BAC Information

Click to search

BAC

Clone NameB6Ng01-144B16
Chromosome12 (Build37)
Map Location 108,688,539 - 108,876,065
singlet/doubletdoublet
Overlap geneLOC100041251, LOC100040497, LOC668151
Upstream geneLOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B16.bB6Ng01-144B16.g
ACCDH941866DH941867
length8691,035
definitionDH941866|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B16, 5' end.DH941867|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,688,539 - 108,689,411)(108,875,030 - 108,876,065)
sequence
gaattctcaggtttacaaacttttgttgcgcaaactttgtttcttgattt
aaaactatcggttaaataaaattgactacagtcagttagtggagagatca
gaagtaggtgggcattgagttcttctccctgaggtggagaagagagaaga
gcgaggaaagaccaggaggataaggactaaggatgagaggagaggacgaa
gctgccatgaggagagatggaccatgagcatgtggtcaagagaaacaagt
atctgatgtacacttctggggaggtagccaggctggcagtagagaagtag
attagggttacccccccccaatagttgtcaaagccaaataaaataacctt
agtctgtggaaactcaggtctaaaacatttattcattagctagtcaggga
tactttcaaatcggttgtactacaacactcattcaaagcatttgccttgc
ctgattagtaatgtatgacttttctggggagatgtgggccaacatgtcct
caccctaggttggacatggatgacagaccaaaaaagaaggaggaagaaga
agaggagaaggaagaggaggaaaaggagaaagaggaggagaaagaggagg
aggaggaaatgaggaaagaaaaacgaatgtttatctgttcatgcaagcct
actcatggagccaaggcaacttaggaacccagtgagctcaaaggctggac
ccagggcttggcttttggcttgcaagagagtgtgtgatgctggtgcaatg
gtttcagcttccagaatccagtgaccatgttctgaattattgctccccag
ttttgtgaggtagcgtgaaggaaactgggctgaatggctatggtgtcaaa
gacttcatctcttgcctct
gaattctctgtggaaatgcagaggctgccttgggtctgagagctcacagc
atgagcggggagaggggctggggctggggcaggtacccaaacaggaatac
gacatagtgagagttcagatggtgttttgcagccttctgtgccacttgct
gctaccttcacatcagaattatgggcatcaagtgagaccaagaatatgga
agagtttttgtaaactccagaagtctcaggaaagcttaccgaatccctct
acaggttctcagaggccttggaaggacagtattccccagctcatttggat
gagttgtaaaggcgcccaggaaatcgtgattatccccaaaccaaccacgt
catctgcaccctgactgtggctctccttggggcctctgttgtttgcttca
ttccttaatttagaacccagaaggatggcagtcagttgggagatgtcata
aatggttcagagagctcccagcatgggagggaagctaacatttgtcagtc
aaccctcacgtggctgtcagtcatggtatgaagtcatttctcattccagg
gcccacaaacacatcacccacctctcctctacaaatatgtctctttcaga
gtcctatcttgtctttgaatgaatacgggaaagttagctatacctttggt
cacctgaagctggaagcaccccccatatcacgggcactgtagggtcacac
tgcctgcctgtcacatttcatgacctgtccattccataagggaaggtgag
tttggctatcattggagacccagcaccaacacggcagtcaatatacagtg
aattgacgacagcattagttgaccgtattgatgaacagctgagtagctgg
gtgaatgatttttcttcagttccccatcctaaaccagtcttgctgaaaat
tgacatctctgaagtcacagacaagttactttgggagcctacaatcacgg
aggcctttcatttgtctttcgcgttgatctctaggatgctcaatgccttg
tcctttcaggctgagctaactagcctacacctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108688539_108689411
seq2: B6Ng01-144B16.b_43_911

seq1  GAATTCTCAGGTTTACAAACTTTTGTTGCGCAAACTTTGTTTCTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTTTACAAACTTTTGTTGCGCAAACTTTGTTTCTTGATTT  50

seq1  AAAACTATCGGTTAAATAAAATTGACTACAGTCAGTTAGTGGAGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCGGTTAAATAAAATTGACTACAGTCAGTTAGTGGAGAGATCA  100

seq1  GAAGTAGGTGGGCATTGAGTTCTTCTCCCTGAGGTGGAGAAGAGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGTGGGCATTGAGTTCTTCTCCCTGAGGTGGAGAAGAGAGAAGA  150

