BAC Information

Click to search

BAC

Clone NameB6Ng01-149L12
Chromosome12 (Build37)
Map Location 38,334,425 - 38,335,587
singlet/doubletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L12.bB6Ng01-149L12.g
ACCDH945981DH945982
length1,1711,127
definitionDH945981|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L12, 5' end.DH945982|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaaggcaaatcaaagcaaccctgagat
tccagctcacaccagtgagaatggctaagatcaaaaactcaggtgacagc
aaatgttggcaaggatgtggagaaagaggaacactcctccattgttagtg
ggattgcaaatttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaagatcctacaatacctctcctggac
atatatcccggagatattccaaccggtaagaaggacacatgctccactat
gttcatagcacccttatttataatagccagaagctgggaagaacccagat
gtccctcaacagtggaatagatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcaccctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtacctactgataagtggatattagcccagaaac
ttacaagttacaagttacaatttgcaaaacacataaaactcaagaagaat
gaagaccaaagtgtggacactgtgccccttcttagaattgggaacaaaac
acccatggaaggagttacagagacaaagtttggagctgagacaaaaggat
ggaccatctagagactgtgatacctgggtatccatcccataataagcctc
caaacgctgacaccagtgcatacactagcaagattttgctgaaagagccc
agatatagctgtctcttgtgaggctatgctggggccaacaattacagaat
tggatgctcacagttagctattggatggatcacagggcccccaatggagg
agctagacaaagtacccaaggagctaaaggggtctgcaatcctataggcg
gaacaacatatattaaccagtaccaccagaagcttgtgtctctagctgca
atgtatcagagatgggctagtgaacatcattggaagagagctctttgtct
tgcaaactttatagctcagtacagggacgccagtgtcaagaagatgcgat
gtgggtgtggttggggacggt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaagatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcagaccagtcagaatggctatgatcaaaaattcaggtgacat
cagaatgctggcgtggatgtggagaaagaggaacgctcctcaattgttgg
tgggattttaggcttgtacaaccactctggaaatcagtctggcggttcct
cagaaaattggacataatactaccggaggatccagcaatacctctcctgg
gcatatatccagaagatgccccaactggtaaggacacaattattaatatt
aataagtagatcacgattcaagaaagtaacttcagcttgtccataaaatc
tgccctaaatttgcatcaaagcagagtaatatttgttgtcttaaaacaat
agaaccaagaagaagaatgggactatctaaaagtcatgacaatcatccag
atagctgtacagaactactttgaaagctatctctaaaccagagtgctatt
tccaatgttctgtgaaaattactatgtaaaatttacttttcacaaaactc
ttcctagatttatttttgaaagatctatccattttcattctcctgtttac
aaaaccaatttctcctgctaggctctttggaaattttgttatattttatg
gaataaaacattgttaagtttcagaagaaaacacaattgcagtcatttag
tatagaaggaaaatatagtttggcataagagttctgctgataactaatct
tccgtacagcaattagtaaaaggtagatttagggaaaggagaagaatctc
agatagaagggtcaaacataggaaggaattctacataagcatgtaaatgt
atttaaagtaaataacattaactatactaaaatgtaatcactctactagc
tagagattcatttgcgtgctaggactcttagaacatcttgcaacatcaac
aaattttccctgcatgcttatttgagaactttatctactgaatgcaaata
tctaatggcagtaattgatgatgcaaggtactcgatggataaagtcaaaa
gtgatctattgaaaccaggccaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38334425_38335587
seq2: B6Ng01-149L12.g_69_1195

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAAGATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100

seq1  TTCCACCTCAGACCAGTCAGAATGGCTATGATCAAAAATTCAGGTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCAGACCAGTCAGAATGGCTATGATCAAAAATTCAGGTGACAT  150

seq1  CAGAATGCTGGCGTGGATGTGGAGAAAGAGGAACGCTCCTCAATTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCTGGCGTGGATGTGGAGAAAGAGGAACGCTCCTCAATTGTTGG  200

seq1  TGGGATTTTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  250

seq1  CAGAAAATTGGACATAATACTACCGGAGGATCCAGCAATACCTCTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGACATAATACTACCGGAGGATCCAGCAATACCTCTCCTGG  300

seq1  GCATATATCCAGAAGATGCCCCAACTGGTAAGGACACAATTATTAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATCCAGAAGATGCCCCAACTGGTAAGGACACAATTATTAATATT  350

