BAC Information

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BAC

Clone NameB6Ng01-154N17
Chromosome12 (Build37)
Map Location 85,469,397 - 85,470,424
singlet/doubletsinglet
Overlap geneDnalc1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6
Downstream genePnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N17.bB6Ng01-154N17.g
ACCDH949788DH949789
length1,2271,020
definitionDH949788|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N17, 5' end.DH949789|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagggctcccggaagagcagtaccactgagccatctctccaaccc
ccaacactttgttgttgttttaaagaaaaatttcagtcgttcattttacc
agtgaagactcaggggccagatgttggagtgaaagcctgctagctcagag
aggcagagaaaacacccagctggccttcctactccaccaacatcccagaa
ggaataagcctttctctgtctccacactttcttaaattccttccaactca
atgtccttcctttctgtttactcatatccactccctgtcagtttgttctg
cctcttgacctagaatggacttcatttagctcttggattaaagatgtgtg
ctaggcctgagccacaccacgagagttcacaatctctgggctcacaatgc
aaataaatatcctgcaacaaagcacaattgccaatagcaacctgggagga
aagggtttatttgctgattcatccacatcactgcaccactgaaggaagtc
aggacaggaactcaagcacagtaggaattagaagcaggagctcatgcaga
ggccacggtgctgcttactggcttgctcttcacagcttgctcagcctgct
ttctcatagaccccaggaccagcagcccagggactgtaccacccacaaag
ggctgggcccgcctccattagtcattaagtaagaagatgtcctacaggct
tgcctatagtcatatcttctggtggcattttctcaaaacgaggtccctct
cagatgactatagcttgtgttaaactgatataaaactagccagaacagag
acttttttctttttaatttaaaagtcatattttatttatttatttatttc
ctaagaggagggtgttacacatgccacttacatacaacttgcattgtggg
gaggggtctaccctttcctaccaccttgtggttctgggcatcaaattcag
ttactgtgcacttgctacttgagctacttttagcccatgttaagactttt
aaaattctattttgtagtgaaacttaaagctctttgaatcagtgatggta
tttgctggaagacatgtgaggaggttttctgatgaccagtgaggactagc
gcctctgagacttagctgagcaacagggtaaagagttctgcctaagcaag
catatgtaagacgtatagaattctttgccatgactgaccatgtgctcaac
gtcgttagttgaagcacgtcgttaggc
gaattccaggacagttagagctacacagaaaaaccctatcttgggaaacc
aaaaccaaaccaaaacaaacaaaacaaaacaaaacaaaaaagactttctt
ttctgaccaagtagaccaggctagccagccagttcagggatctggccgtc
ttcgcctcactaggtctgggattgcaagtgcacaacaccagctttttcat
gggtttgggaatgagactcaggccttcatgctagctctgcactgtccact
cagcctacaacacactcagctgatgtcacggcctatcaaaggaccatgac
ttgtgttgtttgagaagcctggcctggtgacagtggtgacggcataattg
atcctgtctctttctgtccttcagttagctgtcccacagatgccagagtt
ctcattctgaaggcaccattctccacagcagagacctttcatcagtcctc
ttgcctaatagacacttagtgtctaacgttcctatctgaatcagctaaaa
gctcacactgccttgtcctcaaacggggctggaccatttctttgatggct
tggttgttggttttctttgattcatttgtttttgtttggaacatggtctc
actgtgtagccctggctgtcctggaactcactatgtagacctagttagcc
tcaaactcatagagacccacctgcctctcctttctgggtgctgggattga
aagtgtgtgctgccatgcctggccgtacattctttatgacttttgtatgt
ttgcttatccagtgctccgcactgagtacagccttgctgtctcacaggaa
aaatccgtgagaattaaggtcagggtcagtgtcccatcaatgccacagcc
tctctaggacctcccagagctccacgtttcaatctttactttagagtatt
tataatttactttgggttttacatttgcctactaatgcagtaatgtaaga
tatgaaatatggagtttatatgtgcatataaaatggaagtcttaagcctt
gggatggtagtgtcataccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85469397_85470424
seq2: B6Ng01-154N17.g_67_1086

seq1  GAATTCCAGGACAGTTAGAGCTACACAGAAAAACCCTATCTTGGGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTTAGAGCTACACAGAAAAACCCTATCTTGGGAAACC  50

