BAC Information

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BAC

Clone NameB6Ng01-160B03
Chromosome12 (Build37)
Map Location 35,069,667 - 35,070,741
singlet/doubletsinglet
Overlap geneHdac9
Upstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B03.g
ACCDH953546
length1,054
definitionDH953546|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacaggagaaaactcactccggaagatttatcattctcttc
acaagcatgaacactatttccacagaaagatgcttaaccatgcagaaatc
acatcttatatcatctctttgtgtgttttcgacagctttaacagatagaa
attatgaatttttatccccagtgtatgtatatttagactatggcactcag
tgttttgacaaccttaaggaacaaacaaacaaataaacaaagactttctt
tatcctagaaccacttggttttaccttgtttcacctgggttttgtttctc
ctgttaggagtcaaaagaattgtcaaaattttcacaaaattataaaagag
ctgccacaaccaccaaaaaaatagtagaatatgaacaattttctcctgag
cccgccttataggctgtcagtctcccccaccctacccctcacccccagga
caataaaacagtgatctagttaaaaacaaacacacaacagtcattttcca
catggaagagcttttagatatagtttaacaaaagtacacatatgcagtca
tgtcattgtgggcgtgttgttttcctgaatgcccttttcgttgaagagtt
gaggactcaactccatgttgaggcatcagatctctgacatcccctgccct
ccaacccacagaagcaacattttgttgtagttttaataaaatatcattga
cttgtgcccaagagtttctgatttaactgaaaattatcatatattctcta
acatttgccttttaaatattcatcccatgaaatctatgtcatctgaagtt
taatatatatttgaactcacatgcctttcccattatactaagcagaccac
cactgaattctcactttgggtagacacttccttaaagccaatcttcctca
tccagtgtcttccaaggaggagagagggcgactcacatagtatactttgt
actgacatcagacaaagctgagagatgaaattgactttttaagaataaca
ttgaaattgatagtactctttgatattttgtgtcagaactttcttctctt
cttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35069667_35070741
seq2: B6Ng01-160B03.g_67_1120 (reverse)

seq1  AAAGAAAGAAAGAAAAGGTTCTAGACACAAAATAATCAAAGGAGGTAACT  50
      ||||||   ||||||  ||||| |||||||||| |||||| |||   |||
seq2  AAAGAAGAGAAGAAA--GTTCT-GACACAAAAT-ATCAAA-GAG--TACT  43

seq1  AATCAAATCTCAAATGTTATTTCCTTTAAAAAGTTCAATTTCCATCCTCT  100
       ||| ||| || |||||||||    |||||||| ||||||| ||| ||||
seq2  -ATC-AATTTC-AATGTTATT---CTTAAAAAG-TCAATTT-CAT-CTCT  84

seq1  CAGCCTTTGTTCTGATGTTCAGTACAAAGTATTACTATGTGAGTCGCCCT  150
      ||| ||||| ||||||| ||||||||||||| ||||||||||||||||||
seq2  CAG-CTTTG-TCTGATG-TCAGTACAAAGTA-TACTATGTGAGTCGCCCT  130

seq1  CTCTTCCTCCTTGGAAGACACTGGATGAGGAAGATTGGCTTTAAGGAAGT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-TCCTCCTTGGAAGACACTGGATGAGGAAGATTGGCTTTAAGGAAGT  179

seq1  GTCTACCCAAAGTGAGAATTCAGTGGTGGTCTGCTTAGTATAATGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCCAAAGTGAGAATTCAGTGGTGGTCTGCTTAGTATAATGGGAAA  229

seq1  GGCATGTGAGTTCAAATATATATTAAACTTCAGATGACATAGATTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGAGTTCAAATATATATTAAACTTCAGATGACATAGATTTCATG  279

seq1  GGATGAATATTTAAAAGGCAAATGTTAGAGAATATATGATAATTTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATATTTAAAAGGCAAATGTTAGAGAATATATGATAATTTTCAGT  329

seq1  TAAATCAGAAACTCTTGGGCACAAGTCAATGATATTTTATTAAAACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGAAACTCTTGGGCACAAGTCAATGATATTTTATTAAAACTACA  379

seq1  ACAAAATGTTGCTTCTGTGGGTTGGAGGGCAGGGGATGTCAGAGATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTTGCTTCTGTGGGTTGGAGGGCAGGGGATGTCAGAGATCTGA  429

seq1  TGCCTCAACATGGAGTTGAGTCCTCAACTCTTCAACGAAAAGGGCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAACATGGAGTTGAGTCCTCAACTCTTCAACGAAAAGGGCATTCA  479

seq1  GGAAAACAACACGCCCACAATGACATGACTGCATATGTGTACTTTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAACACGCCCACAATGACATGACTGCATATGTGTACTTTTGTTA  529

seq1  AACTATATCTAAAAGCTCTTCCATGTGGAAAATGACTGTTGTGTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATCTAAAAGCTCTTCCATGTGGAAAATGACTGTTGTGTGTTTGT  579

seq1  TTTTAACTAGATCACTGTTTTATTGTCCTGGGGGTGAGGGGTAGGGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTAGATCACTGTTTTATTGTCCTGGGGGTGAGGGGTAGGGTGGG  629

seq1  GGAGACTGACAGCCTATAAGGCGGGCTCAGGAGAAAATTGTTCATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGACAGCCTATAAGGCGGGCTCAGGAGAAAATTGTTCATATTCT  679

seq1  ACTATTTTTTTGGTGGTTGTGGCAGCTCTTTTATAATTTTGTGAAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTTTGGTGGTTGTGGCAGCTCTTTTATAATTTTGTGAAAATTT  729

seq1  TGACAATTCTTTTGACTCCTAACAGGAGAAACAAAACCCAGGTGAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTCTTTTGACTCCTAACAGGAGAAACAAAACCCAGGTGAAACAA  779

seq1  GGTAAAACCAAGTGGTTCTAGGATAAAGAAAGTCTTTGTTTATTTGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACCAAGTGGTTCTAGGATAAAGAAAGTCTTTGTTTATTTGTTTG  829

seq1  TTTGTTCCTTAAGGTTGTCAAAACACTGAGTGCCATAGTCTAAATATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTAAGGTTGTCAAAACACTGAGTGCCATAGTCTAAATATACA  879

seq1  TACACTGGGGATAAAAATTCATAATTTCTATCTGTTAAAGCTGTCGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGGATAAAAATTCATAATTTCTATCTGTTAAAGCTGTCGAAAA  929

seq1  CACACAAAGAGATGATATAAGATGTGATTTCTGCATGGTTAAGCATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGAGATGATATAAGATGTGATTTCTGCATGGTTAAGCATCTTT  979

seq1  CTGTGGAAATAGTGTTCATGCTTGTGAAGAGAATGATAAATCTTCCGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAATAGTGTTCATGCTTGTGAAGAGAATGATAAATCTTCCGGAG  1029

seq1  TGAGTTTTCTCCTGTCCTGGAATTC  1075
      |||||||||||||||||||||||||
seq2  TGAGTTTTCTCCTGTCCTGGAATTC  1054