seq1  AATAAGTAGATCACGATTCAAGAAAGTAACTTCAGCTTGTCCATAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAGATCACGATTCAAGAAAGTAACTTCAGCTTGTCCATAAAATC  400

seq1  TGCCCTAAATTTGCATCAAAGCAGAGTAATATTTGTTGTCTTAAAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAAATTTGCATCAAAGCAGAGTAATATTTGTTGTCTTAAAACAAT  450

seq1  AGAACCAAGAAGAAGAATGGGACTATCTAAAAGTCATGACAATCATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGAAGAAGAATGGGACTATCTAAAAGTCATGACAATCATCCAG  500

seq1  ATAGCTGTACAGAACTACTTTGAAAGCTATCTCTAAACCAGAGTGCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTACAGAACTACTTTGAAAGCTATCTCTAAACCAGAGTGCTATT  550

seq1  TCCAATGTTCTGTGAAAATTACTATGTAAAATTTACTTTTCACAAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTTCTGTGAAAATTACTATGTAAAATTTACTTTTCACAAAACTC  600

seq1  TTCCTAGATTTATTTTTGAAAGATCTATCCATTTTCATTCTCCTGTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGATTTATTTTTGAAAGATCTATCCATTTTCATTCTCCTGTTTAC  650

seq1  AAAACCAATTTCTCCTGCTAGGCTCTTTGGAAATTTTGTTATATTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATTTCTCCTGCTAGGCTCTTTGGAAATTTTGTTATATTTTATG  700

seq1  GAATAAAACATTGTTAAGTTTCAGAAGAAAACACAATTGCAGTCATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACATTGTTAAGTTTCAGAAGAAAACACAATTGCAGTCATTTAG  750

seq1  TATAGAAGGAAAATATAGTTTGGCATAAGAGTTCTGCTGATAACTAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGGAAAATATAGTTTGGCATAAGAGTTCTGCTGATAACTAATCT  800

seq1  TCCGTACAGCAATTAGTAAAAGGTAGATTTTAGGGAAAGGAGAAGAATCT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCGTACAGCAATTAGTAAAAGGTAGA-TTTAGGGAAAGGAGAAGAATCT  849

seq1  CAGATAGAAGGGTCAAAACATAGGAAGGAATTCTACATAAGCATGTAAAA  900
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CAGATAGAAGGGTC-AAACATAGGAAGGAATTCTACATAAGCATGT-AAA  897

seq1  TGTATTTAAAAGTAAATTAACATTAACTATACTAAAAATGTAATCAACTC  950
      ||||||| |||||||| |||||||||||||||| ||||||||||| ||||
seq2  TGTATTT-AAAGTAAA-TAACATTAACTATACT-AAAATGTAATC-ACTC  943

seq1  TACTAGCTAGAGATTCATTTGCGTGCTAGGACTCCTTTAGAACATCTTTG  1000
      ||||||||||||||||||||||||||||||||||  |||||||||| |||
seq2  TACTAGCTAGAGATTCATTTGCGTGCTAGGACTC--TTAGAACATC-TTG  990

seq1  CAACATCAAACAAAATTTCCCTGCATTGCTTTATTTGAGAACCTTTAATC  1050
      ||||||| |||||| |||||||||| ||| ||||||||||||  || |||
seq2  CAACATC-AACAAATTTTCCCTGCA-TGC-TTATTTGAGAAC--TTTATC  1035

seq1  TTACTTGATTGCAAAATATTCTAAAATTGGCAGGTAAATTTGATGATGCA  1100
       ||| ||| ||| ||||| |||||   ||||| ||||  |||||||||||
seq2  -TAC-TGAATGC-AAATA-TCTAA---TGGCA-GTAA--TTGATGATGCA  1075

seq1  AGGGTACTCCAGATTGAATAAAAGTCAAAATAGTGATTCCTATTTAAACA  1150
      | |||||||  ||| ||   |||||||||  ||||||  ||||| |||| 
seq2  A-GGTACTC--GATGGA--TAAAGTCAAA--AGTGAT--CTATTGAAAC-  1115

seq1  CAGGTGCAAGGAA  1163
      ||||  |||||||
seq2  CAGG-CCAAGGAA  1127