BAC Information

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BAC

Clone NameB6Ng01-138E11
Chromosome12 (Build37)
Map Location 105,748,151 - 105,913,314
singlet/doubletdoublet
Overlap genenone
Upstream gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138E11.bB6Ng01-138E11.g
ACCDH937583DH937584
length1,055289
definitionDH937583|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E11, 5' end.DH937584|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,912,252 - 105,913,314)(105,748,151 - 105,748,439)
sequence
gaattccttccacaaaccccttaccctggcctggatcaggtttccaaccc
ctggggaggaggagtaggtgctaaaaagaggccaagctggattcatcaga
aaccaatcagtttttgtgcacaaatgtgctcttggtgcaacctgctaacc
tggtgtttagcagtgtgagaggcctcgggtggcgtgcagagcaggactct
gggaaagtgcttaagcccagggtaccaattagtaccccatttggcctcca
gagccaggtagagctgtggggaaccaagataggactcaaattattgctgt
catctcgccttgggtagtatctacgaactcagttctccacccagttgcta
tagcttcagaagccaggtccagacccctgcatctacttggttttacttgt
gcaagggtcatgtggttgcctcttatgggaactcagtaaactacaaacca
ctgtaagctacaaacttacaaacttaccaataatacgcaacttacccata
tgtgcctgtgaccaagaatgtcctccctttctgtccctctctgtctctct
gtatgtgtgcgtatgtatgttgcatgtatgcacatgtgggtgtgcacatg
tgtgcttgtgcatgcggaggtcagaaaacaatcctcagcagcaagtccca
tgtgccttctgtttttggattgtggcagagcttcttgtaggcctggaact
ttggcaagcagattaaactgctcagggaactcaggaagatctgtctgtct
ctgctgtgagtcctgccatctctgggattacaagcgaacaccactgctcc
tggcttctcatccacagtctggggattgaactcaggtcattaggtttgtg
aggcatgcgcttactgacagacccatggccacttcctaagaaacatgctt
ttcaagtagccatgagagccaggtccaggacgggcccctgggatccattg
ttctaccctctctagcctgtgcctctgcgggttctctcggccttggggac
agagcttcatcttccacacagtctccctctctgcctggccttggaagtga
tctat
ttggggaagccgagctgactcttaggaggctgaagatgagaaaggtccca
gattaaccagagggagcatgttggtggcatgttcctggcctacagtagat
gccaccttcctgtcagcaaacatactcacaaacagggatacactaacaag
aaatggtcattcttcttatttggacttttctccccacagccctcgtgatc
ctaaggaaggcagaactgctcaagaggatgctgggactctaggtagatcc
agagggaggtcaaatagctcactttggaggggggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105912252_105913314
seq2: B6Ng01-138E11.b_49_1103 (reverse)

seq1  ATAGAATCACTTCCAGGGCCAGGCAGAGAGGGAGACTGTGTGGGAGATGG  50
      |||| |||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  ATAG-ATCACTTCCAAGGCCAGGCAGAGAGGGAGACTGTGTGGAAGATGA  49

seq1  AGCTCTGGTCCCCAAGGCCGAGAGAACCCCGCAGAGGGCACAGGCTAGAG  100
      |||||| ||||||||||||||||||| |||||||| ||||||||||||||
seq2  AGCTCT-GTCCCCAAGGCCGAGAGAA-CCCGCAGA-GGCACAGGCTAGAG  96

seq1  AGGGTAGAACACTGGATCCCAGGGGCCCGTCCTGGACCTGGCTCTCATTG  150
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AGGGTAGAACAATGGATCCCAGGGGCCCGTCCTGGACCTGGCTCTCA-TG  145

seq1  GCTACTTTGAAAAGCATGTTTCTTAGGAAGTGGGCCATGGGTCTGTCAGT  200
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTAC-TTGAAAAGCATGTTTCTTAGGAAGT-GGCCATGGGTCTGTCAGT  193

seq1  AAAGCGCATGCCTCACAAACCTAATGACCTGAGTTCAATCCCCAGACTGT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGCGCATGCCTCACAAACCTAATGACCTGAGTTCAATCCCCAGACTGT  242

seq1  GGATGAGAAGCCAGGAGCAGTGGTGTTCGCTTGTAATCCCAGAGATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAAGCCAGGAGCAGTGGTGTTCGCTTGTAATCCCAGAGATGGCA  292

seq1  GGACTCACAGCAGAGACAGACAGATCTTCCTGAGTTCCCTGAGCAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACAGCAGAGACAGACAGATCTTCCTGAGTTCCCTGAGCAGTTTA  342

