BAC Information

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BAC

Clone NameB6Ng01-150N05
Chromosome12 (Build37)
Map Location 33,938,378 - 34,166,423
singlet/doubletdoublet
Overlap geneAtxn7l1, 4930504H06Rik, Twistnb
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream geneLOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N05.bB6Ng01-150N05.g
ACCDH946804DH946805
length942529
definitionDH946804|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N05, 5' end.DH946805|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,165,481 - 34,166,423)(33,938,378 - 33,938,918)
sequence
gaattcagtatttttcaacacacactgtacattatcgtaattaataaata
tgtgcaaaatatacataattaaaatagtgattcaggtacatcatgattcc
tgtcttggagcaaaagatacacaatgtaatgaaagctaaatactatttca
tgtgcttgggccatataatccccttgtgattataataatcggcttttctt
ccattacagaccactgaataaaatgtttactgtccttaattatcacaact
aatagtttcattaacttctatagtaattaaaatttcgatagttaccaacc
actcattcaccagaactttgactactcagttgcacagtagaattaatcta
gctagccacgcagggtagaataaagtccatgtttaaagcaatactccccc
cggtggtgatgaataagaagcgcagagaaattctttagaatttctaaatg
ttacaactccactgactgaaataaattgttttcctcctttttctctttaa
agaaaaaaaactggaaatatatatttttaaataatgatctctgaagaaca
aaacaccatttaatacatagaaagcaaaccttcaagaataagattgcagg
ttacaatgactaatttcaatatgcatattttgatattttagtacattcta
actttaacgtaaaaagactgtgctaggtttttttttccaggtaaaagaaa
gacagacactttcttggatttgaaaaagtcaaaataaaactaaccagtaa
ccccagagctgcctgggactaaaccaccaatcaaagaaaacatatggagg
gactcatggctctagctgcatatgtagcagaggatggactagtcagtcat
caatggaaggagaggcccttggtcctgtgaaggctctatgccccagtata
ggggaatgccagggccagaatgggagtggatgggttggggag
ctggtgagagaggcggcggtgagggggagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagaatatga
atcgcttagacctgaaacatctgagttacagcgtcactcagcccagaaga
ggagatgctaagacgtggttaccacagtctttccgaatggtgcaccagcg
ccatagctaaggtgagggagctttgtcgagatatttgccctttcagtgaa
caggaattgagattaatttggccttgagaattttaaatgcacacattgta
atcattggctgtaccctagagcattgtaaaatcagggttggaaatctttt
aacatctacagtctgagagcaggaactcagtcttgcaagcacattttttt
taaaactcccgagcccagggaagaaagtgtctgcctgtcagatttgcatt
tagtgccttctccttggtgatgcctcatgccccaatgctttctccactca
ctgtgagctggcaggagtccttgcaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34165481_34166423
seq2: B6Ng01-150N05.b_46_987 (reverse)

seq1  CTCCCCAACCCATCCACTCCCATTCCTGGCCCTGGCATTCCCCTATACTG  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCCCCAACCCATCCACTCCCATT-CTGGCCCTGGCATTCCCCTATACTG  49

seq1  GGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTTCCATTGATGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTTCCATTGATGACTG  99

seq1  ACTAGTCCATCCTCTGCTACATATGCAGCTAGAGCCATGAGTCCCTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCATCCTCTGCTACATATGCAGCTAGAGCCATGAGTCCCTCCAT  149

seq1  ATGTTTTCTTTGATTGGTGGTTTAGTCCCAGGCAGCTCTGGGGTTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTTTGATTGGTGGTTTAGTCCCAGGCAGCTCTGGGGTTACTGG  199

seq1  TTAGTTTTATTTTGACTTTTTCAAATCCAAGAAAGTGTCTGTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTATTTTGACTTTTTCAAATCCAAGAAAGTGTCTGTCTTTCTTT  249

seq1  TACCTGGAAAAAAAAACCTAGCACAGTCTTTTTACGTTAAAGTTAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAAAAAAAAACCTAGCACAGTCTTTTTACGTTAAAGTTAGAATG  299

seq1  TACTAAAATATCAAAATATGCATATTGAAATTAGTCATTGTAACCTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAATATCAAAATATGCATATTGAAATTAGTCATTGTAACCTGCAA  349

seq1  TCTTATTCTTGAAGGTTTGCTTTCTATGTATTAAATGGTGTTTTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTTGAAGGTTTGCTTTCTATGTATTAAATGGTGTTTTGTTCTT  399

