BAC Information

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BAC

Clone NameB6Ng01-153D09
Chromosome12 (Build37)
Map Location 34,477,822 - 34,644,496
singlet/doubletdoublet
Overlap geneLOC668806, Ferd3l, Twist1
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneHdac9, 4921508M14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D09.bB6Ng01-153D09.g
ACCDH948588DH948589
length635504
definitionDH948588|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D09, 5' end.DH948589|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,643,862 - 34,644,496)(34,477,822 - 34,478,331)
sequence
gaattcactgactatgattttgcaggcagaatgatcccagcgtttttatt
tctaaaggtgttaaaattcctctgattgttaccattttaaaatggagcca
gtccacagggatgcctttcctgtcagtggctgattggcaagacctcttga
gaatgcatgcatgaaaaataaaaataaaacattcttcgtcaaaaagtggg
gtggggggacacaaacgagtgttcagacttctatcagaatgcagaggtgt
ggggggtctgctgctgcccctctgggaatctctgtccacgggcctgtctc
gctttctcttttaaaagtgtgccccacgccctgattcttgtgaatttggt
ctctgctcttctaatttccatgaaaatctttgtcatatagatttattttt
agttatccagctccagagtctctagactgtccattttctccttctctgga
aacaatgacatctgcaaaaacccagaggggaaagtcggttattgaggatg
tctctgtggctgttttctatgaccgctaagccctgttatcactaccagcg
agaattttcgctgaacaacctggaaggatttcagcccaagggcaagagga
agtggggtgggcggaaaggagggggtggaattttg
atcttttcatcacacatctccctttttaatacttgtgtgtttaggtttgg
gccaatctggatgacttaagaacatatcaaaatagagataccgttccttg
atcttttactgcccaaaggctccttttatttacttactttaagtaagggg
cttggagaaaggggataatcattactaatgaatttggtgctggtgaaaaa
taccagatgggccgtcacagggtctggagtccttttacccacaggctaag
gcaaaatacttctctgtgtggtttgattccagatgtaacctggagtctag
attatcttccacgtccagacctgcacagtctcaccttcctgaatcagtat
cttcatatttcagcacccactgcttcctgtatatctcagctgcacagaat
tccctttcttgggttactttttaaaaaaagaaaagtgaaggcatgaagtt
gggaggtagacttgttcaagggcatctgtgtgtgtgtgtgtgggaggggg
gatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34643862_34644496
seq2: B6Ng01-153D09.b_45_679 (reverse)

seq1  CCAAATTCCACCCCCTCCTTTCCGCCCA-CCCACTTCCTCTTGCCCTTGG  49
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAAATTCCACCCCCTCCTTTCCGCCCACCCCACTTCCTCTTGCCCTTGG  50

seq1  GCTGAAATCCTTCCAGGTTGTTCAGCGAAAATTCTCGCTGGTAGTGATAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATCCTTCCAGGTTGTTCAGCGAAAATTCTCGCTGGTAGTGATAA  100

seq1  CAGGGCTTAGCGGTCATAGAAAACAGCCACAGAGACATCCTCAATAACCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTAGCGGTCATAGAAAACAGCCACAGAGACATCCTCAATAACCG  150

seq1  ACTTTCCCCTCTGGGTTTTTGCAGATGTCATTGTTTCCAGAGAAGGAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCCTCTGGGTTTTTGCAGATGTCATTGTTTCCAGAGAAGGAGAA  200

seq1  AATGGACAGTCTAGAGACTCTGGAGCTGGATAACTAAAAATAAATCTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGTCTAGAGACTCTGGAGCTGGATAACTAAAAATAAATCTATA  250

seq1  TGACAAAGATTTTCATGGAAATTAGAAGAGCAGAGACCAAATTCACAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGATTTTCATGGAAATTAGAAGAGCAGAGACCAAATTCACAAGA  300

