BAC Information

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BAC

Clone NameB6Ng01-137H04
Chromosome14 (Build37)12 (Build37)
Map Location 48,867,636 - 48,868,85580,324,092 - 80,324,356
singlet/doubletsingletsinglet
Overlap genePeli2
Upstream geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, EG624367
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137H04.bB6Ng01-137H04.g
ACCDH936963DH936964
length1,198325
definitionDH936963|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H04, 5' end.DH936964|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,867,636 - 48,868,855)(80,324,092 - 80,324,356)
sequence
gaattcctcactaaatacaccactaaggtcctcgcctgaaaacagactgg
ctgagaagctgtgtgtgggaggaacacatgggccctgacacggatgcaca
taaggccatgaaaatcaatttccaaggtgtttgtattcagatcgtgaatt
ctgcgcctggaagataagcaatgtaaaatacatgattttttttttaaaag
aaaatccaaatggataaagtaaaaagaagagatcttatgtcacctagctc
cgcatgcttcccaggagtgtccctaagttcctttgtaaatgtgttctgta
tgtgctcacgcatggactactacccccgtaaatccaccagacatctattt
tctcttgcttttacatggcctttcattcgctgttctaatgacatgtgcca
ggcataagtgaggttactggtttcactgaaactcatcaacttgagcagat
atgtactgcttagtggtatgcatttcaggcttagaaaacttacaacttgc
ttaataaaattttctattagcgataccataaaaccgtaccatctaattca
tccttctagggttgtgtaaccttccctctgctgctttgttttcaacactg
gtgaataacttagctctagtgacggacagagcggtgagtcttattgttgt
tgtccttaaacttgaaactacttactaacaaatttaaaaataagttttat
agttttatatatgcacagttcaaaataaaaacatacaaaagcacagaatg
aaagcgtggctccttttcttttaaaactacggtatttcgcatttgttatt
ttagaatttttgtgtacatctataatgtggtttgattatatcttctccct
attcatcactccagcccctcctgggttcctctccatatccctgcccccaa
tcccaacttcctgtcctattttttccttaagctggagtccagttactgat
gtccacatgtgcattgcgtaaggcatagtccacctaccggagtcacaacc
tcaaagaacacaaccctacttcccaggagctgcagcgttcactgctctca
gtgaggggggggggccgtgcccgtgagccctcccacaccacgcacgaatg
actgactagtttgaccttggtaagtcttgtggaggcagctctactttctt
ttcctctttacacttttaagtttattttcagaagtcaacaagtttcaa
tttgttaagctctgcaccccattttttaatggggttatttgatattttgg
agtccaccttcttgagttctttatatatattggatattagttccctatct
tatttaggataggtaaagatcctttcccaatctgttggtggccttgttgt
cttaatgacggtgtcttttgccttacagaagctttacaattttatgaggt
cccatttgtagattcttgatctgacagcacaagccattgctgttctattc
agaaatttttcccctgtgcccatgtcttcgagccttttccccactttctc
ctctataagtttcagtgtctctggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48867636_48868855
seq2: B6Ng01-137H04.b_46_1243 (reverse)

seq1  TTGAAACATTTGTTGACCTTTCTTTTAAAAAATAAAACTTAAAGAAAGGT  50
      |||||||  ||||||||  ||||     ||||| ||||||||  ||  ||
seq2  TTGAAAC--TTGTTGAC--TTCT----GAAAAT-AAACTTAA--AAGTGT  39

seq1  GAAGAAGAAAAGAAAGGTAGAGCTTGCCTCCACAAGACCTACACAAGGTC  100
       |||| ||||||||| ||||||| |||||||||||||| ||| |||||||
seq2  AAAGAGGAAAAGAAA-GTAGAGC-TGCCTCCACAAGACTTAC-CAAGGTC  86

seq1  AAACTAGTCAGTCATTCGTGCGTGGGTGTGGGAGTGGCTCACGGGGCACG  150
      ||||||||||||||||||||||| |||||||||| ||||||| |||||||
seq2  AAACTAGTCAGTCATTCGTGCGT-GGTGTGGGAG-GGCTCAC-GGGCACG  133

seq1  --CCCCCCCCCTCACTGAGGAGCAGTTGACGGCTGCAGCTCCTGGGGAAG  198
        |||||||||||||||| |||||| |||  |||||||||||||||  | 
seq2  GCCCCCCCCCCTCACTGA-GAGCAG-TGAACGCTGCAGCTCCTGGG--AA  179

seq1  GTAGGGTTGGTGTTCTTTGAGGTTGGTGACTCCGGTAGGTGGACTATGCC  248
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGGGTT-GTGTTCTTTGAGGTT-GTGACTCCGGTAGGTGGACTATGCC  227

seq1  TTACGCCAATGCACATGTGGACATCAGTAACTGGACTCCAGCTTAAGGAA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACG-CAATGCACATGTGGACATCAGTAACTGGACTCCAGCTTAAGGAA  276

seq1  AAAATAGGACAGGAAGTTGGGATTGGGGGCAGGGATATGGAGAGGAACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGACAGGAAGTTGGGATTGGGGGCAGGGATATGGAGAGGAACCC  326

