BAC Information

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BAC

Clone NameB6Ng01-156J23
Chromosome12 (Build37)
Map Location 116,629,899 - 116,844,440
singlet/doubletdoublet
Overlap geneIgh, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328
Upstream geneIghv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
Downstream geneIghv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156J23.bB6Ng01-156J23.g
ACCDH951077DH951078
length1,154528
definitionDH951077|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J23, 5' end.DH951078|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,843,284 - 116,844,440)(116,629,899 - 116,630,431)
sequence
gaattcactaataccctgaggatgttaccctgtgaactgacaattcacag
gacttcacatggattcttattagtaatggaaaagaggagatgaattcaat
tggtcctcctccttctatgctgtagtattaggtgcatccaatttgctaac
ttgaatttagattacaatatatatgaataatgtgaattcatgtagtacat
atttttgttttaacatgagttgctattcttcagaaaattaaatacacata
tttaatcacatattcctacatagtgctatttgtttcccccatttctggga
caatattacaaatatctccttcattagtgaaaatatcaactactgtaaag
cttagctagcatgcctttgcaggaataagaacatcctggatgaaagctac
acagggagaggtaaaactttctaagcacacacattctccatgcattagga
tcatggtccatgataattttctctattccttcttcccattaaatgcatgt
acctgcaggttgggaaacagattgtgtttcagaatacatttgcttgattt
ccacttccttctcaatgcaaatatttttgaagtgttaattttgctatgag
taccacagtggttcttgctctttctgtggactcctgtctgtgagtgttcc
aggaattcacacatgaacacatgtggggctgcatctgagctccagactca
ctgttatcattctgtcctcagatgctctggcccaggtaaagcctggtgaa
tgcaacaaagaccctgatctctcttgtttacacctcattacaaatgggaa
ctgttagaggtagatcctactgcttttccacgaagaaagcacatgagttt
gagagggtcgttgacaataaagtataaaaacctttaatttatatgatgag
atatcagtcatcacctccagataaacaagagccatttctcctgaatctga
gccctgtaagcgcactagctttagaatatgtactgctgaacccagactgg
gcaacttcagagaataaaataggaaatttaccttgcagaaaggttcagaa
tcgcaggggcacaatggggccacgaattccttagcagaggaaattgggtg
tgtggtgcagggggatctgcatccttttgggttcctttcttaacttacag
tacc
caaaaacacaaacaaaattttggatatgttggcatttgataattggtgat
gaaaacatgttcactttttctttggaaaattctaggtgttgcttattact
agagaatgaaatatatatgtgtttgtgtgtgtgtgtgtctgtctgtgtgt
gtgtgtgtgtgtgtgtgtagcattgattggactctctatattgttagtta
atgaaataaaagtgttcagttagtccaaaagattaattggaaatttccca
agaaaatcagaaagctatagtggggtatatatgatcctgatatatttcat
atataaataaaaatataaaagaataagcaaaatcattctgataaaggaat
aattttacatgtgattagaattttcatggaaataaatatttcacactgtg
caaaatttacccataatttctgctctttcatttcttgactgtcccatttt
ttctattatgctaaacactcttgtttatacactataatgcactgaaatac
ataatttgtatataagaatgtaatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116843284_116844440
seq2: B6Ng01-156J23.b_45_1198 (reverse)

seq1  GGTACATGTAAGTTAAGAAAGGAAACCACAAAGGATGCAGAATCCCCTGC  50
      ||||| |||||||||||||||||| ||| ||||||||||||  |||||||
seq2  GGTAC-TGTAAGTTAAGAAAGGAACCCA-AAAGGATGCAGATCCCCCTGC  48

seq1  A-CACACA-CCAAATCCCTCTGCT-AGGGATTCGTGGCCCCATTGTGCCC  97
      | |||||| |||| | |||||||| ||| |||||||||||||||||| ||
seq2  ACCACACACCCAATTTCCTCTGCTAAGGAATTCGTGGCCCCATTGTG-CC  97

seq1  CCTGCTGGTTCTGAACTTATCTGC-AGGTAGATTTCCTATTGTATTCTCT  146
      ||||| | |||||||| | ||||| ||||| |||||||||| ||||||||
seq2  CCTGC-GATTCTGAACCTTTCTGCAAGGTAAATTTCCTATTTTATTCTCT  146

seq1  GAAGTTGCCCAGTCTGAGTTCAGCAGTAACATATTCTTAAAGCTAGTGCG  196
      |||||||||||||||| |||||||||| |||||||| |||||||||||||
seq2  GAAGTTGCCCAGTCTGGGTTCAGCAGT-ACATATTC-TAAAGCTAGTGCG  194

seq1  CTTACAGGGCTCAGATTCAGGGAGAAATGGCTCTTGTTTATCTGGAGGTG  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTACAGGGCTCAGATTCA-GGAGAAATGGCTCTTGTTTATCTGGAGGTG  243

seq1  ATGACTGATATCTCATCATATAAATTAAAGGTTTTTATACCTTATTGTCA  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGACTGATATCTCATCATATAAATTAAAGGTTTTTATACTTTATTGTCA  293

seq1  ACGACCCTCTCAAACTCATGTGCTTTCTTCGTGGAAAAGCAGTAGGATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCTCTCAAACTCATGTGCTTTCTTCGTGGAAAAGCAGTAGGATCT  343

seq1  ACCTCTAACAGTTCCCATTTGTAATGAGGTGTAAACAAGAGAGATCAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAACAGTTCCCATTTGTAATGAGGTGTAAACAAGAGAGATCAGGG  393