seq1  GCGAGGAAAGACCAGGAGGATAAGGACTAAGGATGAGAGGAGAGGACGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGAAAGACCAGGAGGATAAGGACTAAGGATGAGAGGAGAGGACGAA  200

seq1  GCTGCCATGAGGAGAGATGGACCATGAGCATGTGGTCAAGAGAAACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGAGGAGAGATGGACCATGAGCATGTGGTCAAGAGAAACAAGT  250

seq1  ATCTGATGTACACTTCTGGGGAGGTAGCCAGGCTGGCAGTAGAGAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGTACACTTCTGGGGAGGTAGCCAGGCTGGCAGTAGAGAAGTAG  300

seq1  ATTAGGGTTACCCCCCCCCAATAGTTGTCAAAGCCAAATAAAATAACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTTACCCCCCCCCAATAGTTGTCAAAGCCAAATAAAATAACCTT  350

seq1  AGTCTGTGGAAACTCAGGTCTAAAACATTTATTCATTAGCTAGTCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGAAACTCAGGTCTAAAACATTTATTCATTAGCTAGTCAGGGA  400

seq1  TACTTTCAAATCGGTTGTACTACAACACTCATTCAAAGCATTTGCCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAAATCGGTTGTACTACAACACTCATTCAAAGCATTTGCCTTGC  450

seq1  CTGATTAGTAATGTATGACTTTTCTGGGGAGATGTGGGCCAACATGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGTAATGTATGACTTTTCTGGGGAGATGTGGGCCAACATGTCCT  500

seq1  CACCCTAGGTTGGACATGGATGACAGACCAAAAAAGAAGGAGGAAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGGTTGGACATGGATGACAGACCAAAAAAGAAGGAGGAAGAAGA  550

seq1  AGAGGAGAAGGAAGAGGAGGAAAAGGAGAAAGAGGAGGAGAAAGAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAGGAAGAGGAGGAAAAGGAGAAAGAGGAGGAGAAAGAGGAGG  600

seq1  AGGAGGAAATGAGGAAAGAAAAACGAATGTTTATCTGTTCATGCAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAATGAGGAAAGAAAAACGAATGTTTATCTGTTCATGCAAGCCT  650

seq1  ACTCATGGAGCCAAGGCAACTTAGGAACCCAGTGAGCTCAAAGGCTGGAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTCATGGAGCCAAGGCAACTTAGGAACCCAGTGAGCTCAAAGGCTGG-A  699

seq1  CCAAGGGCTTGGCTTTTGGCTTGCAAGAGAGTGTGTGATGCTGGTTGCAA  750
      || ||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CCCAGGGCTTGGCTTTTGGCTTGCAAGAGAGTGTGTGATGCTGG-TGC-A  747

seq1  ATGGTTTCAGC-TCCAGTATCCAGTGACCCATGTTCTGAAGTATTGCTCC  799
      ||||||||||| ||||| ||||||||| |||||||||||| |||||||||
seq2  ATGGTTTCAGCTTCCAGAATCCAGTGA-CCATGTTCTGAATTATTGCTCC  796

seq1  CCAGTTTTGTGAGGTAGCGTGAAGGAGACTGGGCTGAATGCTTATGGTGT  849
      |||||||||||||||||||||||||| |||||||||||||  ||||||||
seq2  CCAGTTTTGTGAGGTAGCGTGAAGGAAACTGGGCTGAATGGCTATGGTGT  846

seq1  CAGAAGACTTCAGCTCTTGCCTCT  873
      || ||||||||| |||||||||||
seq2  CA-AAGACTTCATCTCTTGCCTCT  869

seq1: chr12_108875030_108876065
seq2: B6Ng01-144B16.g_69_1103 (reverse)

seq1  GGGA-GTGTAGGCTAGTTAGCTCAGCCTGAAA-GACATGGGCTTTGAGCA  48
      |||| ||||||||||||||||||||||||||| ||||  ||| |||||||
seq2  GGGAGGTGTAGGCTAGTTAGCTCAGCCTGAAAGGACA-AGGCATTGAGCA  49

seq1  TCCTAGAGTCCACAGCGAAAGACAAATGAGATGGCTTCTGTGATTTGTGG  98
      ||||||||  ||  ||||||||||||||| | ||| || |||| ||||  
seq2  TCCTAGAGATCAACGCGAAAGACAAATGA-AAGGCCTCCGTGA-TTGT-A  96