seq1  AGGAGGGGCTGGAGTGATGAATAGGGAGAAGATATAATCAAACCACATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCTGGAGTGATGAATAGGGAGAAGATATAATCAAACCACATTA  376

seq1  TAGATGTACACAAAAATTCTAAAATAACAAATGCGAAATACCGTAGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTACACAAAAATTCTAAAATAACAAATGCGAAATACCGTAGTTTT  426

seq1  AAAAGAAAAGGAGCCACGCTTTCATTCTGTGCTTTTGTATGTTTTTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGGAGCCACGCTTTCATTCTGTGCTTTTGTATGTTTTTATTT  476

seq1  TGAACTGTGCATATATAAAACTATAAAACTTATTTTTAAATTTGTTAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTGCATATATAAAACTATAAAACTTATTTTTAAATTTGTTAGTA  526

seq1  AGTAGTTTCAAGTTTAAGGACAACAACAATAAGACTCACCGCTCTGTCCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTCAAGTTTAAGGACAACAACAATAAGACTCACCGCTCTGTCCG  576

seq1  TCACTAGAGCTAAGTTATTCACCAGTGTTGAAAACAAAGCAGCAGAGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGAGCTAAGTTATTCACCAGTGTTGAAAACAAAGCAGCAGAGGGA  626

seq1  AGGTTACACAACCCTAGAAGGATGAATTAGATGGTACGGTTTTATGGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACACAACCCTAGAAGGATGAATTAGATGGTACGGTTTTATGGTAT  676

seq1  CGCTAATAGAAAATTTTATTAAGCAAGTTGTAAGTTTTCTAAGCCTGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAATAGAAAATTTTATTAAGCAAGTTGTAAGTTTTCTAAGCCTGAAA  726

seq1  TGCATACCACTAAGCAGTACATATCTGCTCAAGTTGATGAGTTTCAGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCACTAAGCAGTACATATCTGCTCAAGTTGATGAGTTTCAGTGA  776

seq1  AACCAGTAACCTCACTTATGCCTGGCACATGTCATTAGAACAGCGAATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTAACCTCACTTATGCCTGGCACATGTCATTAGAACAGCGAATGA  826

seq1  AAGGCCATGTAAAAGCAAGAGAAAATAGATGTCTGGTGGATTTACGGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGTAAAAGCAAGAGAAAATAGATGTCTGGTGGATTTACGGGGG  876

seq1  TAGTAGTCCATGCGTGAGCACATACAGAACACATTTACAAAGGAACTTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTCCATGCGTGAGCACATACAGAACACATTTACAAAGGAACTTAG  926

seq1  GGACACTCCTGGGAAGCATGCGGAGCTAGGTGACATAAGATCTCTTCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCCTGGGAAGCATGCGGAGCTAGGTGACATAAGATCTCTTCTTT  976

seq1  TTACTTTATCCATTTGGATTTTCTTTTAAAAAAAAAATCATGTATTTTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATCCATTTGGATTTTCTTTTAAAAAAAAAATCATGTATTTTAC  1026

seq1  ATTGCTTATCTTCCAGGCGCAGAATTCACGATCTGAATACAAACACCTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATCTTCCAGGCGCAGAATTCACGATCTGAATACAAACACCTTG  1076

seq1  GAAATTGATTTTCATGGCCTTATGTGCATCCGTGTCAGGGCCCATGTGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATTTTCATGGCCTTATGTGCATCCGTGTCAGGGCCCATGTGTT  1126

seq1  CCTCCCACACACAGCTTCTCAGCCAGTCTGTTTTCAGGCGAGGACCTTAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACACACAGCTTCTCAGCCAGTCTGTTTTCAGGCGAGGACCTTAG  1176

seq1  TGGTGTATTTAGTGAGGAATTC  1220
      ||||||||||||||||||||||
seq2  TGGTGTATTTAGTGAGGAATTC  1198

seq1: chr12_80324092_80324356
seq2: B6Ng01-137H04.g_133_397 (reverse)

seq1  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  50
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGGCTCGAAG  50

seq1  ATATGGGCACAGGGGAAATTTTCCTGACCAGAACAACAATGGCTTGTGCT  100
      | ||||||||||||||||  || ||||  |||||| ||||||||||||||
seq2  ACATGGGCACAGGGGAAAAATTTCTGAATAGAACAGCAATGGCTTGTGCT  100

seq1  GTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTG  150
      || |||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GTCAGATCAAGAATCTACAAATGGGACCTCATAAAATTGTAAAGCTTCTG  150

seq1  TAAGACAAAAGACACTGTCAATAAGACAAAAAGGCCACCCACAGATTGGG  200
      |||| |||||||||| |||| |||||||| ||||||||| ||||||||||
seq2  TAAGGCAAAAGACACCGTCATTAAGACAACAAGGCCACCAACAGATTGGG  200

seq1  AAAGGATTTTTACCAATCCTAAATCTGATAGGGGACTAATATCTAATATA  250
      ||||||| |||||| |||||||||  ||||||| ||||||||| ||||||
seq2  AAAGGATCTTTACCTATCCTAAATAAGATAGGGAACTAATATCCAATATA  250

seq1  TACAAAGAACTCAAG  265
      || ||||||||||||
seq2  TATAAAGAACTCAAG  265