BAC Information

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BAC

Clone NameB6Ng01-158K04
Chromosome12 (Build37)
Map Location 107,398,101 - 107,571,367
singlet/doubletdoublet
Overlap geneLOC100040404, LOC100040420
Upstream geneTcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386
Downstream gene1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158K04.bB6Ng01-158K04.g
ACCDH952531DH952532
length1,12953
definitionDH952531|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K04, 5' end.DH952532|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,398,101 - 107,399,244)(107,571,315 - 107,571,367)
sequence
gaattcaccacaagaagagggccaggagaataagggccccaaggtggaaa
aagaagatggtcgcctgaggttgggcaggaggaggagtcaccaagggagt
tctgcatgaggacggacagctacaacagagccagccaagaagagactgaa
tacaagtaacttggggtgtgtgctgcgaagtagctagatagtatggagag
ttaggactatctgctcagttattgtgcttaaagcttgttgcctaagtctc
taggtctctgcctcaattatttgggagctgcctgggttagcaaaagctgc
cgcctttaaaatcatcctacaggagtgtgaagcagtaggccacgtggcac
ccacagtcaggaaacaggaatagttcttgcctcagtttctcttctttgag
tctttccactttaattaacggaatctagaaaattcctcttaggcatgccc
agagacttgtctcaaggtgtttccatattctgtccagttaacaattatac
aaactgtcacgatgaccacccacgaatgagaaggtaggaatgggggccag
gagtgcagtttctaggcacctgaaggcaagcagaggacttgggagtagag
gagatgcctcacgccaagacaaggacagagtgcttgctggttatgtctgc
cctagtaagcccaaggcagctgtggaccaagtccttttaggtctggagtg
taccaggctcaccatggctcagagtgaactccctgccccaggcaggagct
gggaggatgtctgactcaccgtcccctttcctccttcgtaccagttcctc
ccaacagcttcttgagctggagaaagcttgtatctaagtcacctatccag
tcaagagcatccattggcttcatccctacgctaaatcatcacacagatca
ctgagggactgctcacaggcctgacttcagagccttcactctctgactct
tgcctcccttttcccttctgtggtacccaatctgcagcatgcctgccttc
tatttatgtacagttgttgcagaatggagaaaaacttgaaagctggagca
tcaaaagtccagacagcagcttctttaatcctcttttactcctaagatca
acatcacttacttctaaaagagtaacaac
caaagcaggtccaacagcagacggatgaagggcgcggggtgggggggggg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107398101_107399244
seq2: B6Ng01-158K04.b_47_1165

seq1  CAAGAAGAGGGCCAGGAGAAGAAGGGCCCCAAGGTGGAAAAAGAAGATGG  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGAAGAGGGCCAGGAGAATAAGGGCCCCAAGGTGGAAAAAGAAGATGG  50

seq1  TCGCCTGAGGTTGGGCAGGAGGAGGAGTCACCAAGGGAGTTCTGCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGAGGTTGGGCAGGAGGAGGAGTCACCAAGGGAGTTCTGCATGAG  100

seq1  GACGGACAGCTACAACAGAGCCAGCCAAGAAGAGACTGAATACAAGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGACAGCTACAACAGAGCCAGCCAAGAAGAGACTGAATACAAGTAAC  150

seq1  TTGGGGTGTGTGCTGCGAAGTAGCTAGATAGTATGGAGAGTTAGGACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGTGTGCTGCGAAGTAGCTAGATAGTATGGAGAGTTAGGACTAT  200

seq1  CTGCTCAGTTATTGTGCTTAAAGCTTGTTGCCTAAGTCTCTAGGTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTATTGTGCTTAAAGCTTGTTGCCTAAGTCTCTAGGTCTCTG  250

seq1  CCTCAATTATTTGGGAGCTGCCTGGGTTAGCAAAAGCTGCCGCCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTATTTGGGAGCTGCCTGGGTTAGCAAAAGCTGCCGCCTTTAAA  300

seq1  ATCATCCTACAGGAGTGTGAAGCAGTAGGCCACGTGGCACCCACAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTACAGGAGTGTGAAGCAGTAGGCCACGTGGCACCCACAGTCAG  350

seq1  GAAACAGGAATAGTTCTTGCCTCAGTTTCTCTTCTTTGAGTCTTTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGAATAGTTCTTGCCTCAGTTTCTCTTCTTTGAGTCTTTCCACT  400

