BAC Information

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BAC

Clone NameB6Ng01-146K20
Chromosome12 (Build37)
Map Location 76,073,845 - 76,228,851
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneSnapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146K20.bB6Ng01-146K20.g
ACCDH943753DH943754
length1,0291,158
definitionDH943753|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K20, 5' end.DH943754|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,073,845 - 76,074,885)(76,227,700 - 76,228,851)
sequence
gaattccacgtagagtaaaatcttgacctagctcatcctcctccttgttc
tacgtttgtcccccttccattttccccccttacacttccttccaagcttc
caggagtgtcccactcctcatccaacctctacatacacagtcctagttct
cctgcgaatttgaagttaaagttgaaaggcgtaagacagcaatttcctta
gtttaagattccaaccctgtgattctgaatatcaagaacgacaagcaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagagtgaagaaaa
caagtcccaactcttaggagcaaggcctattgttggtagcaagctactat
tttaacagtctctgaaaggtacaatatacttgtcaagacatttggaagta
acctggctatttcaaccataccaacaaatctattcgagttaaataattat
agagtaggaagtaaaaagtaaaaagacattagcgaatataaaatatgaat
gcatcatgaacttaatttggaattctttgtgtttcatacaaaatgggaag
gtcaaagaaaaaaaaatgcgtggatgtgtaagaactgtaaagaacttcaa
gttggaaaaaggcatcaactgcgattacattcatatgccctatttaaaga
acacatcctgaatccagcccccagtgtgaaaataaaggcatttgttgact
gcgttattttttttaatctttcctctaattagttatgcttcagaactgac
tctgtaaactgcttggcactttggacacactaaagaatagtgccctgtca
gataagactgcacttgcttctggatccagagatttgaattaattttaaag
tgacctctatcgctacctttcatctggcaaatgagtcctgaacagaaagt
gagctgctgaagaagtttagaaaacatctgacttatcaggacaggagagg
gagagtgattgtatgaaagggggagggaa
gaattcactctgtataccaggctggcctcaaactcagaaatccacctcct
ctgcctcccaagtgaggggattaaaggtgtgcgccaccgctgcccggctt
gaaacagaaaatcttaatgcctcatcactattaaatactcgagcagtaaa
gagtaattgacccaaaccaagggaatagaaagtacaaatagtttcatcag
gagaccctaataaactccttttccttcttcaggattttacacacgtatat
atgatagccaccattcccctctttcacactccccacccctccccccaaat
gccttcctcgataaatgggtcattctaatcagcctcccaaagcatcaagg
ttcaaggcacatgtgggaagaagaggaagaaagaacacaagagctgaggg
atgggaagagggctttgatctgctgctgtgtggacatggctgttgtacac
atgcatccataacgttgctggggctgcctgcatgtcctctaggtctcttc
cagaatgcagaaggtactgctctgataccaaacccaagaaagacagtaca
gaaaaggaaatgatagatgagtgtcccactctcaacatgatagtccacaa
aactgaatccataaagtattggaggaattatgcatgacaattaaaggggc
tctatcttcaaaaagcaatcctccaaatctgtcctatcagtgaggtggct
aaaaaacaaacaaacaaacaaacaaacaaaacaaacaagcaagcaaacaa
acaaacaaacaaaaagaaacccacatggtcccttcagttggcatagaaaa
agcatttgaaaaattgaaaactcacttataaaaagcctttgaaaaaattc
aacattcattcatgatttaaatccccggaaaagcatgactgggcgatgat
tctttcatgtctcataaggaacagctttgaatgtctgtgcatcttgtgac
taacagtgaaccctatctttggtgaggtgcttaaaacattaaagataaaa
tagtcgatatgggattgattacctggaaacatttttcaagtgaattttga
agtcttcaccatagttagctttgaagtgaagaagttttaattccaatttt
acccccaagtatggcatattatttatatttaagcattgtgtttccctctg
aacttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76073845_76074885
seq2: B6Ng01-146K20.b_47_1075

seq1  GAATTCCACGTAGAGTAAAATCTTGACCTAGCTCATCCTCCTCCTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTAGAGTAAAATCTTGACCTAGCTCATCCTCCTCCTTGTTC  50

seq1  TACGTTTGTCCCCCTTCCATTTTCCCCCCTTACACTTCCTTCCAAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTGTCCCCCTTCCATTTTCCCCCCTTACACTTCCTTCCAAGCTTC  100

seq1  CAGGAGTGTCCCACTCCTCATCCAACCTCTACATACACAGTCCTAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTCCCACTCCTCATCCAACCTCTACATACACAGTCCTAGTTCT  150

seq1  CCTGCGAATTTGAAGTTAAAGTTGAAAGGCGTAAGACAGCAATTTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGAATTTGAAGTTAAAGTTGAAAGGCGTAAGACAGCAATTTCCTTA  200

seq1  GTTTAAGATTCCAACCCTGTGATTCTGAATATCAAGAACGACAAGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGATTCCAACCCTGTGATTCTGAATATCAAGAACGACAAGCAAGA  250

