BAC Information

Click to search

BAC

Clone NameB6Ng01-145G20
Chromosome12 (Build37)
Map Location 73,393,111 - 73,455,326
singlet/doubletdoublet
Overlap geneRtn1
Upstream geneLOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145G20.bB6Ng01-145G20.g
ACCDH942831DH942832
length9221,105
definitionDH942831|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G20, 5' end.DH942832|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,393,111 - 73,394,001)(73,454,202 - 73,455,326)
sequence
gaattcctaaaattatgtcagtattattaagctcttttatagtgggactt
cgattaggtccttttttgatcatcaaaactgcaatgagaactctgccagt
ctcgcaagtgtcaccagttaattgcttttagagagtaaccagactttctc
ctactcagagcacatcccaaaatgttgtaaaacaattgaccaacggtcaa
aaaagggagctaatgatttattataagtggtaggacaaaagataaaatat
tgattgggctgatctatacaaaacttcactaataacttagtaatggtttt
aaaccttcagtggacctgtcgagctgagacaggtgatagatgtttagcca
gataattactcctaatggatatgcctgtaaacattctctgttataaactt
ctatttcaatatatgatttgatttttttgtgtgagcttgtgatgaatttt
gtaaaatgtgattatgtattctgaaggatgtataagtactgaggacaaag
agatgagaaagagagaagaattttttgcctttccccacttagagtagatt
tttccccactttgaagaatttttccctttccccatttaagatctttccac
tcttccccttagatagttttcataggaaactttttacaacgtagtaataa
actctataatcatttcactaagtgtccctttttcttcctgtgatttagga
ctagctagagcccagcagttcctgctgagatgtttacttaatcctttgct
gtttttaggaagaggtgctagtgccagaaactgcagtttctggcctcaga
gaatcacagaaggcaggtcagctacagtagcatagtaacgtagactcaga
caagtaaactttttattattatacagcaaccttaaatatgtggtaaaacc
aagtcttacagggaagtgggag
gaattccttttgctttttacttggtaccaacttgttgggggtggatggaa
ggttcttccgttccaactttagctttagtcaagatctctaagctggaatc
taaaggaaactctttcttaatgtccctgcccctctatgtttggctaccaa
attctgccttgtagagtttggcaggctcggcaaagctaaggacactctcc
tagaagccctcagcagtgccctagagagcagatctgtttggatgcagaat
gctggtcctgaaagacctttctctccctctgtgagtacaagaacctaatt
tctgtatttctcacagacaagatagttttcccccttgaatcctgacagtg
gggaaggtgtcttgtcatgtccctcggcactttaagggaccccacacaca
cacacacacacaccccaggagagaagaaatggggctgtatttcacatagg
ccctcccaacccaccactcaggagctcatcactgggccaccaaaaggctt
cttctactcttctgtcccttcatggagaagagtgagaactctctatgtgc
ctgggctccagctctgaaaggatgtgtcagcttgtattcaaacttgttag
ccctccagatgacttatcctttttctgtggtggctgtctcttcctcccat
gctctgtcacagatgaacaggctcatacatcccactctctctttgagggc
tttggctttgaaattcattttccttggttgctttataatccgaactatct
cttggttttgagaacatttatgattttgcagatgacctagatctgtcttt
gactcttaaacatgaaccatgttttcctgatgctttctatgccttaagaa
ttcttccccgaggggttattatgtatgagtgaacttttgccgagtatggc
tgatttcagaaaacatgtttcaattcaagataactacatcattctagctt
catttaaattcatttggaaaagtttcatattctttttttttttcatctaa
ccatgtaagattttttctttattagaaaactcacatgattagggccattt
gtaaatacagcaagcattattcacttgattacgtagaagaattacctttt
aggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73393111_73394001
seq2: B6Ng01-145G20.b_76_967

seq1  GCTCTTTTATAGTGGGACTTCGATTAGGTCCTTTTTTGATCATCAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTATAGTGGGACTTCGATTAGGTCCTTTTTTGATCATCAAAACT  50

seq1  GCAATGAGAACTCTGCCAGTCTCGCAAGTGTCACCAGTTAATTGCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGAACTCTGCCAGTCTCGCAAGTGTCACCAGTTAATTGCTTTTA  100

seq1  GAGAGTAACCAGACTTTCTCCTACTCAGAGCACATCCCAAAATGTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACCAGACTTTCTCCTACTCAGAGCACATCCCAAAATGTTGTAA  150