seq1  CAGAGATCATTATTTAAAAATATATATTTCCAGTTTTTTTTCTTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCATTATTTAAAAATATATATTTCCAGTTTTTTTTCTTTAAAGA  449

seq1  GAAAAAGGAGGAAAACAATTTATTTCAGTCAGTGGAGTTGTAACATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGAGGAAAACAATTTATTTCAGTCAGTGGAGTTGTAACATTTAG  499

seq1  AAATTCTAAAGAATTTCTCTGCGCTTCTTATTCATCACCACCGGGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAAAGAATTTCTCTGCGCTTCTTATTCATCACCACCGGGGGGAG  549

seq1  TATTGCTTTAAACATGGACTTTATTCTACCCTGCGTGGCTAGCTAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTAAACATGGACTTTATTCTACCCTGCGTGGCTAGCTAGATTA  599

seq1  ATTCTACTGTGCAACTGAGTAGTCAAAGTTCTGGTGAATGAGTGGTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTGTGCAACTGAGTAGTCAAAGTTCTGGTGAATGAGTGGTTGGT  649

seq1  AACTATCGAAATTTTAATTACTATAGAAGTTAATGAAACTATTAGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCGAAATTTTAATTACTATAGAAGTTAATGAAACTATTAGTTGTG  699

seq1  ATAATTAAGGACAGTAAACATTTTATTCAGTGGTCTGTAATGGAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAGGACAGTAAACATTTTATTCAGTGGTCTGTAATGGAAGAAAA  749

seq1  GCCGATTATTATAATCACAAGGGGATTATATGGCCCAAGCACATGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATTATTATAATCACAAGGGGATTATATGGCCCAAGCACATGAAATA  799

seq1  GTATTTAGCTTTCATTACATTGTGTATCTTTTGCTCCAAGACAGGAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGCTTTCATTACATTGTGTATCTTTTGCTCCAAGACAGGAATCA  849

seq1  TGATGTACCTGAATCACTATTTTAATTATGTATATTTTGCACATATTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACCTGAATCACTATTTTAATTATGTATATTTTGCACATATTTAT  899

seq1  TAATTACGATAATGTACAGTGTGTGTTGAAAAATACTGAATTC  943
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACGATAATGTACAGTGTGTGTTGAAAAATACTGAATTC  942

seq1: chr12_33938378_33938918
seq2: B6Ng01-150N05.g_67_601

seq1  GAATTCCTGGTGAGAGAGGCGGCGGTGAGGGGGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||      ||||||||||||
seq2  GAATTCCTGGTGAGAGAGGCGGCGGTGAGGGG------GAGAGAGAGAGA  44

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  94

seq1  GAGAGAATATGAATCGCTTAGACCTGAAACATCTGAGTTACAGCGTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATATGAATCGCTTAGACCTGAAACATCTGAGTTACAGCGTCACT  144

seq1  CAGCCCAGAAGAGGAGATGCTAAGACGTGGTTACCACAGTCTTTCCGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAAGAGGAGATGCTAAGACGTGGTTACCACAGTCTTTCCGAAT  194

seq1  GGTGCACCAGCGCCATAGCTAAGGTGAGGGAGCTTTGTCGAGATATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACCAGCGCCATAGCTAAGGTGAGGGAGCTTTGTCGAGATATTTGC  244

seq1  CCTTTCAGTGAACAGGAATTGAGATTAATTTGGCCTTGAGAATTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTGAACAGGAATTGAGATTAATTTGGCCTTGAGAATTTTAAAT  294

seq1  GCACACATTGTAATCATTGGCTGTACCCTAGAGCATTGTAAAATCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATTGTAATCATTGGCTGTACCCTAGAGCATTGTAAAATCAGGGT  344

seq1  TGGAAATCTTTTAACATCTACAGTCTGAGAGCAGGAACTCAGTCTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTTTTAACATCTACAGTCTGAGAGCAGGAACTCAGTCTTGCAA  394

seq1  GCACATTTTTTTTAAAACTCCCGAGCCCAGGGAAGAAAGTGTCTGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTTTTAAAACTCCCGAGCCCAGGGAAGAAAGTGTCTGCCTGT  444

seq1  CAGATTTGCATTTAGTGCCTTCTCCTTGGTGATGCCTCATGCCCCAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGCATTTAGTGCCTTCTCCTTGGTGATGCCTCATGCCCCAATGC  494

seq1  TTTCTCCACTCACTGTGAGCTGGCAGGAGTCCTTGCAAGCC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCACTCACTGTGAGCTGGCAGGAGTCCTTGCAAGCC  535