BAC Information

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BAC

Clone NameB6Ng01-141B03
Chromosome12 (Build37)
Map Location 10,280,936 - 10,395,480
singlet/doubletdoublet
Overlap geneNt5c1b
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneRdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B03.bB6Ng01-141B03.g
ACCDH939630DH939631
length1,200975
definitionDH939630|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B03, 5' end.DH939631|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,280,936 - 10,281,937)(10,394,951 - 10,395,480)
sequence
gaattcaagaattatgagccagccatcaggcttagtaaagttaccccgtg
gtaggaggatgataacctgcctgggatcctttgcaatgcagtgcaaaacc
tgaaaatgcagccccaaatggttatgtgcccctggtcatattccttcctg
gggaaaaaccattgtaagaaactctgctctgaggagaactggaacaaaac
ccaggctatttcagaaagtgtttttttctttctggatgctgaagtatcta
tagttattctttttattaccattatcatcatcatcatcatcatcatcttt
atctttttattaattattatatttatttacatcctaaatattggccccct
ccaggtctgtcctcccagagttcttcccccatgcctccttccctttccta
cttttgagtctttcagctaagattgctcatgttgggtcctgggaggctcc
tccatcccaggtctctgggactttctagaggttcccagaaacctcatcct
ctgcagttgcatatttgtactcattctcctggccctccgagcttttctac
tgtctcctcccccaatacctgatcctgccccccgcttttccctttccccc
cttactctcccacctaggtccctccctctcgtgattattttgtaccccct
tctaaatgggattgaaacatcctcacttgggccttccttcttgtttaact
tcttacagtctgcagttattattgagaactataagcaaagacatgtggta
ggggcaagaggtaactgtttccacattaaatcataagccctgatacttgt
gaccctgaaacttgtgacccaaaagatatggatcaagggagtagaaagaa
ataagtttttagaatcaactgtggaatgggtactggtgtttcagacaaca
gaagctgttaaaacaaaacaggcagagttttagaaataccagatgggagg
ttatcagagatgttagcattactactttacctactataaaaccactgcaa
tttctaggtgcacaatcatgctggaaaatatttctctactttctatgggt
tctatacatactctttcctaaatccagatccctaatgcttctatctctct
ctagatttcttctatacagaatcttctttcaacttgggacattcttgtca
ggcctcctttattttcacagtttcctgaagaccttacataaattcctacc

gaattcaaaatatgcaaaactgatcaaaactgccaggtatgttagaactc
atttgtaatcccaccatatgagaaactgagtcaggtggcagtgagcttgt
cttaataagggttttattgctatgaacagacaccatgaataaggtaactc
tttttatttatttatttttggtttttcaagacagggtttccctggctgtc
ctggaactcactctgtagaccaggctgggctcgaactcagaaatctacct
gcctctgcctcccaagtgctgggattaaggtgagtgccatcactgcccgg
ctgaggtaactcttataaggatatttaattggagatgccttacaggttcc
gcggttcagtccattatcatcagggtgggaacatggcagcatccaggcag
tcatggtgcaggaggagcttaaagttctacatcttcatctgaaggctgct
aggagaatactaacttccaggcagctaggatgagggtcttatagcccaca
cccacagtgacacacccactccaacaaggccacacctactaataatgccc
ttctctgggccaagcatatgcaagctatcacagagctcaaggaaagccct
agttactgctggatgtttgtcatcatgacacaagttgacacagattatct
aagagtagggagcttccaataaggaaatgtccccataagatccaactgca
aacattttcttaattagtgattgatgactgagggcccagtccattatggt
tagtgccaataccctgggcaccaggctgagcaagacgagggaagcaagct
agtaagctgcatctatttggcctctatcagctcttgccctccaggacttt
accctgttttagttctcattcctaactttctttgaagatgaccagtaata
tggatgtataagggtgaataaacccatccacccccaacttgttgtttggt
catggtctttcttcgaagcaagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10280936_10281937
seq2: B6Ng01-141B03.b_269_1246

seq1  TTTTTCTTTCTGGATGCTGAAGTATCTATAGTTATTCTTTTTATTACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTGGATGCTGAAGTATCTATAGTTATTCTTTTTATTACCAT  50

seq1  TATCATCATCATCATCATCATCATCTTTATCTTTTTATTAATTATTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATCATCATCATCATCATCTTTATCTTTTTATTAATTATTATAT  100

seq1  TTATTTACATCCTAAATATTGGCCCCCTCCAGGTCTGTCCTCCCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATCCTAAATATTGGCCCCCTCCAGGTCTGTCCTCCCAGAGTT  150

seq1  CTTCCCCCATGCCTCCTTCCCTTTCCTACTTTTGAGTCTTTCAGCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCATGCCTCCTTCCCTTTCCTACTTTTGAGTCTTTCAGCTAAGA  200

seq1  TTGCTCATGTTGGGTCCTGGGAGGCTCCTCCATCCCAGGTCTCTGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATGTTGGGTCCTGGGAGGCTCCTCCATCCCAGGTCTCTGGGACT  250

seq1  TTCTAGAGGTTCCCAGAAACCTCATCCTCTGCAGTTGCATATTTGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGGTTCCCAGAAACCTCATCCTCTGCAGTTGCATATTTGTACTC  300

seq1  ATTCTCCTGGCCCTCCGAGCTTTTCTACTGTCTCCTCCCCCAATACCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGGCCCTCCGAGCTTTTCTACTGTCTCCTCCCCCAATACCTGA  350

