BAC Information

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BAC

Clone NameB6Ng01-136M02
Chromosome12 (Build37)2 (Build37)
Map Location 89,350,231 - 89,351,207143,554,510 - 143,555,051
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350
Downstream geneLOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M02.bB6Ng01-136M02.g
ACCDH936444DH936445
length1,1331,086
definitionDH936444|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M02, 5' end.DH936445|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,350,231 - 89,351,207)(143,554,510 - 143,555,051)
sequence
gaattctgacatagctaatccttccccggtgttccaacatcctagaaaat
ccttgaagccaacaaaacttagaattcagtaggaattcagtgagaaggtt
atctattcagtaacatttaaatttacttctagtagagactgtgaaactaa
ttagacattacaaagaagggagccaaaatagctctgagctggtctgaggg
gtgtttacttgagacaatagccagtcttacccagacaagggaattcacaa
tggcctagtgaataggtgggtttaccataaaagaattagggaatcaccct
gagacaggtttcttaactaggcccaaagaaacaacataaatcaggcattt
actaagaacccctggtggtgggcttaacaatagactagcattaaacctag
ctcccttcttagtggcagcggcctggtccccaccttcttttgatgtatac
attccttatgttttgcatcactataacttggtggatgtatctctcctcgt
ttcttgttattctgtataaaaagttttgatactcaacttgacaattacat
tcagattctacacaacctctcgtgtttattttctgtccattatttcacca
actccttgtccacctgcaaccagagacccattctacgcaggcagggacca
aaaagggtctgcagcacttccccttggatatacatggtgggatcttccaa
gcctgctgtgtttttacatgagatgaccaccaagaacagcagcagcagtg
gaggataggcagctggagcctagaagacaaggtgtatgctacatagggca
gagctggacaggtgacccaagcccttggaggagcctagaagatcctgagt
ggattgaagtcattgggtggttggagaataattttgttttgattgtgact
gtgccctggtatgtttccctcgtgaagaaggcatttagtggagctcacag
ttagagactctgaattttaaagtattggacattttcaagtgattgaactt
tttttttaacagcagcaagtttttattaatgtgagctgttaaaaatcact
ttctgtacgaacatggtgcacacgcctttattcagcatttgggagcagaa
gccagcagattctgagtcaaggccagcctggtc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagagtattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtcccctgtgccctttagtgagtgtagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttt
gaatagttcttcttgtttccacttgggttgatttcaccctgagttgataa
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgtgtcaagctgctagtatgtgcttctctcccgtttttt
cttgaaggcactcatagcttatggagtttcctctagaaatgctttcattg
gtgtcccaaagtttgggtacgatgtgctcatttcattaacctcaaaagtc
tttaatttctttcttattccttccttgaacaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89350231_89351207
seq2: B6Ng01-136M02.b_214_1180

seq1  AGGGAGCCAAAATAGCTCTGAGCTGGTCTGAGGGGTGTTTACTTGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCAAAATAGCTCTGAGCTGGTCTGAGGGGTGTTTACTTGAGACA  50

seq1  ATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAATAGG  100

seq1  TGGGTTTACCATAAAAGAATTAGGGAACCACCCTGAGACAGGTTTCTTAA  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGTTTACCATAAAAGAATTAGGGAATCACCCTGAGACAGGTTTCTTAA  150

seq1  CTAGGCCCAAAGAAACAACATAAATCAGGCATTTACTAAGAACCCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCAAAGAAACAACATAAATCAGGCATTTACTAAGAACCCCTGGT  200

seq1  GGTGGGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGC  250

seq1  AGCGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTATGTTTTGC  300

seq1  ATCACTATAACTTGGTGGATGTATCTCTCCTGGTTTCTTGTTATTCTGTA  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCACTATAACTTGGTGGATGTATCTCTCCTCGTTTCTTGTTATTCTGTA  350

seq1  TAAAAAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAAC  400

seq1  CTCTCGTGTTGATTTTCTGTCATTTATTTCACCAACTCCTTGTCCACCTG  450
      |||||||||| ||||||||||  |||||||||||||||||||||||||||
seq2  CTCTCGTGTTTATTTTCTGTCCATTATTTCACCAACTCCTTGTCCACCTG  450

