BAC Information

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BAC

Clone NameB6Ng01-142E02
ChromosomeY (Build37)12 (Build37)
Map Location 573,325 - 573,46661,426,964 - 61,427,591
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E02.bB6Ng01-142E02.g
ACCDH940496DH940497
length494628
definitionDH940496|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E02, 5' end.DH940497|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,325 - 573,466)(61,426,964 - 61,427,591)
sequence
tttgtttacctctgtaccccatacaacttccaaaacacaagaaaatcaag
aaggaagactaacatgtggaaacttcattctgccctagaataggcaatta
aatacccatggaaggagttgcagagacaaagtttggagctaaaacaaaag
gctgaaccacccagagactgccccacccaagggtccatcccttaatcagc
caccaaatgcagaaactattgcatacaccagcaagattttgctgaaagga
ccctgatatagctatctcatgtgagcctttcccagtacctggcaaataca
gaagtggatgctcacagtcatctataggagggaacacagagcccccagtg
taggagctagagaaagtacccaaggagctgaaagggtctgcaaccctata
agtggaacaacaatatgaactaattagtacccccagagctcgtgtctcta
gctgcatatgtagcagaagatggcctactcggccatcattggga
gaattcctgactttatgggagagaagaatgtgaactaaattgtttttttt
tttttctcatttagaagatagttggctggagtatgttggagtataatatt
tggagagggcacatcaagaactcctgtgtgacaagtctgtctactctctc
cctatctgttcaatattgtacttgaagttctatccagagcgataagataa
ctaagggaaataaggggaatacaaattggcaaagatgaattcaaggtatc
actatttgtagatgatatgatcatatacataagcaaccccaaaatttcta
ccagagaactacacctgataaacaccttcagcaaagtgacaggatacaaa
attaactcaaagaaatcactagctctcctttgtacaaatgataaacaggc
ccagaaaaaaattaggggaacaactccctttacaatagccatgagtagca
taaaatatcttggggtagctctaaccctgccagtgtaagacctatatgaa
aagaacttcaagtccatgaagaaagaaactgaagaaaatatcagaagatt
gaaatatctcccatgctcctgaaagtataggattaacatagtgaaaatgt
ccatctaaccaaaattagtctacagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573325_573466
seq2: B6Ng01-142E02.b_402_544

seq1  AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCTATAG  50
      |||||||||||||||||||||||||||| || || ||||||| |||||| 
seq2  AGGAGCTAGAGAAAGTACCCAAGGAGCTGAAAGGGTCTGCAACCCTATAA  50

seq1  ATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCTCTAG  99
       ||||||||||||||||| |||  |||| || |||||||| |||||||||
seq2  GTGGAACAACAATATGAACTAATTAGTACCCCCAGAGCTCGTGTCTCTAG  100

seq1  CTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGA  142
      ||||||||||| |||||||||||||| | ||||||||||||||
seq2  CTGCATATGTAGCAGAAGATGGCCTACTCGGCCATCATTGGGA  143

seq1: chr12_61426964_61427591
seq2: B6Ng01-142E02.g_69_696

seq1  GAATTCCTGACCTTATGGGAGAGAAGAATGTGAACTAAATTGTTTTTTTT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTTTATGGGAGAGAAGAATGTGAACTAAATTGTTTTTTTT  50

seq1  TTTTTCTCATTTAGAAGATAGTTGGCTGGAGTATGTTGGAGTATAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCATTTAGAAGATAGTTGGCTGGAGTATGTTGGAGTATAATATT  100

seq1  TGGAGAGGGCACATCAAGAACTCCTGTGTGACAAGTCTGTCTACTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGGCACATCAAGAACTCCTGTGTGACAAGTCTGTCTACTCTCTC  150

seq1  CCTATCTGTTCAATATTGTACTTGAAGTTCTATCCAGAGCGATAAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGTTCAATATTGTACTTGAAGTTCTATCCAGAGCGATAAGATAA  200

seq1  CTAAGGGAAATAAGGGGAATACAAATTGGCAAAGATGAATTCAAGGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAAATAAGGGGAATACAAATTGGCAAAGATGAATTCAAGGTATC  250

seq1  ACTATTTGTAGATGATATGATCATATACATAAGCAACCCCAAAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTAGATGATATGATCATATACATAAGCAACCCCAAAATTTCTA  300

seq1  CCAGAGAACTACACCTGATAAACACCTTCAGCAAAGTGACAGGATACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACTACACCTGATAAACACCTTCAGCAAAGTGACAGGATACAAA  350

seq1  ATTAACTCAAAGAAATCACTAGCTCTCCTTTGTACAAATGATAAACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAAAGAAATCACTAGCTCTCCTTTGTACAAATGATAAACAGGC  400

seq1  CCAGAAAAAAATTAGGGGAACAACTCCCTTTACAATAGCCATGAGTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAAATTAGGGGAACAACTCCCTTTACAATAGCCATGAGTAGCA  450

seq1  TAAAATATCTTGGGGTAGCTCTAACCCTGCCAGTGAAAGACCTATATGAA  500
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAATATCTTGGGGTAGCTCTAACCCTGCCAGTGTAAGACCTATATGAA  500

seq1  AAGAACTTCAAGTCCATGAAGAAAGAAACTGAAGAAAATATCAGAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCAAGTCCATGAAGAAAGAAACTGAAGAAAATATCAGAAGATT  550

seq1  GAAATATCTCCCATGCTCCTGAAAGTATAGGATTAACATAGTGAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTCCCATGCTCCTGAAAGTATAGGATTAACATAGTGAAAATGT  600

seq1  CCATCTAACCAAAATTAGTCTACAGATT  628
      ||||||||||||||||||||||||||||
seq2  CCATCTAACCAAAATTAGTCTACAGATT  628