seq1  TTAATTAACGGAATCTAGAAAATTCCTCTTAGGCATGCCCAGAGACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAACGGAATCTAGAAAATTCCTCTTAGGCATGCCCAGAGACTTGT  450

seq1  CTCAAGGTGTTTCCATATTCTGTCCAGTTAACAATTATACAAACTGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTGTTTCCATATTCTGTCCAGTTAACAATTATACAAACTGTCAC  500

seq1  GATGACCACCCACGAATGAGAAGGTAGGAATGGGGGCCAGGAGTGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCACCCACGAATGAGAAGGTAGGAATGGGGGCCAGGAGTGCAGTT  550

seq1  TCTAGGCACCTGAAGGCAAGCAGAGGACTTGGGAGTAGAGGAGATGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCACCTGAAGGCAAGCAGAGGACTTGGGAGTAGAGGAGATGCCTC  600

seq1  ACGCCAAGACAAGGACAGAGTGCTTGCTGGTTATGTCTGCCCTAGTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAAGACAAGGACAGAGTGCTTGCTGGTTATGTCTGCCCTAGTAAGC  650

seq1  CCAAGGCAGCTGTGGACCAAGTCCTTTTAGGTCTGGAGTGTACCAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAGCTGTGGACCAAGTCCTTTTAGGTCTGGAGTGTACCAGGCTC  700

seq1  ACCATGGCTCAGAGTGAACTCCCTGCCCCAGGCAGGAGCTGGGAGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCTCAGAGTGAACTCCCTGCCCCAGGCAGGAGCTGGGAGGATGT  750

seq1  CTGACTCACCGTCCCCTTTCCTCCTTCGTACCAGTTCCTCCCAACAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCACCGTCCCCTTTCCTCCTTCGTACCAGTTCCTCCCAACAGCTT  800

seq1  CTTGAGCTGGAGAAAGCTTGTATCTAAGGTCACCTATCCAGTCAAGAGCA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTGAGCTGGAGAAAGCTTGTATCTAA-GTCACCTATCCAGTCAAGAGCA  849

seq1  TCCATTGGCTTCACCCCCCACGCTAAATCATCACACAGACCACTGAGGGA  900
      |||||||||||||  ||| |||||||||||||||||||| ||||||||||
seq2  TCCATTGGCTTCA-TCCCTACGCTAAATCATCACACAGATCACTGAGGGA  898

seq1  CTGGCCCACAGGCCTGACCTCCAGAAGCCTCCACTCTCTGACTCTTGCCT  950
      || || ||||||||||| || ||| ||||| |||||||||||||||||||
seq2  CT-GCTCACAGGCCTGA-CTTCAG-AGCCTTCACTCTCTGACTCTTGCCT  945

seq1  CCCTTTTCCCTTCTGTGGGTACCCCAATTCTTGCAAGCATGCCTTGCCTC  1000
      |||||||||||||||| |||| ||||||   ||| |||||||| ||||| 
seq2  CCCTTTTCCCTTCTGT-GGTA-CCCAAT--CTGC-AGCATGCC-TGCCTT  989

seq1  CTATTTTATGTACAGTTTGTTGCAGAATGGGAGAAAAACTTGAGAGGCCT  1050
      ||| ||||||||||| |||||||||||| |||||||||||||| ||  ||
seq2  CTA-TTTATGTACAG-TTGTTGCAGAAT-GGAGAAAAACTTGAAAG--CT  1034

seq1  GGAGCATCAAAAGGCCCAGGACAGCAGCTTCTTCTATCCCCCCTTAACAT  1100
      ||||||||||||| ||   ||||||||||||||  |||| |  |||   |
seq2  GGAGCATCAAAAGTCC--AGACAGCAGCTTCTTTAATCCTCTTTTA--CT  1080

seq1  CACTAAGAGCAAACATCACTTAACATCAAAAAGAGGTAAACAAC  1144
      | |||||| | |||||||||| || || |||||||   ||||||
seq2  C-CTAAGATC-AACATCACTT-ACTTCTAAAAGAG--TAACAAC  1119

seq1: chr12_107571315_107571367
seq2: B6Ng01-158K04.g_73_125 (reverse)

seq1  CCCCCCCCCCCCCACCCCGCGCCCTTCATCCGTCTGCTGTTGGACCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCACCCCGCGCCCTTCATCCGTCTGCTGTTGGACCTGCT  50

seq1  TTG  53
      |||
seq2  TTG  53