BAC Information

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BAC

Clone NameB6Ng01-153M24
Chromosome12 (Build37)
Map Location 107,452,204 - 107,453,355
singlet/doubletsinglet
Overlap geneLOC100040404
Upstream geneTcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386
Downstream geneLOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M24.bB6Ng01-153M24.g
ACCDH949019DH949020
length1,1561,168
definitionDH949019|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M24, 5' end.DH949020|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctaaaaagagtggcaaagctctctccctagtgctgtgctttga
atgggaattggccccctaagctctcgtatttgaatgcttggtccgtagtg
tgtagtgccattttggaaggttgcagaaggtttaggagggagtgtgccac
ttgggtcttgctttgggcctttgaggttttacaacccgtccccacaatcc
tgccaccaagccgtcctcacttcaatggactgtgacctcaaactctgagc
tcttccttaagtgacttgtgtcaggtactttgtgacagtaaccagggaag
taaataattcagtggggttcaagggacagaaatggatctgaagacattga
ctggctttctcctattcatcagtagccattcttggtcctctagtttatgc
gtgggtgtgagaacttactttctgggaagtaagtttggaagctgtggcat
ctggggacacaggaaaggtgtctcaagcccattttttttatccttgccag
ggttcctacccatccaaagaagaagcactctaggagaggtccaggcccgg
ggactcttggatctaagctcttggatacctgcccctctgtcttgattcaa
cctgcttaattcagtttggatctgaacttgttgtcactgagagttgagct
catcttgaccagtaacagccaggaggaacatttatttcattgagtagtgt
ctacaactgagcagagtctgtcacagagaattggtgccagacttgtagtc
ccggcccagatctcaaggcacagagaacgcagggaagccaaggctttgaa
tttagaaagacttggattgccattagaatgtgaactcttatcagctttgt
gatcctaggcaagttacacaccctctctggatgtgctctgttctcttgga
gtcccactacctacctagctaaatgttgaagagctggcagcatgaaagca
tttggtccagagatatcacttaatggctgccaagttcataagctttatta
acttctttaggcaaaaaagtttcagtttatcaaatgtgtgcaagttcctt
gaggcattaacagtgggcttccttcccgttacctctatagacaggcttgc
tagaggggggttgctatctgaactcccacttagacccaacgctaggttgt
acactc
gaattctacgtccagatctgctggcagcaggaagagagtaagacactggg
cctggcttgaacttctgaaacctcaaatcccacccttagtgatacacttc
atccaacaaaactacacctactccaacaaggccacatctcccaatagtgc
caatctctatgagcctgtgggggccatttttatttaaaccaccacaatgt
aacatcaattaagagactcattgcttatcgtatctaagtttgagatacta
aaaggatgtgcctcgagttattctaaatttataatgtgtttgtgattgta
tgacagatagttatgtcatattaggaataaatatgagctggttaaatgta
taatgcatttgctatttcacctggtatagttacatcatggtgggcatagt
tatgacctggttattattttcatatggaagttaagcatgacctaaggaaa
tatgattgtgtttcaagttgacaagaggtggacttttgatggcaatgctc
aattgtcaacaagactactaaaaattaactaaaacccaagtgtctgggca
cacatgggcgagttgagtttttgttgttgttttgttttgttttaagattt
atttatgtattttatgtatatgagtacactgttgctttcttcagacacac
cagaagagggcatcagatcccattacagatggttgtaagccacattgtgg
tttctgggacttgaaatcagaacctctggaagagcagccagaactcttaa
ccactgagccatctctccagccccaagaattgttttcctaattaagtcat
ttgaagtggtaagactcacttctaatttggacctttgaggtgggaagata
atctagatcttttatgatctctagatcgtgagacgatcctcctttaatct
gggcagcaccttctactggcagtctgtctaaaggaggtggaagaaggaag
tttgttctctctttggcccgcttgcttttttctcccactttgcaaatctg
gttcttacactggcatcagagccacattcttcagatgccatgtaaatgaa
ggaagcagatatattatccagtcttcagaacggaacacaattgggacctt
ggcactctcatgtgggaagtccaattgataactaggggtaacacacctgt
gtgccattaatagaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107452204_107453355
seq2: B6Ng01-153M24.b_41_1196

seq1  GAATTCCCTAAAAAGAGTGGCAAAGCTCTCTCCCTAGTGCTGTGCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAAAAGAGTGGCAAAGCTCTCTCCCTAGTGCTGTGCTTTGA  50

seq1  ATGGGAATTGGCCCCCTAAGCTCTCGTATTTGAATGCTTGGTCCGTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTGGCCCCCTAAGCTCTCGTATTTGAATGCTTGGTCCGTAGTG  100

seq1  TGTAGTGCCATTTTGGAAGGTTGCAGAAGGTTTAGGAGGGAGTGTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGCCATTTTGGAAGGTTGCAGAAGGTTTAGGAGGGAGTGTGCCAC  150

