BAC Information

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BAC

Clone NameB6Ng01-143I24
Chromosome12 (Build37)
Map Location 16,545,518 - 16,719,711
singlet/doubletdoublet
Overlap geneLpin1, Ntsr2, Greb1
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I24.bB6Ng01-143I24.g
ACCDH941467DH941468
length1,0341,077
definitionDH941467|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I24, 5' end.DH941468|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,545,518 - 16,546,565)(16,718,645 - 16,719,711)
sequence
gaattccctggaagtgagcaggggagacagggtatgccaagcctggcatc
gtgaagaacagacagcctgcgcagaggtacaagggacggacagcacagtc
aggggcatctgcctgccacagaggccatgtgcaggccacgggggaggaac
cgaagacaagtcacagctctgaaggagcaggacaactacagtcacagtga
acaggtacagggtcttgttcttatcacagtgcagatctgacatcaatcct
gccttgttccagctgtgtgatctcaggcagagagaggcccagatgtctcc
ataccctgacttcctccaccgtgaaggaaggaaaatgaaccgtgccactt
gcttagcatcagaaacagaataacatacccagtgattcagctgtaggtac
tgaagacccatcactccacagtggatcacttccacttcaggaaagaatcc
tggtcagcaagcctgaggcctcctctagccttacttgctgtgtgactctg
ggaaagtatcttgccctccctgagcttcaacccctccatccgcacggtgt
gtggggctggaccacgcaggggtttccagcactccctactcagggcatct
cccctgcctcccggaggatgttgcctggccatagcctgcactgcagaagg
aaagcagctacatccatcagcctgggagacctccaggctcctccacagtg
attcacacacacccagccctctcctgcacacccagacttcaatctgacgg
tctctgggcccctcttcactcatgccgagaaccaaaggggggctttcgaa
atccaaacttcaggaattagcatgttctgtggcatgaaatgacttattca
ctaaggctgtgtgtgtttaataaagtcttcgagagactcgtgagaaaagt
gtgtctgtacaaggcagggaagcctcccttaatacacacaaggattatgt
ctttctagagataaacaacaaatttttaaaatacctctgactaaagtttg
tggctaggaggggcagctccccaaggagctgtcc
gaattcaatcataggctttctattgctgcgataaaacaccatgaccaaaa
gcaatgtggggtggaaagagtgtatttcagccagcagtttcatatcacag
tccatcactgaggaaggccaggacaggaactcaaacagggcaggaactga
tgcagaggccacggaagagttctgcttacagtcttgcttgacttgctttc
ttataccatccaggaccacctgcttagagggagtactatccacagtaggc
taggccttcccacatcaatcatcaaccgagaaaattgcaccataggcaga
cttgcccagcagccagggcagtctggtgggcatattttctcaattgaggt
tccttcttcctaaattactctagcttgtgttaagttgacataaaactatc
tagcatgcctgcctaggaagaaacatggtgaacttcagacacatacttca
gaagtacctacagaggaattgcttgaagaaacacagagatcttcagtagc
tacaaggatgaccaagtagcccctacacacgagaggcatttacacccacc
agcagtactaggcaaggagaccataacatatggaaacctgtttgtagggt
ggtggttaaaaatcaagttgagtacccacgatccttacagtaggtggaga
gaaagataacgtttttttctttatgaactttcaggatggtgggtttgtgg
ctggcttcattttatattctctattctccaagccttggtacttgacatca
cgatttcaggctgtgtgatttataagtgcgcctgcataattctgggatgt
gtgcagcagcattggtggcaagctgcctggtgcacctgcccagcagtgct
gacatcattttctggtgccaccaccaatgtcttggcagctgcagaccagg
ttgccgctgatggaggaacttggagcagatcttcctacgctcctgggcga
gagtcacacctgacagagataggcagtaccagcaggcggccttcacagcc
cttccgcaggccacagcacagtagcacctgttgacttctgcaaagcttgc
ccttggctggccggcttgtccgccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16545518_16546565
seq2: B6Ng01-143I24.b_51_1084

seq1  GAATTCCCTGGAAGTGAGCAGGGGAGACAGGGTATGCCAAGCCTGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGAAGTGAGCAGGGGAGACAGGGTATGCCAAGCCTGGCATC  50

seq1  GTGAAGAACAGACAGCCTGCGCAGAGGTACAAGGGACGGACAGCACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACAGACAGCCTGCGCAGAGGTACAAGGGACGGACAGCACAGTC  100

seq1  AGGGGCATCTGCCTGCCACAGAGGCCATGTGCAGGCCACGGGGGAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATCTGCCTGCCACAGAGGCCATGTGCAGGCCACGGGGGAGGAAC  150

seq1  CGAAGACAAGTCACAGCTCTGAAGGAGCAGGACAACTACAGTCACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGACAAGTCACAGCTCTGAAGGAGCAGGACAACTACAGTCACAGTGA  200

