BAC Information

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BAC

Clone NameB6Ng01-151H01
Chromosome12 (Build37)
Map Location 108,974,760 - 109,150,091
singlet/doubletdoublet
Overlap geneBcl11b
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
Downstream geneSetd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H01.bB6Ng01-151H01.g
ACCDH947257DH947258
length1,124170
definitionDH947257|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H01, 5' end.DH947258|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,974,760 - 108,975,889)(109,149,921 - 109,150,091)
sequence
gaattcaggtggttaccagcacagtgacccacccacttccttacctggaa
acattaactcaaagcggtaagggaatcaagattgttcaatggactcctgg
gaccacgaccctacttctcctcctttgtgagctaaccttggcattacgat
cctgctgatctgagactgcagatctttcaagacattgtattactctttta
attacagcctgatctgcaacccctctgccagggcatgagatctgtgcctt
tctgtgtcacctctgactctcacacatcagccttacttgatgatttatca
cccttagccttgcactgtgtctctgccgtgcatctggtgcccctgatgtc
agttccacaatatctaattgctgtcttctctctcctcacccgagacattg
gacctgcggtggagccctctctcctgtctcctatacacttcagcactggc
caagggctgaaccactccattgttgtagcgtgccagggcctgctcattta
ttgtctgttctcagtgctagggtcttccttgccacgaacccaacaagtgt
tacacaacaagcatagctcagcctcttctgcccccaaacatcatgtgtct
tccactggccctgcctcaccacgtatcttgcctcaacacatgaatctgtc
tcagctggcatcactctgccaatcagcctgactccaaggaagtgacaaga
agcctcggcacagcaccaaaagttttaggggtgcatttctctctacagag
tcccaaatgcaactcaactacacaaagtaaggcagactaatacatgtgtg
tcgttagcaaagactcctttcatcatgtgtcctttcacacagcacatcct
ttcacctgtgtctgcttcagcaaaagcactcagccttagcctttcacctg
tgtccacttcaggaaaacacttcttcacatgttttgcgccagcaaaatac
ccatccaacacaactgactttcaaagacccttaagttttcacttcagagt
atggaaagaatagtggagagatcaagattgtgtctctctggtagctgtgc
acagaagcagaggtcacaagtgacagggactctgtagtcagggctgactt
taaggtatcccatagatcaacacc
tgtgccttcccatctatgttccctccgtcctccccaggctctgcctactc
tttgtggactcctctttaattttcttcctcctttgccccctctccccaaa
ccctcttttctcttcctttcttctctccttcttttcttcctcctcctcct
cttcttcctcctcctccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108974760_108975889
seq2: B6Ng01-151H01.b_44_1167

seq1  GAATTCAGGTGGTTACCAGCACAGTGACCCACCCACTTCCTTACCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGGTTACCAGCACAGTGACCCACCCACTTCCTTACCTGGAA  50

seq1  ACATTAACTCAAAGCGGTAAGGGAATCAAGATTGTTCAATGGACTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACTCAAAGCGGTAAGGGAATCAAGATTGTTCAATGGACTCCTGG  100

seq1  GACCACGACCCTACTTCTCCTCCTTTGTGAGCTAACCTTGGCATTACGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGACCCTACTTCTCCTCCTTTGTGAGCTAACCTTGGCATTACGAT  150

seq1  CCTGCTGATCTGAGACTGCAGATCTTTCAAGACATTGTATTACTCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGATCTGAGACTGCAGATCTTTCAAGACATTGTATTACTCTTTTA  200

seq1  ATTACAGCCTGATCTGCAACCCCTCTGCCAGGGCATGAGATCTGTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCCTGATCTGCAACCCCTCTGCCAGGGCATGAGATCTGTGCCTT  250

seq1  TCTGTGTCACCTCTGACTCTCACACATCAGCCTTACTTGATGATTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCACCTCTGACTCTCACACATCAGCCTTACTTGATGATTTATCA  300

seq1  CCCTTAGCCTTGCACTGTGTCTCTGCCGTGCATCTGGTGCCCCTGATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCCTTGCACTGTGTCTCTGCCGTGCATCTGGTGCCCCTGATGTC  350

seq1  AGTTCCACAATATCTAATTGCTGTCTTCTCTCTCCTCACCCGAGACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACAATATCTAATTGCTGTCTTCTCTCTCCTCACCCGAGACATTG  400

seq1  GACCTGCGGTGGAGCCCTCTCTCCTGTCTCCTATACACTTCAGCACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCGGTGGAGCCCTCTCTCCTGTCTCCTATACACTTCAGCACTGGC  450