seq1  CAACCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCA  500

seq1  CTTCCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTA  550

seq1  CATGAGATGACCACCAAGAACAGCAGCAGCAGTGAAGGATTGGCTGCTGG  600
      |||||||||||||||||||||||||||||||||| ||||| ||| |||||
seq2  CATGAGATGACCACCAAGAACAGCAGCAGCAGTGGAGGATAGGCAGCTGG  600

seq1  AGCCTAGAAGACAAGGTGTATGCTACATCGGGCAGAGCTGGACAGGTGAC  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCCTAGAAGACAAGGTGTATGCTACATAGGGCAGAGCTGGACAGGTGAC  650

seq1  CCAAGCCCTTGGAGGAGCCTAGAAGATCCTGAGTGGATTGAAGTCATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTTGGAGGAGCCTAGAAGATCCTGAGTGGATTGAAGTCATTGG  700

seq1  GTGGTTGGAGAATGATTTTGTTTTGATTGTGACTGTGCCCTGGCATGTTT  750
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GTGGTTGGAGAATAATTTTGTTTTGATTGTGACTGTGCCCTGGTATGTTT  750

seq1  CCCTCGTGAAGAAGGCATTTTAGTGGAGCCCACAGTTAAGAGACTCTGAA  800
      ||||||||||||||||| ||||||||||| ||||||| ||||||||||||
seq2  CCCTCGTGAAGAAGGCA-TTTAGTGGAGCTCACAGTT-AGAGACTCTGAA  798

seq1  TTTTAAAAGATATTGGACATTTTCAAGTGATTGAACTTTTTTTTTAACAG  850
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAA--GTATTGGACATTTTCAAGTGATTGAACTTTTTTTTTAACAG  846

seq1  CAGCAAAGTTTTTATTAATGTGAGCTGTTAAAAATCACCATCTGTACG-G  899
      |||| |||||||||||||||||||||||||||||||||  ||||||||  
seq2  CAGC-AAGTTTTTATTAATGTGAGCTGTTAAAAATCACTTTCTGTACGAA  895

seq1  CATGGTGGCACATGCCTTTAATCCCAGCATTGGGGAGGCAGAGGCAGGCA  949
      |||||| ||||| ||||||| |  ||||||| |||| ||||| ||  |||
seq2  CATGGT-GCACACGCCTTTATT--CAGCATTTGGGA-GCAGAAGCCAGCA  941

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTC  977
      || ||||||| |||||||||||||||||
seq2  GA-TTCTGAG-TCAAGGCCAGCCTGGTC  967

seq1: chr2_143554510_143555051
seq2: B6Ng01-136M02.g_616_1152 (reverse)

seq1  TACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGT  50
      ||||||| ||||||||||||| ||||||||||||||||||||||  ||| 
seq2  TACCTTGTTCAAGGAAGGAAT-AAGAAAGAAATTAAAGACTTTT--GAGG  47

seq1  TTAATGACAATGAAGCCACAACGTACCCAAACCTTTGGGACA-CAATGAA  99
      ||||||| |||||   |||| |||||||||| |||||||||| |||||||
seq2  TTAATGA-AATGA--GCACATCGTACCCAAA-CTTTGGGACACCAATGAA  93

seq1  AGCATTTCTAAGAGGGAAACT-CAT-AGCTATGAGTGCCTTCAAGAAAAA  147
      ||||||||| ||| ||||||| ||| ||||||||||||||||||||||||
seq2  AGCATTTCT-AGA-GGAAACTCCATAAGCTATGAGTGCCTTCAAGAAAAA  141

seq1  ACGGGAGAG-AGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTA  196
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  ACGGGAGAGAAGCACATACTAGCAGCTTGAC-ACACATCTAAAAGCTCTA  190

seq1  GAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATTAT  240

seq1  CAAACTCAGGGGTGAAATCAA-CCAAGTGGAAACAAGAAGAACTATTC-A  294
      | |||||| |||||||||||| |||||||||||||||||||||||||| |
seq2  C-AACTCA-GGGTGAAATCAACCCAAGTGGAAACAAGAAGAACTATTCAA  288

seq1  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  338

seq1  ATAAACCCTTAGCTAGACTCACTAAAGGGCACA-GGGACAAAATCCTAAT  393
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  ATAAACCCTTAGCTACACTCACTAAAGGGCACAGGGGACAAAATCCTAAT  388

seq1  TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  438

seq1  TCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  488

seq1  GAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA  542
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA  537