seq1  ACAGGTACAGGGTCTTGTTCTTATCACAGTGCAGATCTGACATCAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACAGGGTCTTGTTCTTATCACAGTGCAGATCTGACATCAATCCT  250

seq1  GCCTTGTTCCAGCTGTGTGATCTCAGGCAGAGAGAGGCCCAGATGTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCCAGCTGTGTGATCTCAGGCAGAGAGAGGCCCAGATGTCTCC  300

seq1  ATACCCTGACTTCCTCCACCGTGAAGGAAGGAAAATGAACCGTGCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGACTTCCTCCACCGTGAAGGAAGGAAAATGAACCGTGCCACTT  350

seq1  GCTTAGCATCAGAAACAGAATAACATACCCAGTGATTCAGCTGTAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCATCAGAAACAGAATAACATACCCAGTGATTCAGCTGTAGGTAC  400

seq1  TGAAGACCCATCACTCCACAGTGGATCACTTCCACTTCAGGAAAGAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCCATCACTCCACAGTGGATCACTTCCACTTCAGGAAAGAATCC  450

seq1  TGGTCAGCAAGCCTGAGGCCTCCTCTAGCCTTACTTGCTGTGTGACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCAAGCCTGAGGCCTCCTCTAGCCTTACTTGCTGTGTGACTCTG  500

seq1  GGAAAGTATCTTGCCCTCCCTGAGCTTCAACCCCTCCATCCGCACGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTATCTTGCCCTCCCTGAGCTTCAACCCCTCCATCCGCACGGTGT  550

seq1  GTGGGGCTGGACCACGCAGGGGTTTCCAGCACTCCCTACTCAGGGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGGACCACGCAGGGGTTTCCAGCACTCCCTACTCAGGGCATCT  600

seq1  CCCCTGCCTCCCGGAGGATGTTGCCTGGCCATAGCCTGCACTGCAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCCGGAGGATGTTGCCTGGCCATAGCCTGCACTGCAGAAGG  650

seq1  AAAGCAGCTACATCCATCAGCCTGGGAGACCTCCAGGCTCCTCCACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTACATCCATCAGCCTGGGAGACCTCCAGGCTCCTCCACAGTG  700

seq1  ATTCACACACACCCAGCCCTCTCCTGCACACCCAGACTTCAATCTGACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACACACCCAGCCCTCTCCTGCACACCCAGACTTCAATCTGACGG  750

seq1  TCTCTGGGCCCCTCTTCACTCATGCCGAGAACCAAAGGGGGGCTTTCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCCCCTCTTCACTCATGCCGAGAACCAAAGGGGGGCTTTCGAA  800

seq1  ATCCAAACTTCAGGAATTAGCATGTTCTGTGGCATGAAATGACTTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACTTCAGGAATTAGCATGTTCTGTGGCATGAAATGACTTATTCA  850

seq1  CTAAGGCTGTGTGTGTTTAATAAAGTCTCCGAGAGACTCGTGAGAAACAG  900
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CTAAGGCTGTGTGTGTTTAATAAAGTCTTCGAGAGACTCGTGAGAAA-AG  899

seq1  TGTGTCTGTACAAGGCAGGGAAGCCTCCCTTAATAACACACCAAGGATTA  950
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TGTGTCTGTACAAGGCAGGGAAGCCTCCCTTAAT-ACACA-CAAGGATTA  947

seq1  TGTCTTTCCTAGAGATTAAAACAAACAAATTTTTAAAATACCTCCTGACC  1000
      ||||||| ||||||||  |||| |||||||||||||||||||| |||| |
seq2  TGTCTTT-CTAGAGAT--AAAC-AACAAATTTTTAAAATACCT-CTGA-C  991

seq1  TAAAGTTTGTGGCTAAGGAGGTGGGCAGCTCCCCACAGGGAGCTGTCC  1048
      |||||||||||||| |||||  |||||||||||  || ||||||||||
seq2  TAAAGTTTGTGGCT-AGGAG--GGGCAGCTCCC--CAAGGAGCTGTCC  1034

seq1: chr12_16718645_16719711
seq2: B6Ng01-143I24.g_69_1145 (reverse)

seq1  GCTGGCGGCCAGGCCGGCCAGCC-AGGGC-AGCTGTGCAGAAGTC-ACAG  47
      |||||||| || ||||||||||| ||||| |||| |||||||||| ||||
seq2  GCTGGCGGACAAGCCGGCCAGCCAAGGGCAAGCTTTGCAGAAGTCAACAG  50

seq1  GTGCTGCTGTGCTGGTGGCTGGCGGGAAGGGCTGTGGAGG-CGCCTGCTG  96
      ||||| ||||||| |||||  || |||||||||||| ||| |||||||||
seq2  GTGCTACTGTGCT-GTGGCCTGC-GGAAGGGCTGTGAAGGCCGCCTGCTG  98