seq1  AACAATTGACCAACGGTCAAAAAAGGGAGCTAATGATTTATTATAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGACCAACGGTCAAAAAAGGGAGCTAATGATTTATTATAAGTGG  200

seq1  TAGGACAAAAGATAAAATATTGATTGGGCTGATCTATACAAAACTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAAAAGATAAAATATTGATTGGGCTGATCTATACAAAACTTCACT  250

seq1  AATAACTTAGTAATGGTTTTAAACCTTCAGTGGACCTGTCGAGCTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAGTAATGGTTTTAAACCTTCAGTGGACCTGTCGAGCTGAGAC  300

seq1  AGGTGATAGATGTTTAGCCAGATAATTACTCCTAATGGATATGCCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAGATGTTTAGCCAGATAATTACTCCTAATGGATATGCCTGTAA  350

seq1  ACATTCTCTGTTATAAACTTCTATTTCAATATATGATTTGATTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGTTATAAACTTCTATTTCAATATATGATTTGATTTTTTTGT  400

seq1  GTGAGCTTGTGATGAATTTTGTAAAATGTGATTATGTATTCTGAAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTGTGATGAATTTTGTAAAATGTGATTATGTATTCTGAAGGATG  450

seq1  TATAAGTACTGAGGACAAAGAGATGAGAAAGAGAGAAGAATTTTTTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTACTGAGGACAAAGAGATGAGAAAGAGAGAAGAATTTTTTGCCT  500

seq1  TTCCCCACTTAGAGTAGATTTTTCCCCACTTTGAAGAATTTTTCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTTAGAGTAGATTTTTCCCCACTTTGAAGAATTTTTCCCTTTC  550

seq1  CCCATTTAAGATCTTTCCACTCTTCCCCTTAGATAGTTTTCATAGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAAGATCTTTCCACTCTTCCCCTTAGATAGTTTTCATAGGAAAC  600

seq1  TTTTTACAACGTAGTAATAAACTCTATAATCATTTCACTAAGTGTCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAACGTAGTAATAAACTCTATAATCATTTCACTAAGTGTCCCTT  650

seq1  TTTCTTCCTGTGATTTAGGACTAGCTAGAGCCCAGCAGTTCCTGCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTGTGATTTAGGACTAGCTAGAGCCCAGCAGTTCCTGCTGAGA  700

seq1  TGTTTACTTAATCCTTTGCTGTTTTTAGGAAGAGGTGCTAGTGCCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTAATCCTTTGCTGTTTTTAGGAAGAGGTGCTAGTGCCAGAAA  750

seq1  CTGCAGTTTCTGGCCTCAGAGAATCACAGAAGGCAGGTCAGCTACAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTCTGGCCTCAGAGAATCACAGAAGGCAGGTCAGCTACAGTAG  800

seq1  CATAGTAACGTAGACTCAGACAAGTAAACTTTTTATTATTATACAGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAACGTAGACTCAGACAAGTAAACTTTTTATTATTATACAGCAAC  850

seq1  CTTAAATATGTGGTAAAACCAAGTCTTACA-GGAAGTGGGAG  891
      |||||||||||||||||||||||||||||| |||||||||||
seq2  CTTAAATATGTGGTAAAACCAAGTCTTACAGGGAAGTGGGAG  892

seq1: chr12_73454202_73455326
seq2: B6Ng01-145G20.g_69_1173 (reverse)

seq1  TGCCTAAAAAAATGTATAAATTTCTCTCTACTGTAATCAAGTGAATTATG  50
      |||||   |||| ||    | |||| ||||| |||||||||||||| |||
seq2  TGCCT---AAAAGGT----AATTCT-TCTAC-GTAATCAAGTGAATAATG  41

seq1  CCTTGACTGTATTTACAAATGGCCCTAATCATGTGAGTTTTCTTAATAGA  100
       |||| |||||||||||||||||||||||||||||||||||| ||||| |
seq2  -CTTG-CTGTATTTACAAATGGCCCTAATCATGTGAGTTTTC-TAATA-A  87

seq1  AGAAAAAAATCTTTCCATGGTTTTAGATGGAAAAAAAAAAGAATATGAAA  150
      || |||||||| || |||||  ||||||| ||||||||||||||||||||
seq2  AG-AAAAAATC-TTACATGG--TTAGATGAAAAAAAAAAAGAATATGAAA  133