seq1  TCCTGCCCCCCGCTTTTCCCTTTCCCCCCTTACTCTCCCACCTAGGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCCCGCTTTTCCCTTTCCCCCCTTACTCTCCCACCTAGGTCCC  400

seq1  TCCCTCTCGTGATTATTTTGTACCCCCTTCTAAATGGGATTGAAACATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCGTGATTATTTTGTACCCCCTTCTAAATGGGATTGAAACATCC  450

seq1  TCACTTGGGCCTTCCTTCTTGTTTAACTTCTTACAGTCTGCAGTTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGGCCTTCCTTCTTGTTTAACTTCTTACAGTCTGCAGTTATTAT  500

seq1  TGAGAACTATAAGCAAAGACATGTGGTAGGGGCAAGAGGTAACTGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTATAAGCAAAGACATGTGGTAGGGGCAAGAGGTAACTGTTTCC  550

seq1  ACATTAAATCATAAGCCCTGATACTTGTGACCCTGAAACTTGTGACCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATCATAAGCCCTGATACTTGTGACCCTGAAACTTGTGACCCAA  600

seq1  AAGAATATGGATCAAGGGAGTAGAAAGAAATAAGTTTTTAGAATCAACTG  650
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-ATATGGATCAAGGGAGTAGAAAGAAATAAGTTTTTAGAATCAACTG  649

seq1  TGGAATGGGTACT-GTGTTTCAGACAACAG-AGCTGTTAAAACAAAACAG  698
      ||||||||||||| |||||||||||||||| |||||||||||||||||| 
seq2  TGGAATGGGTACTGGTGTTTCAGACAACAGAAGCTGTTAAAACAAAACA-  698

seq1  GGCAGAGTTTTAG-AATACCAGATGGGAGGTTATCAGAGAATGTTAGCAT  747
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GGCAGAGTTTTAGAAATACCAGATGGGAGGTTATCAGAG-ATGTTAGCAT  747

seq1  TACTACTTTACCTACCTATAAAAACCCACTGCAATTTCTA-GTGCACCAA  796
      |||||||||||||| ||||||||  ||||||||||||||| ||||| |||
seq2  TACTACTTTACCTA-CTATAAAA--CCACTGCAATTTCTAGGTGCA-CAA  793

seq1  TCATGCTGGAAAATATTTCTCTACTTTTCTATGGGTTCCTAATAACCATA  846
      |||||||||||||||||||||||| |||||||||||||    ||  ||||
seq2  TCATGCTGGAAAATATTTCTCTAC-TTTCTATGGGTTC----TATACATA  838

seq1  CTCTTTCCTTATAATCACAGATCCCTAATGCTTTCTAATCTCTCTCTTAG  896
      |||||||||   |||| |||||||||||||| |||| ||||||||| |||
seq2  CTCTTTCCT--AAATC-CAGATCCCTAATGC-TTCT-ATCTCTCTC-TAG  882

seq1  ATTTTCTTCTATACAGTATCTTCTTTCACAATCTCTGGTACTTTCTTGTC  946
      | |||||||||||||| ||||||||||   | || ||| || ||||||||
seq2  A-TTTCTTCTATACAGAATCTTCTTTC---AACT-TGGGACATTCTTGTC  927

seq1  AGGCCTCCATTATCTTCAACAGTTCCACTAAGACACCTTACATAATAATT  996
      |||||||| |||| ||| |||||| |   |||  ||||||||||  ||||
seq2  AGGCCTCCTTTATTTTC-ACAGTTTCCTGAAG--ACCTTACATA--AATT  972

seq1  CCTACC  1002
      ||||||
seq2  CCTACC  978

seq1: chr12_10394951_10395480
seq2: B6Ng01-141B03.g_68_597 (reverse)

seq1  GCCTTGTTGGAGTGGGTGTGTCACTGTGGGTGTGGGCTATAAGACCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGAGTGGGTGTGTCACTGTGGGTGTGGGCTATAAGACCCTCA  50

seq1  TCCTAGCTGCCTGGAAGTTAGTATTCTCCTAGCAGCCTTCAGATGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGCCTGGAAGTTAGTATTCTCCTAGCAGCCTTCAGATGAAGAT  100

seq1  GTAGAACTTTAAGCTCCTCCTGCACCATGACTGCCTGGATGCTGCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTTTAAGCTCCTCCTGCACCATGACTGCCTGGATGCTGCCATGT  150

seq1  TCCCACCCTGATGATAATGGACTGAACCGCGGAACCTGTAAGGCATCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCTGATGATAATGGACTGAACCGCGGAACCTGTAAGGCATCTCC  200

seq1  AATTAAATATCCTTATAAGAGTTACCTCAGCCGGGCAGTGATGGCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATCCTTATAAGAGTTACCTCAGCCGGGCAGTGATGGCACTCA  250

seq1  CCTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCGA  300

seq1  GCCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGAAACCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGAAACCCTGT  350

seq1  CTTGAAAAACCAAAAATAAATAAATAAAAAGAGTTACCTTATTCATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAACCAAAAATAAATAAATAAAAAGAGTTACCTTATTCATGGTG  400

seq1  TCTGTTCATAGCAATAAAACCCTTATTAAGACAAGCTCACTGCCACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCATAGCAATAAAACCCTTATTAAGACAAGCTCACTGCCACCTGA  450

seq1  CTCAGTTTCTCATATGGTGGGATTACAAATGAGTTCTAACATACCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCTCATATGGTGGGATTACAAATGAGTTCTAACATACCTGGCA  500

seq1  GTTTTGATCAGTTTTGCATATTTTGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  GTTTTGATCAGTTTTGCATATTTTGAATTC  530