seq1  TTGGGTCTTGCTTTGGGCCTTTGAGGTTTTACAACCCGTCCCCACAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTTGCTTTGGGCCTTTGAGGTTTTACAACCCGTCCCCACAATCC  200

seq1  TGCCACCAAGCCGTCCTCACTTCAATGGACTGTGACCTCAAACTCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAAGCCGTCCTCACTTCAATGGACTGTGACCTCAAACTCTGAGC  250

seq1  TCTTCCTTAAGTGACTTGTGTCAGGTACTTTGTGACAGTAACCAGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTAAGTGACTTGTGTCAGGTACTTTGTGACAGTAACCAGGGAAG  300

seq1  TAAATAATTCAGTGGGGTTCAAGGGACAGAAATGGATCTGAAGACATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTCAGTGGGGTTCAAGGGACAGAAATGGATCTGAAGACATTGA  350

seq1  CTGGCTTTCTCCTATTCATCAGTAGCCATTCTTGGTCCTCTAGTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCTCCTATTCATCAGTAGCCATTCTTGGTCCTCTAGTTTATGC  400

seq1  GTGGGTGTGAGAACTTACTTTCTGGGAAGTAAGTTTGGAAGCTGTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGAGAACTTACTTTCTGGGAAGTAAGTTTGGAAGCTGTGGCAT  450

seq1  CTGGGGACACAGGAAAGGTGTCTCAAGCCCATTTTTTTTATCCTTGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACACAGGAAAGGTGTCTCAAGCCCATTTTTTTTATCCTTGCCAG  500

seq1  GGTTCCTACCCATCCAAAGAAGAAGCACTCTAGGAGAGGTCCAGGCCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTACCCATCCAAAGAAGAAGCACTCTAGGAGAGGTCCAGGCCCGG  550

seq1  GGACTCTTGGATCTAAGCTCTTGGATACCTGCCCCTCTGTCTTGATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTGGATCTAAGCTCTTGGATACCTGCCCCTCTGTCTTGATTCAA  600

seq1  CCTGCTTAATTCAGTTTGGATCTGAACTTGTTGTCACTGAGAGTTGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTAATTCAGTTTGGATCTGAACTTGTTGTCACTGAGAGTTGAGCT  650

seq1  CATCTTGACCAGTAACAGCCAGGAGGAACATTTATTTCATTGAGTAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGACCAGTAACAGCCAGGAGGAACATTTATTTCATTGAGTAGTGT  700

seq1  CTACAACTGAGCAGAGTCTGTCACAGAGAATTGGTGCCAGACTTGTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTGAGCAGAGTCTGTCACAGAGAATTGGTGCCAGACTTGTAGTC  750

seq1  CCGGCCCAGATCTCAAGGCACAGAGAACGCAGGGAAGCCAAGGCTTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCAGATCTCAAGGCACAGAGAACGCAGGGAAGCCAAGGCTTTGAA  800

seq1  TTTAGAAAGACTTGGATTGCCATTAGAATGTGAACTCTTATCAGCTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGACTTGGATTGCCATTAGAATGTGAACTCTTATCAGCTTTGT  850

seq1  GATCCTAGGCAAGTTACACACCCTCTCTGGATGTGCTCTGTTCTCTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGGCAAGTTACACACCCTCTCTGGATGTGCTCTGTTCTCTTGGA  900

seq1  GTCCCACTACCTACCTAGCTAAATGTTGAAGAGCTGGCAGCATGAAAAGC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCCACTACCTACCTAGCTAAATGTTGAAGAGCTGGCAGCATG-AAAGC  949

seq1  ATTTGGTCCAGAGATATCACTTAATGGCTGCCAAGTTCAT-AGC-TTATT  998
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  ATTTGGTCCAGAGATATCACTTAATGGCTGCCAAGTTCATAAGCTTTATT  999

seq1  AAC-TCTTTAGGCAAAAAAGTTCCAGTTTTATC-AATGTGT-CAAG-TCC  1044
      ||| |||||||||||||||||| ||| |||||| ||||||| |||| |||
seq2  AACTTCTTTAGGCAAAAAAGTTTCAG-TTTATCAAATGTGTGCAAGTTCC  1048

seq1  TTGAGCCAATTAACCAGT-GGCTTCCCTCCCCGTACCTCTATAGACAGCC  1093
      ||||| | ||||| |||| ||||||| ||||  ||||||||||||||| |
seq2  TTGAGGC-ATTAA-CAGTGGGCTTCCTTCCCGTTACCTCTATAGACAGGC  1096

seq1  TTGC-AGA-GGGGGTTTCTATCTGACACCCCACTTTAGCACAACAGCTAG  1141
      |||| ||| ||||||| ||||||||   |||||||   | |||| |||||
seq2  TTGCTAGAGGGGGGTTGCTATCTGAACTCCCACTTAGACCCAAC-GCTAG  1145

seq1  GTTGGACACTC  1152
      |||| ||||||
seq2  GTTGTACACTC  1156