seq1  CAAGGGCTGAACCACTCCATTGTTGTAGCGTGCCAGGGCCTGCTCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTGAACCACTCCATTGTTGTAGCGTGCCAGGGCCTGCTCATTTA  500

seq1  TTGTCTGTTCTCAGTGCTAGGGTCTTCCTTGCCACGAACCCAACAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTTCTCAGTGCTAGGGTCTTCCTTGCCACGAACCCAACAAGTGT  550

seq1  TACACAACAAGCATAGCTCAGCCTCTTCTGCCCCCAAACATCATGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAACAAGCATAGCTCAGCCTCTTCTGCCCCCAAACATCATGTGTCT  600

seq1  TCCACTGGCCCTGCCTCACCACGTATCTTGCCTCAACACATGAATCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGCCCTGCCTCACCACGTATCTTGCCTCAACACATGAATCTGTC  650

seq1  TCAGCTGGCATCACTCTGCCAATCAGCCTGACTCCAAGGAAGTGACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGCATCACTCTGCCAATCAGCCTGACTCCAAGGAAGTGACAAGA  700

seq1  AGCCTCGGCACAGCACCAAAAGTTTTAGGGGTGCATTTCTCTCTACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGGCACAGCACCAAAAGTTTTAGGGGTGCATTTCTCTCTACAGAG  750

seq1  TCCCAAATGCAACTCAACTACACAAAGTAAGGCAGACTAATACATGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGCAACTCAACTACACAAAGTAAGGCAGACTAATACATGTGTG  800

seq1  TCGTTAGCAAAGACTCC-TTCATCATGTGTCCTTTCACACAGCACATCCT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCGTTAGCAAAGACTCCTTTCATCATGTGTCCTTTCACACAGCACATCCT  850

seq1  TTCACCTGTGTCTGCTTCAGCAAAAGCACTCAGCCTTAGCCTTTCACCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGTGTCTGCTTCAGCAAAAGCACTCAGCCTTAGCCTTTCACCTG  900

seq1  TGTCCACTTCAGGAAAACACTTCTTCACATG-TTTGCGCCAGCAAAATA-  947
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGTCCACTTCAGGAAAACACTTCTTCACATGTTTTGCGCCAGCAAAATAC  950

seq1  CCATCCAACACAACTGACTTTCCAAAGAACCCTTAAGTTTTCACTTCAGA  997
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  CCATCCAACACAACTGACTTT-CAAAG-ACCCTTAAGTTTTCACTTCAGA  998

seq1  GGTATGGAAGGAATAGTGGAGAGATCAAGAATTGTGTCTCTCTGGTAAGC  1047
       |||||||| ||||||||||||||||||| |||||||||||||||||   
seq2  -GTATGGAAAGAATAGTGGAGAGATCAAG-ATTGTGTCTCTCTGGTA--G  1044

seq1  CTGTGGCACAGAAGGCAGAAGCCAC-AGTGACAGGGGACTCTGTAGTTCA  1096
      |||| |||||||| ||||| | ||| ||||||| |||||||||||| |||
seq2  CTGT-GCACAGAA-GCAGAGGTCACAAGTGACA-GGGACTCTGTAG-TCA  1090

seq1  GGGCTGAC-TTAAAGTATCCAATAAGATCAACACC  1130
      |||||||| |||| |||||| || |||||||||||
seq2  GGGCTGACTTTAAGGTATCCCAT-AGATCAACACC  1124

seq1: chr12_109149921_109150091
seq2: B6Ng01-151H01.g_74_243 (reverse)

seq1  GGAGGAGGAGGAGGAGAAAAGAGGAGGAGGAGGAAGAAAAGAAGGAGAGA  50
      || |||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GGTGGAGGAGGAGGA-AGAAGAGGAGGAGGAGGAAGAAAAGAAGGAGAGA  49

seq1  AGAAAGGAAGAGAAAAGAGGGTTTGGGGAGAGGGGGCAAAGGAGGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGAGAAAAGAGGGTTTGGGGAGAGGGGGCAAAGGAGGAAGAA  99

seq1  AATTAAAGAGGAGTCCACAAAGAGTAGGCAGAGCCTGGGGAGGACGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGAGGAGTCCACAAAGAGTAGGCAGAGCCTGGGGAGGACGGAGG  149

seq1  GAACATAGATGGGAAGGCACA  171
      |||||||||||||||||||||
seq2  GAACATAGATGGGAAGGCACA  170