seq1  ATCTGCTTGCCAAAGTTCCAGGCCTACAAGAAGCTCTGCCACAATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTGCCAAAGTTCCAGGCCTACAAGAAGCTCTGCCACAATCCAAA  392

seq1  AACAGAAGGCACATGGGACTTGCTGCTGAGGATTGTTTTCTGACCTCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGCACATGGGACTTGCTGCTGAGGATTGTTTTCTGACCTCCGC  442

seq1  ATGCACAAGCACACATGTGCACACCCACATGTGCATACATGCAACATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAGCACACATGTGCACACCCACATGTGCATACATGCAACATACA  492

seq1  TACGCACACATACAGAGAGACAGAGAGGGACAGAAAGGGAGGACATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACACATACAGAGAGACAGAGAGGGACAGAAAGGGAGGACATTCTT  542

seq1  GGTCACAGGCACATATGGGTAAGTTGCGTATTATTGGTAAGTTTGTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGGCACATATGGGTAAGTTGCGTATTATTGGTAAGTTTGTAAGT  592

seq1  TTGTAGCTTACAGTGGTTTGTAGTTTACTGAGTTCCCATAAGAGGCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTTACAGTGGTTTGTAGTTTACTGAGTTCCCATAAGAGGCAACC  642

seq1  ACATGACCCTTGCACAAGTAAAACCAAGTAGATGCAGGGGTCTGGACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCCTTGCACAAGTAAAACCAAGTAGATGCAGGGGTCTGGACCTG  692

seq1  GCTTCTGAAGCTATAGCAACTGGGTGGAGAACTGAGTTCGTAGATACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGCTATAGCAACTGGGTGGAGAACTGAGTTCGTAGATACTAC  742

seq1  CCAAGGCGAGATGACAGCAATAATTTGAGTCCTATCTTGGTTCCCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCGAGATGACAGCAATAATTTGAGTCCTATCTTGGTTCCCCACAG  792

seq1  CTCTACCTGGCTCTGGAGGCCAAATGGGGTACTAATTGGTACCCTGGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTGGCTCTGGAGGCCAAATGGGGTACTAATTGGTACCCTGGGCT  842

seq1  TAAGCACTTTCCCAGAGTCCTGCTCTGCACGCCACCCGAGGCCTCTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTTTCCCAGAGTCCTGCTCTGCACGCCACCCGAGGCCTCTCACA  892

seq1  CTGCTAAACACCAGGTTAGCAGGTTGCACCAAGAGCACATTTGTGCACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAACACCAGGTTAGCAGGTTGCACCAAGAGCACATTTGTGCACAA  942

seq1  AAACTGATTGGTTTCTGATGAATCCAGCTTGGCCTCTTTTTAGCACCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATTGGTTTCTGATGAATCCAGCTTGGCCTCTTTTTAGCACCTAC  992

seq1  TCCTCCTCCCCAGGGGTTGGAAACCTGATCCAGGCCAGGGTAAGGGGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCCCAGGGGTTGGAAACCTGATCCAGGCCAGGGTAAGGGGTTT  1042

seq1  GTGGAAGGAATTC  1063
      |||||||||||||
seq2  GTGGAAGGAATTC  1055

seq1: chr12_105748151_105748439
seq2: B6Ng01-138E11.g_73_361

seq1  TTGGGGAAGCCGAGCTGACTCTTAGGAGGCTGAAGATGAGAAAGGTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGCCGAGCTGACTCTTAGGAGGCTGAAGATGAGAAAGGTCCCA  50

seq1  GATTAACCAGAGGGAGCATGTTGGTGGCATGTTCCTGGCCTACAGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACCAGAGGGAGCATGTTGGTGGCATGTTCCTGGCCTACAGTAGAT  100

seq1  GCCACCTTCCTGTCAGCAAACATACTCACAAACAGGGATACACTAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTTCCTGTCAGCAAACATACTCACAAACAGGGATACACTAACAAG  150

seq1  AAATGGTCATTCTTCTTATTTGGACTTTTCTCCCCACAGCCCTCGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCATTCTTCTTATTTGGACTTTTCTCCCCACAGCCCTCGTGATC  200

seq1  CTAAGGAAGGCAGAACTGCTCAAGAGGATGCTGGGACTCTAGGTAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGGCAGAACTGCTCAAGAGGATGCTGGGACTCTAGGTAGATCC  250

seq1  AGAGGGAGGTCAAATAGCTCACTTTGGAGGGGGGAGAGG  289
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGTCAAATAGCTCACTTTGGAGGGGGGAGAGG  289