seq1  AAAACCAAACCAAAACAAACAAAACAAAACAAAACAAAAAAGACTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACCAAAACAAACAAAACAAAACAAAACAAAAAAGACTTTCTT  100

seq1  TTCTGACCAAGTAGACCAGGCTAGCCAGCCAGTTCAGGGATCTGGCCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCAAGTAGACCAGGCTAGCCAGCCAGTTCAGGGATCTGGCCGTC  150

seq1  TTCGCCTCACTAGGTCTGGGATTGCAAGTGCACAACACCAGCTTTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTCACTAGGTCTGGGATTGCAAGTGCACAACACCAGCTTTTTCAT  200

seq1  GGGTTTGGGAATGAGACTCAGGCCTTCATGCTAGCTCTGCACTGTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGGAATGAGACTCAGGCCTTCATGCTAGCTCTGCACTGTCCACT  250

seq1  CAGCCTACAACACACTCAGCTGATGTCACGGCCTATCAAAGGACCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACAACACACTCAGCTGATGTCACGGCCTATCAAAGGACCATGAC  300

seq1  TTGTGTTGTTTGAGAAGCCTGGCCTGGTGACAGTGGTGACGGCATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTTTGAGAAGCCTGGCCTGGTGACAGTGGTGACGGCATAATTG  350

seq1  ATCCTGTCTCTTTCTGTCCTTCAGTTAGCTGTCCCACAGATGCCAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTCTTTCTGTCCTTCAGTTAGCTGTCCCACAGATGCCAGAGTT  400

seq1  CTCATTCTGAAGGCACCATTCTCCACAGCAGAGACCTTTCATCAGTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGAAGGCACCATTCTCCACAGCAGAGACCTTTCATCAGTCCTC  450

seq1  TTGCCTAATAGACACTTAGTGTCTAACGTTCCTATCTGAATCAGCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAATAGACACTTAGTGTCTAACGTTCCTATCTGAATCAGCTAAAA  500

seq1  GCTCACACTGCCTTGTCCTCAAACGGGGCTGGACCATTTCTTTGATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACTGCCTTGTCCTCAAACGGGGCTGGACCATTTCTTTGATGGCT  550

seq1  TGGTTGTTGGTTTTCTTTGATTCATTTGTTTTTGTTTGGAACATGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTGGTTTTCTTTGATTCATTTGTTTTTGTTTGGAACATGGTCTC  600

seq1  ACTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCTAGTTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCTAGTTAGCC  650

seq1  TCAAACTCATAGAGACCCACCTGCCTCTCCTTTCTGGGTGCTGGGATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCATAGAGACCCACCTGCCTCTCCTTTCTGGGTGCTGGGATTGA  700

seq1  AAGTGTGTGCTGCCATGCCTGGCCGTACATTCTTTATGACTTTTGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGCTGCCATGCCTGGCCGTACATTCTTTATGACTTTTGTATGT  750

seq1  TTGCTTATCCAGTGCTCCGCACTGAGTACAGCCTTGCTGTCTCACAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATCCAGTGCTCCGCACTGAGTACAGCCTTGCTGTCTCACAGGAA  800

seq1  AAATCCGTGAGAAATTAAGGTCAGGGTCAGTGTCCCATCAAATGCCACAG  850
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AAATCCGTGAG-AATTAAGGTCAGGGTCAGTGTCCCATC-AATGCCACAG  848

seq1  CCTCTCTAGGACCTCCCAGAGCTCCACGTTACAATCTTTACTTTAGAGTA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTCTAGGACCTCCCAGAGCTCCACGTTTCAATCTTTACTTTAGAGTA  898

seq1  TTTATAATTTACCTTGGGTTTTAACATTTGCCTACTAATGCAGTTAATGT  950
      |||||||||||| ||||||||| |||||||||||||||||||| ||||||
seq2  TTTATAATTTACTTTGGGTTTT-ACATTTGCCTACTAATGCAG-TAATGT  946

seq1  AAAGATATGTAAATTATGGAGTTTTATATGGTGCATATAAAAT-GAAGTC  999
       ||||||||  || ||||||| ||||||| ||||||||||||| ||||||
seq2  -AAGATATG--AAATATGGAG-TTTATAT-GTGCATATAAAATGGAAGTC  991

seq1  TAAAG-CTGGGTATGGTAGTGTGCATACCC  1028
      | ||| || || |||||||||| |||||||
seq2  TTAAGCCTTGGGATGGTAGTGT-CATACCC  1020