seq1  CTTTTTCAAAATGAATTTTAAAATGAAGCTAAGAATGATGTAGTTATCCT  200
      | ||||| ||||||||||  |||||||||| ||||||||||||||||| |
seq2  C-TTTTCCAAATGAATTT--AAATGAAGCT-AGAATGATGTAGTTATCTT  179

seq1  GAATTGAAACATGTTTTCTGAAATCAGCCATACTCGGC-AAAGTTCACTC  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATTGAAACATGTTTTCTGAAATCAGCCATACTCGGCAAAAGTTCACTC  229

seq1  ATACATAATAACCCCTCGGGGAAGAATTCTTAAGGCATAGAAAGCATCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATAACCCCTCGGGGAAGAATTCTTAAGGCATAGAAAGCATCAG  279

seq1  GAAAACATGGTTCATGTTTAAGAGTCAAAGACAGATCTAGGTCATCTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATGGTTCATGTTTAAGAGTCAAAGACAGATCTAGGTCATCTGCA  329

seq1  AAATCATAAATGTTCTCAAAACCAAGAGATAGTTCGGATTATAAAGCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAATGTTCTCAAAACCAAGAGATAGTTCGGATTATAAAGCAAC  379

seq1  CAAGGAAAATGAATTTCAAAGCCAAAGCCCTCAAAGAGAGAGTGGGATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAATGAATTTCAAAGCCAAAGCCCTCAAAGAGAGAGTGGGATGT  429

seq1  ATGAGCCTGTTCATCTGTGACAGAGCATGGGAGGAAGAGACAGCCACCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTGTTCATCTGTGACAGAGCATGGGAGGAAGAGACAGCCACCAC  479

seq1  AGAAAAAGGATAAGTCATCTGGAGGGCTAACAAGTTTGAATACAAGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGATAAGTCATCTGGAGGGCTAACAAGTTTGAATACAAGCTGA  529

seq1  CACATCCTTTCAGAGCTGGAGCCCAGGCACATAGAGAGTTCTCACTCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTTCAGAGCTGGAGCCCAGGCACATAGAGAGTTCTCACTCTTC  579

seq1  TCCATGAAGGGACAGAAGAGTAGAAGAAGCCTTTTGGTGGCCCAGTGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGGGACAGAAGAGTAGAAGAAGCCTTTTGGTGGCCCAGTGATG  629

seq1  AGCTCCTGAGTGGTGGGTTGGGAGGGCCTATGTGAAATACAGCCCCATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGAGTGGTGGGTTGGGAGGGCCTATGTGAAATACAGCCCCATTT  679

seq1  CTTCTCTCCTGGGGTGTGTGTGTGTGTGTGTGTGGGGTCCCTTAAAGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTGGGGTGTGTGTGTGTGTGTGTGTGGGGTCCCTTAAAGTGC  729

seq1  CGAGGGACATGACAAGACACCTTCCCCACTGTCAGGATTCAAGGGGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGACATGACAAGACACCTTCCCCACTGTCAGGATTCAAGGGGGAAA  779

seq1  ACTATCTTGTCTGTGAGAAATACAGAAATTAGGTTCTTGTACTCACAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTGTCTGTGAGAAATACAGAAATTAGGTTCTTGTACTCACAGAG  829

seq1  GGAGAGAAAGGTCTTTCAGGACCAGCATTCTGCATCCAAACAGATCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGGTCTTTCAGGACCAGCATTCTGCATCCAAACAGATCTGCT  879

seq1  CTCTAGGGCACTGCTGAGGGCTTCTAGGAGAGTGTCCTTAGCTTTGCCGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGCACTGCTGAGGGCTTCTAGGAGAGTGTCCTTAGCTTTGCCGA  929

seq1  GCCTGCCAAACTCTACAAGGCAGAATTTGGTAGCCAAACATAGAGGGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAACTCTACAAGGCAGAATTTGGTAGCCAAACATAGAGGGGCA  979

seq1  GGGACATTAAGAAAGAGTTTCCTTTAGATTCCAGCTTAGAGATCTTGACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTAAGAAAGAGTTTCCTTTAGATTCCAGCTTAGAGATCTTGACT  1029

seq1  AAAGCTAAAGTTGGAACGGAAGAACCTTCCATCCACCCCCAACAAGTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAGTTGGAACGGAAGAACCTTCCATCCACCCCCAACAAGTTGG  1079

seq1  TACCAAGTAAAAAGCAAAAGGAATTC  1125
      ||||||||||||||||||||||||||
seq2  TACCAAGTAAAAAGCAAAAGGAATTC  1105