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  300

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGAAGAAAA  350

seq1  CAAGTCCCAACTCTTAGGAGCAAGGCCTATTGTTGGTAGCAAGCTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCAACTCTTAGGAGCAAGGCCTATTGTTGGTAGCAAGCTACTAT  400

seq1  TTTAACAGTCTCTGAAAGGTACAATATACTTGTCAAGACATTTGGAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTCTCTGAAAGGTACAATATACTTGTCAAGACATTTGGAAGTA  450

seq1  ACCTGGCTATTTCAACCATACCAACAAATCTATTCGAGTTAAATAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTATTTCAACCATACCAACAAATCTATTCGAGTTAAATAATTAT  500

seq1  AGAGTAGGAAGTAAAAAGTAAAAAGACATTAGCGAATATAAAATATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGAAGTAAAAAGTAAAAAGACATTAGCGAATATAAAATATGAAT  550

seq1  GCATCATGAACTTAATTTGGAATTCTTTGTGTTTCATACAAAATGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGAACTTAATTTGGAATTCTTTGTGTTTCATACAAAATGGGAAG  600

seq1  GTCAAAGAAAAAAAAATGCGTGGATGTGTAAGAACTGTAAAGAACTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAAAAAAAAATGCGTGGATGTGTAAGAACTGTAAAGAACTTCAA  650

seq1  GTTGGAAAAAGGCATCAACTGCGATTACATTCATATGCCCTATTTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAAAGGCATCAACTGCGATTACATTCATATGCCCTATTTAAAGA  700

seq1  ACACATCCTGAATCCAGCCCCCAGTGTGAAAATAAAGGCATTTGTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCTGAATCCAGCCCCCAGTGTGAAAATAAAGGCATTTGTTGACT  750

seq1  GCGTTATTTTTTTTAATCTTTCCTCTAATTAGTTATGCTTCAGAACTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTATTTTTTTTAATCTTTCCTCTAATTAGTTATGCTTCAGAACTGAC  800

seq1  TCTGTAAACTGCTTGGCACTTTGGACACACTAAAGAATAGTGCCCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACTGCTTGGCACTTTGGACACACTAAAGAATAGTGCCCTGTCA  850

seq1  AGAATAAGACTGCACTTGCTTCTGGATCCAGAGATTTGAATTAATTTTAA  900
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GATAAGACTGCACTTGCTTCTGGATCCAGAGATTTGAATTAATTTTAA  898

seq1  AGTGACCTCTATTCGCTACCTTTCATCTGGCAAATGAGTCCTGAACAAGA  950
      ||||||||||| |||||||||||||||||||||||||||||||||||   
seq2  AGTGACCTCTA-TCGCTACCTTTCATCTGGCAAATGAGTCCTGAACA--G  945

seq1  AAAGTGAGGCTGCTGAAGAAAGTTTAGAAAACATCTGACTTATCAAGGGA  1000
      ||||||| |||||||||| ||||||||||||||||||||||||||  |||
seq2  AAAGTGA-GCTGCTGAAG-AAGTTTAGAAAACATCTGACTTATCA--GGA  991

seq1  CAAGGAGAGGGAGAAGTGAATGGTATGAAGGGGGGAGGGAA  1041
      | ||||||||||| |||| || ||||||| |||||||||||
seq2  C-AGGAGAGGGAG-AGTG-ATTGTATGAAAGGGGGAGGGAA  1029

seq1: chr12_76227700_76228851
seq2: B6Ng01-146K20.g_67_1224 (reverse)

seq1  GGTAAGT--CGAGGGAAAC---ATGCCTCTAATATAAAT-ATATG-CATA  43
      |||||||   |||||||||   ||| ||  ||||||||| ||||| ||||
seq2  GGTAAGTTCAGAGGGAAACACAATG-CTTAAATATAAATAATATGCCATA  49

seq1  CTTGGGGGTAAAAATAGGATATAAAAACTCTTCAC-TCAAAGCTAACTAT  92
      ||||||||| ||||| |||  |||||  ||||||| ||||||||||||||
seq2  CTTGGGGGT-AAAATTGGAATTAAAACTTCTTCACTTCAAAGCTAACTAT  98

seq1  -GTGAAGACTTCAAAATTCACTTGAAAAATGTTT-CAGGTTATCAATCAC  140
       ||||||||||||||||||||||||||||||||| ||||| ||||||| |
seq2  GGTGAAGACTTCAAAATTCACTTGAAAAATGTTTCCAGGTAATCAATCCC  148