seq1  TCTTTGTTGCATTCACCAGGCTTTACCTGGGCCAGAGCATCTGAGGACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGCATTCACCAGGCTTTACCTGGGCCAGAGCATCTGAGGACAG  443

seq1  AATGATAACAGTGAGTCTGGAGCTCAGATGCAGCCCCACATGTGTTCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACAGTGAGTCTGGAGCTCAGATGCAGCCCCACATGTGTTCATG  493

seq1  TGTGAATTCCTGGAACACTCACAGACAGGAGTCCACAGAAAGAGCAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCCTGGAACACTCACAGACAGGAGTCCACAGAAAGAGCAAGAA  543

seq1  CCACTGTGGTACTCATAGCAAAATTAACACTTCAAAAATATTTGCATTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGTACTCATAGCAAAATTAACACTTCAAAAATATTTGCATTGA  593

seq1  GAAGGAAGTGGAAATCAAGCAAATGTATTCTGAAACACAATCTGTTTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTGGAAATCAAGCAAATGTATTCTGAAACACAATCTGTTTCCC  643

seq1  AACCTGCAGGTACATGCATTTAATGGGAAGAAGGAATAGAGAAAATTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAGGTACATGCATTTAATGGGAAGAAGGAATAGAGAAAATTATC  693

seq1  ATGGACCATGATCCTAATGCATGGAGAATGTGTGTGCTTAGAAAGTTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCATGATCCTAATGCATGGAGAATGTGTGTGCTTAGAAAGTTTTA  743

seq1  CCTCTCCCTGTGTAGCTTTCATCCAGGATGTTCTTATTCCTGCAAAGGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTGTGTAGCTTTCATCCAGGATGTTCTTATTCCTGCAAAGGCA  793

seq1  TGCTAGCTAAGCTTTACAGTAGTTGATATTTTCACTAATGAAGGAGATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTAAGCTTTACAGTAGTTGATATTTTCACTAATGAAGGAGATAT  843

seq1  TTGTAATATTGTCCCAGAAATGGGGGAAACAAATAGCACTATGTAGGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATTGTCCCAGAAATGGGGGAAACAAATAGCACTATGTAGGAAT  893

seq1  ATGTGATTAAATATGTGTATTTAATTTTCTGAAGAATAGCAACTCATGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTAAATATGTGTATTTAATTTTCTGAAGAATAGCAACTCATGTT  943

seq1  AAAACAAAAATATGTACTACATGAATTCACATTATTCATATATATTGTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAATATGTACTACATGAATTCACATTATTCATATATATTGTAA  993

seq1  TCTAAATTCAAGTTAGCAAATTGGATGCACCTAATACTACAGCATAGAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTCAAGTTAGCAAATTGGATGCACCTAATACTACAGCATAGAAG  1043

seq1  GAGGAGGACCAATTGAATTCATCTCCTCTTTTCCATTACTAATAAGAATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACCAATTGAATTCATCTCCTCTTTTCCATTACTAATAAGAATC  1093

seq1  CATGTGAAGTCCTGTGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAGTCCTGTGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTA  1143

seq1  TTAGTGAATTC  1157
      |||||||||||
seq2  TTAGTGAATTC  1154

seq1: chr12_116629899_116630431
seq2: B6Ng01-156J23.g_67_600

seq1  GAATTCCAAAAACACAAACAAAATTTTGGATATGTTGGCATTTGATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAACACAAACAAAATTTTGGATATGTTGGCATTTGATAATT  50

seq1  GGTGATGAAAACATGTTCACTTTTTCTTTGGAAAATTCTAGGTGTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAAAACATGTTCACTTTTTCTTTGGAAAATTCTAGGTGTTGCTT  100

seq1  ATTACTAGAGAATGAAATATATATGTGTTTGTGTGTGTGTGTGTCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAGAGAATGAAATATATATGTGTTTGTGTGTGTGTGTGTCTGTCT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAGCATTGATTGGACTCTCTATATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAGCATTGATTGGACTCTCTATATTGT  200

seq1  TAGTTAATGAAATAAAAGTGTTCAGTTAGTCCAAAAGATTAATTGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATGAAATAAAAGTGTTCAGTTAGTCCAAAAGATTAATTGGAAAT  250

seq1  TTCCCAAGAAAATCAGAAAGCTATAGTGGGGTATATATGATCCTGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGAAAATCAGAAAGCTATAGTGGGGTATATATGATCCTGATATA  300

seq1  TTTCATATATAAATAAAAATATAAAAGAATAAGCAAAATCATTCTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATATAAATAAAAATATAAAAGAATAAGCAAAATCATTCTGATAA  350

seq1  AGGAATAATTTTACATGTGATTAGAATTTTCATGGAAATAAATATTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATTTTACATGTGATTAGAATTTTCATGGAAATAAATATTTCAC  400

seq1  ACTGTGCAAAATTTACCCATAATTTCTGCTCTTTCATTTCTTGACTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAAAATTTACCCATAATTTCTGCTCTTTCATTTCTTGACTGTCC  450

seq1  CATTTTTTCTATTATGCTAAACACTCTTGTTTATACACTATAATGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCTATTATGCTAAACACTCTTGTTTATACACTATAATGCACTG  500

seq1  AAATACATAA-TTGTATATAAGAATGTAATATTG  533
      |||||||||| |||||||||||||||||||||||
seq2  AAATACATAATTTGTATATAAGAATGTAATATTG  534