seq1  ATCAGGGCGTGGGGCACACTTTTAAAAGAGAAAGCGAGACAGGCCCGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCGTGGGGCACACTTTTAAAAGAGAAAGCGAGACAGGCCCGTGG  350

seq1  ACAGAGATTCCCAGAGGGGCAGCAGCAGACCCCCCACACCTCTGCATTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTCCCAGAGGGGCAGCAGCAGACCCCCCACACCTCTGCATTCT  400

seq1  GATAGAAGTCTGAACACTCGTTTGTGTCCCCCCACCCCACTTTTTGACGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGTCTGAACACTCGTTTGTGTCCCCCCACCCCACTTTTTGACGA  450

seq1  AGAATGTTTTATTTTTATTTTTCATGCATGCATTCTCAAGAGGTCTTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTTATTTTTATTTTTCATGCATGCATTCTCAAGAGGTCTTGCC  500

seq1  AATCAGCCACTGACAGGAAAGGCATCCCTGTGGACTGGCTCCATTTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCACTGACAGGAAAGGCATCCCTGTGGACTGGCTCCATTTTAAA  550

seq1  ATGGTAACAATCAGAGGAATTTTAACACCTTTAGAAATAAAAACGCTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAATCAGAGGAATTTTAACACCTTTAGAAATAAAAACGCTGGG  600

seq1  ATCAAACTGGCCTGCAAAATCATAGTCAGTGAATTC  635
      ||||  || |||||||||||||||||||||||||||
seq2  ATCATTCT-GCCTGCAAAATCATAGTCAGTGAATTC  635

seq1: chr12_34477822_34478331
seq2: B6Ng01-153D09.g_70_579

seq1  GAATTCATCTTTTCATCACACATCTCCCTTTTTAATACTTGTGTGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTCATCACACATCTCCCTTTTTAATACTTGTGTGTTTAG  50

seq1  GTTTGGGCCAATCTGGATGACTTAAGAACATATCAAAATAGAGATACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCCAATCTGGATGACTTAAGAACATATCAAAATAGAGATACCGT  100

seq1  TCCTTGATCTTTTACTGCCCAAAGGCTCCTTTTATTTACTTACTTTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATCTTTTACTGCCCAAAGGCTCCTTTTATTTACTTACTTTAAGT  150

seq1  AAGGGGCTTGGAGAAAGGGGATAATCATTACTAATGAATTTGGTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTTGGAGAAAGGGGATAATCATTACTAATGAATTTGGTGCTGGT  200

seq1  GAAAAATACCAGATGGGCCGTCACAGGGTCTGGAGTCCTTTTACCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCAGATGGGCCGTCACAGGGTCTGGAGTCCTTTTACCCACAG  250

seq1  GCTAAGGCAAAATACTTCTCTGTGTGGTTTGATTCCAGATGTAACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCAAAATACTTCTCTGTGTGGTTTGATTCCAGATGTAACCTGGA  300

seq1  GTCTAGATTATCTTCCACGTCCAGACCTGCACAGTCTCACCTTCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATTATCTTCCACGTCCAGACCTGCACAGTCTCACCTTCCTGAAT  350

seq1  CAGTATCTTCATATTTCAGCACCCACTGCTTCCTGTATATCTCAGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTCATATTTCAGCACCCACTGCTTCCTGTATATCTCAGCTGCA  400

seq1  CAGAATTCCCTTTCTTGGGTTACTTTTTAAAAAAAGAAAAGTGAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCCCTTTCTTGGGTTACTTTTTAAAAAAAGAAAAGTGAAGGCAT  450

seq1  GAAGTTGGGAGGTAGACTTGTTCAAGGGCATCTGTGTGTGTGTGTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGGAGGTAGACTTGTTCAAGGGCATCTGTGTGTGTGTGTGTGGG  500

seq1  AGGGGGGATG  510
      ||||||||||
seq2  AGGGGGGATG  510