seq1  ATATCGACTATTTTATCTTTAATGTTTTAAGCACCTCACCAAAGATAGGG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGACTATTTTATCTTTAATGTTTTAAGCACCTCACCAAAGATAGGG  198

seq1  TTCACTGTTAGTCACAGGTTGCACAGACATTCACAGCTGTTCCTTATGAG  240
      |||||||||||||||| | |||||||||||||| ||||||||||||||||
seq2  TTCACTGTTAGTCACAAGATGCACAGACATTCAAAGCTGTTCCTTATGAG  248

seq1  AACATGGAAG-ATCATCGCCCAGTCATGCTTTTCCGGGGATTTTAAATCA  289
       ||||| ||| ||||||||||||||||||||||||||||| |||||||||
seq2  -ACATGAAAGAATCATCGCCCAGTCATGCTTTTCCGGGGA-TTTAAATCA  296

seq1  TGAATGAATGTTGAATTTTTTTCAAAGGCTTTTTATAAGTGAGTTTTCAA  339
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGTTGAA-TTTTTTCAAAGGCTTTTTATAAGTGAGTTTTCAA  345

seq1  TTTTTCAAATGCTTTTTCTATGCCAACTGAAGGGACCATGTGGGTTTCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAATGCTTTTTCTATGCCAACTGAAGGGACCATGTGGGTTTCTT  395

seq1  TTTGTTTGTTTGTTTGTTTGCTTGCTTGTTTGTTTTGTTTGTTTGTTTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGCTTGCTTGTTTGTTTTGTTTGTTTGTTTGT  445

seq1  TTGTTTGTTTTTTAGCCACCTCACTGATAGGACAGATTTGGAGGATTGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTAGCCACCTCACTGATAGGACAGATTTGGAGGATTGCT  495

seq1  TTTTGAAGATAGAGCCCCTTTAATTGTCATGCATAATTCCTCCAATACTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGATAGAGCCCCTTTAATTGTCATGCATAATTCCTCCAATACTT  545

seq1  TATGGATTCAGTTTTGTGGACTATCATGTTGAGAGTGGGACACTCATCTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTCAGTTTTGTGGACTATCATGTTGAGAGTGGGACACTCATCTA  595

seq1  TCATTTCCTTTTCTGTACTGTCTTTCTTGGGTTTGGTATCAGAGCAGTAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTTTCTGTACTGTCTTTCTTGGGTTTGGTATCAGAGCAGTAC  645

seq1  CTTCTGCATTCTGGAAGAGACCTAGAGGACATGCAGGCAGCCCCAGCAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATTCTGGAAGAGACCTAGAGGACATGCAGGCAGCCCCAGCAAC  695

seq1  GTTATGGATGCATGTGTACAACAGCCATGTCCACACAGCAGCAGATCAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGATGCATGTGTACAACAGCCATGTCCACACAGCAGCAGATCAAA  745

seq1  GCCCTCTTCCCATCCCTCAGCTCTTGTGTTCTTTCTTCCTCTTCTTCCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCCCATCCCTCAGCTCTTGTGTTCTTTCTTCCTCTTCTTCCCA  795

seq1  CATGTGCCTTGAACCTTGATGCTTTGGGAGGCTGATTAGAATGACCCATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTTGAACCTTGATGCTTTGGGAGGCTGATTAGAATGACCCATT  845

seq1  TATCGAGGAAGGCATTTGGGGGGAGGGGTGGGGAGTGTGAAAGAGGGGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGGAAGGCATTTGGGGGGAGGGGTGGGGAGTGTGAAAGAGGGGAA  895

seq1  TGGTGGCTATCATATATACGTGTGTAAAATCCTGAAGAAGGAAAAGGAGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTATCATATATACGTGTGTAAAATCCTGAAGAAGGAAAAGGAGT  945

seq1  TTATTAGGGTCTCCTGATGAAACTATTTGTACTTTCTATTCCCTTGGTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGGTCTCCTGATGAAACTATTTGTACTTTCTATTCCCTTGGTTT  995

seq1  GGGTCAATTACTCTTTACTGCTCGAGTATTTAATAGTGATGAGGCATTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATTACTCTTTACTGCTCGAGTATTTAATAGTGATGAGGCATTAA  1045

seq1  GATTTTCTGTTTCAAGCCGGGCAGCGGTGGCGCACACCTTTAATCCCCTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTGTTTCAAGCCGGGCAGCGGTGGCGCACACCTTTAATCCCCTC  1095

seq1  ACTTGGGAGGCAGAGGAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTAT  1145

seq1  ACAGAGTGAATTC  1152
      |||||||||||||
seq2  ACAGAGTGAATTC  1158