seq1  GGCTCACAAAGTAACTTGTCTGTGACTTCAGAGATGTCAATTTTCAGCAA  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAAAGTAACTTGTCTGTGACTTCAGAGATGTCAATTTTCAGCAA  146

seq1  GACTGGTTTTAGATGGGGAACTTGAAG-AAAATCATTCACCCAGCTACTC  197
      |||||||||  |||||||||| ||||| ||||||||||||||||||||||
seq2  GACTGGTTTAGGATGGGGAAC-TGAAGAAAAATCATTCACCCAGCTACTC  195

seq1  AGCTGTTCATCAATACGGTCAACTAATGCTGTCGTCAATTCACTGTATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCATCAATACGGTCAACTAATGCTGTCGTCAATTCACTGTATAT  245

seq1  TGACTGCCGTGTTGGTGCTGGGTCTCCAATGATAGCCAAACTCACCTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCCGTGTTGGTGCTGGGTCTCCAATGATAGCCAAACTCACCTTCC  295

seq1  CTTATGGAATGGACAGGTCATGAAATGTGACAGGCAGGCAGTGTGACCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGAATGGACAGGTCATGAAATGTGACAGGCAGGCAGTGTGACCCT  345

seq1  ACAGTGCCCGTGATAT-GGGGGTGCTTCCAGCTTCAGGTGACCAAAGGTA  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGTGCCCGTGATATGGGGGGTGCTTCCAGCTTCAGGTGACCAAAGGTA  395

seq1  TAGCTAACTTTCCCGTATTCATTCAAAGACAAGATAGGACTCTGAAAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAACTTTCCCGTATTCATTCAAAGACAAGATAGGACTCTGAAAGAG  445

seq1  ACATATTTGTAGAGGAGAGGTGGGTGATGTGTTTGTGGGCCCTGGAATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGTAGAGGAGAGGTGGGTGATGTGTTTGTGGGCCCTGGAATGA  495

seq1  GAAATGACTTCATACCATGACTGACAGCCACGTGAGGGTTGACTGACAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTTCATACCATGACTGACAGCCACGTGAGGGTTGACTGACAAA  545

seq1  TGTTAGCTTCCCTCCCATGCTGGGAGCTCTCTGAACCATTTATGACATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTTCCCTCCCATGCTGGGAGCTCTCTGAACCATTTATGACATCT  595

seq1  CCCAACTGACTGCCATCCTTCTGGGTTCTAAATTAAGGAATGAAGCAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGACTGCCATCCTTCTGGGTTCTAAATTAAGGAATGAAGCAAAC  645

seq1  AACAGAGGCCCCAAGGAGAGCCACAGTCAGGGTGCAGATGACGTGGTTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCCCCAAGGAGAGCCACAGTCAGGGTGCAGATGACGTGGTTGG  695

seq1  TTTGGGGATAATCACGATTTCCTGGGCGCCTTTACAACTCATCCAAATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATAATCACGATTTCCTGGGCGCCTTTACAACTCATCCAAATGA  745

seq1  GCTGGGGAATACTGTCCTTCCAAGGCCTCTGAGAACCTGTAGAGGGATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAATACTGTCCTTCCAAGGCCTCTGAGAACCTGTAGAGGGATTC  795

seq1  GGTAAGCTTTCCTGAGACTTCTGGAGTTTACAAAAACTCTTCCATATTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTTTCCTGAGACTTCTGGAGTTTACAAAAACTCTTCCATATTCT  845

seq1  TGGTCTCACTTGATGCCCATAATTCTGATGTGAAGGTAGCAGCAAGTGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCACTTGATGCCCATAATTCTGATGTGAAGGTAGCAGCAAGTGGC  895

seq1  ACAGAAGGCTGCAAAACACCATCTGAACTCTCACTATGTCGTATTCCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCTGCAAAACACCATCTGAACTCTCACTATGTCGTATTCCTGT  945

seq1  TTGGGTACCTGCCCCAGCCCCAGCCCCTCTCCCCGCTCATGCTGTGAGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTACCTGCCCCAGCCCCAGCCCCTCTCCCCGCTCATGCTGTGAGCT  995

seq1  CTCAGACCCAAGGCAGCCTCTGCATTTCCACAGAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCCAAGGCAGCCTCTGCATTTCCACAGAGAATTC  1035