
seq2  TAATACTGTCTTAATTACTGTTCTATTGCTGTGAAGAGACACCATGATCA  250

seq1  CAGAAACTCTTAT  178
      ||| | |||||||
seq2  CAGCAGCTCTTAT  263

seq1: chr4_18704332_18705452
seq2: B6Ng01-136E13.g_69_1177

seq1  GAATTCTGGGTTTCAGAGACTAAAATCCTTGATCATTCTAAAGTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTTTCAGAGACTAAAATCCTTGATCATTCTAAAGTTTTGGT  50

seq1  GTACCTCTTAACCTCTAAACTGCTAGGTATGTCAGTCAAGATATTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTTAACCTCTAAACTGCTAGGTATGTCAGTCAAGATATTTCATT  100

seq1  TGTAGCTTGGCTTGATTCTCGCTACATTATCCCCTAATATATAACTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTGGCTTGATTCTCGCTACATTATCCCCTAATATATAACTATGG  150

seq1  GTCAGTCTTTGATTCCTAAGTATAAAATACGCATACACATACCAACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTTGATTCCTAAGTATAAAATACGCATACACATACCAACTCCT  200

seq1  AGGATACTGTTTGTCTCTCGAAGCATGGGGTTTAAATCTTCTTCTTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTGTTTGTCTCTCGAAGCATGGGGTTTAAATCTTCTTCTTGGGC  250

seq1  TTAATATCCTGAATTTTTATCTCAAAACTCACAAGAATCCACTGGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCCTGAATTTTTATCTCAAAACTCACAAGAATCCACTGGCAATA  300

seq1  AGTCTATGTCTAGTAGATTGGTAAAGCTTGTCTTAACTCTCATTCCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTCTAGTAGATTGGTAAAGCTTGTCTTAACTCTCATTCCTGAA  350

seq1  TATTTCATCCTCCTATGGAAGATAACTGAACAAATTTCAGACAACTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCCTCCTATGGAAGATAACTGAACAAATTTCAGACAACTTGAC  400

seq1  AAAGTTCAGATAAATAGACATACAACAGATAACTAGACAAACTTCCGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAGATAAATAGACATACAACAGATAACTAGACAAACTTCCGATA  450

seq1  TCTGGACAACTTTCTTCATCTACTCAATTCTCAATTTAGACTGATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAACTTTCTTCATCTACTCAATTCTCAATTTAGACTGATTACAG  500

seq1  ATTTTTTTTAATTACACCTTAAGGAGATACATATTTACATTAAGATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATTACACCTTAAGGAGATACATATTTACATTAAGATCTCA  550

seq1  GGAATTATTTGGCGTCTTACATTATAATAAAATTACAGAAATATATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTTGGCGTCTTACATTATAATAAAATTACAGAAATATATATTC  600

seq1  AAATGGGATATTACTACTTATATAGCACATCAACTTAGTAACTGTACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGATATTACTACTTATATAGCACATCAACTTAGTAACTGTACTTG  650

seq1  GTGCTGTAAAAATAACTGAAGAAAGTACTTCAGAAAAGATTTTTGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTAAAAATAACTGAAGAAAGTACTTCAGAAAAGATTTTTGAGGAA  700

seq1  ATCTCTTAACTCGGAGACTCTATAAATAAAAAGATAAGTGAAACTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAACTCGGAGACTCTATAAATAAAAAGATAAGTGAAACTTGTCT  750

seq1  GGAACATAATGCCACAAAAAGAAGCATGCTAATTCGAGTCAGAAAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAATGCCACAAAAAGAAGCATGCTAATTCGAGTCAGAAAGAATG  800

seq1  GGTACATAGCAAGGTAAAATCAGGCCAAAACCAAACCAGTAAGTCAGCAG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTACATAGCAAGGTAAAATCAGGCCAAAACCAAA-CAGTAAGTCAGCAG  849

seq1  TGATTACTATGACTCCATTTGACTGTATGGT-AATAATAATTCCTCCTCT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGATTACTATGACTCCATTTGACTGTATGGTAAATAATAATTCCTCCTCT  899

seq1  GGGCTTTAGTACATTTAGACCGCTTTCCATCCATGGTACTTATTGAAGAA  949
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GGGCTTTAGTACATTTAGACCGCTTTCCATCATTGGTACTTATTGAAGAA  949

seq1  CACAG-TTTTTCTTGGGATAATTCCAATATATGACTTCAGGTTTTCTTAG  998
      ||||| ||||||||||||| |||||||||| |||| ||||||||||||||
seq2  CACAGTTTTTTCTTGGGAT-ATTCCAATATTTGAC-TCAGGTTTTCTTAG  997

seq1  CTTACGAACATCACAAAATCCTGGAACTTAAACACCCTAGGTTCTCCATC  1048
      |||||| ||||||||||   || ||||||||||| |||||| ||| ||||
seq2  CTTACG-ACATCACAAA--TCTTGAACTTAAACA-CCTAGG-TCT-CATC  1041

seq1  ATTCTCCATGACAACTTAGATTTCTCCCATCACAACTTCATCAATGGCCT  1098
      ||||| ||||||||||||||||| || ||||||||||||||| |||||||
seq2  ATTCT-CATGACAACTTAGATTT-TCTCATCACAACTTCATC-ATGGCCT  1088

seq1  CCCAGGCATTCCTCACATGAAAT  1121
      |||||||||| |||| |||||||
seq2  CCCAGGCATT-CTCA-ATGAAAT  1109