BAC Information

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BAC

Clone NameB6Ng01-160D19
Chromosome12 (Build37)
Map Location 48,491,694 - 48,619,125
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D19.bB6Ng01-160D19.g
ACCDH953668DH953669
length943144
definitionDH953668|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D19, 5' end.DH953669|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,618,596 - 48,619,125)(48,491,694 - 48,491,894)
sequence
gaattctacatgagtaggcatattttagttaataagcaaatttttatttg
gaatgctataataagaagttataacaggagaaactttcaatggttttaca
attagaaatatgaattttgatataaggattgtgataatatgctatatatg
acatggcaaacatgaacaatgaaatgcaaagaaattaaatattaaaattt
tgcaatgtcaattcatgagagattttccattcatcagacctggacaaaga
ctattagattttacttaataagaaaatggctgaagtcaagaggagtctgt
gaactgagcacatagattagttctgtctatctaaatatagatagaactaa
aagctaagacaagtgatcaaagatccagaacaaaacaataaccaagacaa
cagtaaatatggaagtaattctcttcccaataaaactagatttcttcaat
aaacagtgctggtctaactggctgtttgtatttagaaaaatgaaaataga
tccatatttgtcaccttgaaaaaaaaggaaagaaaaaagaaaaaaaaacc
aaaacaaacaaaaaaatcaagttcaagtggatcaaggacctcaacataaa
accaggtacactgaatataatcaaagagaaagtgagaaagagctttgaac
tcattggcacaggaggaaatgccctaaactgctaatgctctaagatcaaa
cactgattaatgagaattcatgaaactggaaagcttctgtatggaaaagg
acatcatcaattagacaatttggcaacctaaagattgagaaaaaaatctt
cactaaccccacatctgatagagggataatatccaaaatatgtaaagaac
tgaagaagctaaccaccaaaacaaccccaaacaatccaacaaaaacaggg
tacagaactatactgggaattgacacagaggatcagatggctg
caaccagacccaccctgcaggaaccatgaactcctcttcctcttcctctt
cctcctcctccacctcctcctccaccaccaccttcttcttcttctggtga
tggagaagaataaaaagaattagaagatgaagctgctcattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48618596_48619125
seq2: B6Ng01-160D19.b_46_575 (reverse)

seq1  TTCCTTTTTTTTCAAGGTGACAAATATGGATCTATTTTCATTTTTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTTCAAGGTGACAAATATGGATCTATTTTCATTTTTCTAAA  50

seq1  TACAAACAGCCAGTTAGACCAGCACTGTTTATTGAAGAAATCTAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGCCAGTTAGACCAGCACTGTTTATTGAAGAAATCTAGTTTTA  100

seq1  TTGGGAAGAGAATTACTTCCATATTTACTGTTGTCTTGGTTATTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAGAATTACTTCCATATTTACTGTTGTCTTGGTTATTGTTTTG  150

seq1  TTCTGGATCTTTGATCACTTGTCTTAGCTTTTAGTTCTATCTATATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATCTTTGATCACTTGTCTTAGCTTTTAGTTCTATCTATATTTAG  200

seq1  ATAGACAGAACTAATCTATGTGCTCAGTTCACAGACTCCTCTTGACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGAACTAATCTATGTGCTCAGTTCACAGACTCCTCTTGACTTCA  250

seq1  GCCATTTTCTTATTAAGTAAAATCTAATAGTCTTTGTCCAGGTCTGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTCTTATTAAGTAAAATCTAATAGTCTTTGTCCAGGTCTGATGA  300

seq1  ATGGAAAATCTCTCATGAATTGACATTGCAAAATTTTAATATTTAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATCTCTCATGAATTGACATTGCAAAATTTTAATATTTAATTTC  350

seq1  TTTGCATTTCATTGTTCATGTTTGCCATGTCATATATAGCATATTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCATTGTTCATGTTTGCCATGTCATATATAGCATATTATCAC  400

seq1  AATCCTTATATCAAAATTCATATTTCTAATTGTAAAACCATTGAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTATATCAAAATTCATATTTCTAATTGTAAAACCATTGAAAGTTT  450

seq1  CTCCTGTTATAACTTCTTATTATAGCATTCCAAATAAAAATTTGCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTATAACTTCTTATTATAGCATTCCAAATAAAAATTTGCTTATT  500

seq1  AACTAAAATATGCCTACTCATGTAGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  AACTAAAATATGCCTACTCATGTAGAATTC  530

seq1: chr12_48491694_48491894
seq2: B6Ng01-160D19.g_73_216

seq1  CAACCAGACCCACCCTGCAGGAACCATGAACTCCTCTTCCTCTTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGACCCACCCTGCAGGAACCATGAACTCCTCTTCCTCTTCCTCTT  50

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCT  100
      ||||||||||| ||||||||||| || || ||| || || |||||     
seq2  CCTCCTCCTCCACCTCCTCCTCCACCACCACCTTCTTCTTCTTCT-----  95

seq1  GCCTACTCCTCCTCCTCCTCCTCCTCCTCAACTAACATTGATGGCTTGAA  150
                                                        
seq2  --------------------------------------------------  95

seq1  AAGGAGACTGGAG-AGAATAAAGAGCAGTCGCAGATGAAGCTGCCCATTC  199
        || || ||||| |||||||| || | | | |||||||||||| |||||
seq2  --GGTGA-TGGAGAAGAATAAAAAGAATTAGAAGATGAAGCTGCTCATTC  142

seq1  TG  201
      ||
seq2  TG  144