seq1  GTACTGCCTTATCTCTGTCAGGTGTGACTCTCG-CCAGGAGCGTAGGAAG  145
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GTACTGCC-TATCTCTGTCAGGTGTGACTCTCGCCCAGGAGCGTAGGAAG  147

seq1  ATCTGCTCC-AGGTCCTCCATCAGCGGC-ACCTGGTCTGCAGCTG-CAAG  192
      ||||||||| || ||||||||||||||| |||||||||||||||| ||||
seq2  ATCTGCTCCAAGTTCCTCCATCAGCGGCAACCTGGTCTGCAGCTGCCAAG  197

seq1  ACA-TGGTGGTGGCA-CAG-AAATGATGTCAGCACTGCTGGGCAGGTGCA  239
      ||| ||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  ACATTGGTGGTGGCACCAGAAAATGATGTCAGCACTGCTGGGCAGGTGCA  247

seq1  -CAGGCAGCTTGCCACCAATGCTGCTGCACACATCCCAGAA-TATGCAGG  287
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGGCAGCTTGCCACCAATGCTGCTGCACACATCCCAGAATTATGCAGG  297

seq1  CGCACTTAT-AATCACACAGCCTGAAATCGTGATGTCAAGTTACCAAGGC  336
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  CGCACTTATAAATCACACAGCCTGAAATCGTGATGTCAAG-TACCAAGGC  346

seq1  TTGGAGAATAGAGAATATAAAATGAAGCCAGCCACAAACCCACCATCCTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATAGAGAATATAAAATGAAGCCAGCCACAAACCCACCATCCTG  396

seq1  AAAGTTCATAAAGAAAAAAACGTTATCTTTCTCTCCACCTACTGTAAGGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATAAAGAAAAAAACGTTATCTTTCTCTCCACCTACTGTAAGGA  446

seq1  TCGTGGGTACTCAACTTGATTTTTAACCACCACCCTACAAACAGGTTTCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGTACTCAACTTGATTTTTAACCACCACCCTACAAACAGGTTTCC  496

seq1  ATATGTTATGGTCTCCTTGCCTAGTACTGCTGGTGGGTGTAAATGCCTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATGGTCTCCTTGCCTAGTACTGCTGGTGGGTGTAAATGCCTCT  546

seq1  CGTGTGTAGGGGCTACTTGGTCATCCTTGTAGCTACTGAAGATCTCTGTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTAGGGGCTACTTGGTCATCCTTGTAGCTACTGAAGATCTCTGTG  596

seq1  TTTCTTCAAGCAATTCCTCTGTAGGTACTTCTGAAGTATGTGTCTGAAGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAAGCAATTCCTCTGTAGGTACTTCTGAAGTATGTGTCTGAAGT  646

seq1  TCACCATGTTTCTTCCTAGGCAGGCATGCTAGATAGTTTTATGTCAACTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGTTTCTTCCTAGGCAGGCATGCTAGATAGTTTTATGTCAACTT  696

seq1  AACACAAGCTAGAGTAATTTAGGAAGAAGGAACCTCAATTGAGAAAATAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGCTAGAGTAATTTAGGAAGAAGGAACCTCAATTGAGAAAATAT  746

seq1  GCCCACCAGACTGCCCTGGCTGCTGGGCAAGTCTGCCTATGGTGCAATTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAGACTGCCCTGGCTGCTGGGCAAGTCTGCCTATGGTGCAATTT  796

seq1  TCTCGGTTGATGATTGATGTGGGAAGGCCTAGCCTACTGTGGATAGTACT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTTGATGATTGATGTGGGAAGGCCTAGCCTACTGTGGATAGTACT  846

seq1  CCCTCTAAGCAGGTGGTCCTGGATGGTATAAGAAAGCAAGTCAAGCAAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAGCAGGTGGTCCTGGATGGTATAAGAAAGCAAGTCAAGCAAGA  896

seq1  CTGTAAGCAGAACTCTTCCGTGGCCTCTGCATCAGTTCCTGCCCTGTTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCAGAACTCTTCCGTGGCCTCTGCATCAGTTCCTGCCCTGTTTG  946

seq1  AGTTCCTGTCCTGGCCTTCCTCAGTGATGGACTGTGATATGAAACTGCTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTCCTGGCCTTCCTCAGTGATGGACTGTGATATGAAACTGCTG  996

seq1  GCTGAAATACACTCTTTCCACCCCACATTGCTTTTGGTCATGGTGTTTTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATACACTCTTTCCACCCCACATTGCTTTTGGTCATGGTGTTTTA  1046

seq1  TCGCAGCAATAGAAAGCCTATGATTGAATTC  1067
      |||||||||||||||||||||||||||||||
seq2  TCGCAGCAATAGAAAGCCTATGATTGAATTC  1077