BAC Information

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BAC

Clone NameB6Ng01-162B09
Chromosome12 (Build37)
Map Location 28,228,129 - 28,336,889
singlet/doubletdoublet
Overlap geneLOC100043009
Upstream gene1700020D12Rik, Sox11
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B09.bB6Ng01-162B09.g
ACCDH955014DH955015
length1,175936
definitionDH955014|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B09, 5' end.DH955015|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,228,129 - 28,229,305)(28,335,954 - 28,336,889)
sequence
gaattccagacaaaacaagacaatgccctttttttcttaaggcactgtca
ggacatcctgtcacaacaacagaaacatctatactgtgcccaaatattga
gtgtacccatttgttccacatgtaccttgtgtgctcatttttgtttgcat
gcaaacacacattcagccaaagtgagcagtacactagtagaggccaaggc
tgttgtcagaagacatccctttggggactgaagtctgtgtttgatcccta
tatctgaatatcaattactgtctcataggaaacccaatgagtcattcttg
tctcccataaactccacaaccacccttcacgcttctttcatttcatttct
tagtaacccctcaaaatggacattttatagagactgggattaaagaaaat
aaaaatatactggtaggaaggttcaacctcatttcatagatagtaggaag
agggaaacaactgagttttgttttgttttgttttttgtttatctttttgt
aaatcaatagttcatctttatcttaagagcaaagtttcttgtactcctct
ttagttgggcatttaatgataatattgtgaatttagaaggaaaggacttt
tatctagcttaggtttggagggggagcatcaaagtagcctggctttagtt
ctgactgtggtccccttgctgtttcaaaagaagggctggcattgctgtgt
gggctgtgtgtgcattgtgtgcgagatcaacagcaatataggaagctgaa
gttcagatgatggaatgatgtgcttgctgcctcctgcctcttaaggtccc
tttacttctctctctttttaaaaaaaattaattttatttgtaattcattt
tttacatcccatattccattccccacccctcctctttcaccctccgacga
ctgttccaaatctcacgcctcctccccatcctaccccatctccatgtgga
tcctcccatgactccaccccacctgacctctaactccctggacctccagt
ctcttgagggttagtgcatcatctcttgaatgaacaagacccggagtgtt
ctactgttgtgttgttgggggcctatatcagctggtgtattgctgtctgt
tggtggtccagtgtttgagagatcctcagagtccctgattaattaagatt
tcctagtcctcaaccaagatcgccc
gaattcaagggcgatctggaagtcatggaatatttcacctggacaaaggg
taaggggagcaaggacattgctgcagccaagttccgcaccagaaaaccac
gtgaccttggaaagaagtcagaagccacggcaaaaaagaagaaactcaga
aatagaagatgcaaccattcaggctaaaagtctgaaatctgttgtgtatg
aaagtgtattacagtgggaaaacatatacatataataagataaagataat
tatgggaagctgggtatagggctcagtgttattgtgcttgccaggccagt
gtgaggtcctgagtcaaaattcaggtctgagttctgactccatgatcagg
tccatgacttggagatgccagcttcttccacatgtggcctgtgtctttca
agggttttgtcattaactaccatcaagggcaattctacagatcctatgat
gtatgtacctatcactgacagaaatcactagtaatttggacatgtgaggg
ttgggtcaagagtaaacatacaaatacactctactcgtgtccacatacac
acccacatttaaaattaacagggttgatccaaatggagaagaaaaatggg
catcccagacctggctgcatttctataaaatcttgcttataatttattct
tttgatctttcacacatatgtgtacttcgatgatatccatctctgtcatc
ctctcttaacctgggaacccttcctcttcccagcagttcttcttactttt
atgtctatgacttcagtgtgttagtgtgtgacattacagatacacttgat
gacttttgttgactttctaaacccacataacttccagagtaccccgctca
catgtgacagtgggagcatggtccaacttctatattttaccatcactggc
tctaagctgggccatggagatggaggagagggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28228129_28229305
seq2: B6Ng01-162B09.b_47_1221

seq1  GAATTCCAGACAAAACAAGACAATGCCCTTTTTTTCTTAAGGCACTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAAACAAGACAATGCCCTTTTTTTCTTAAGGCACTGTCA  50

seq1  GGACATCCTGTCACAACAACAGAAACATCTATACTGTGCCCAAATATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCTGTCACAACAACAGAAACATCTATACTGTGCCCAAATATTGA  100

seq1  GTGTACCCATTTGTTCCACATGTACCTTGTGTGCTCATTTTTGTTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCCATTTGTTCCACATGTACCTTGTGTGCTCATTTTTGTTTGCAT  150

seq1  GCAAACACACATTCAGCCAAAGTGAGCAGTACACTAGTAGAGGCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACACATTCAGCCAAAGTGAGCAGTACACTAGTAGAGGCCAAGGC  200

seq1  TGTTGTCAGAAGACATCCCTTTGGGGACTGAAGTCTGTGTTTGATCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGAAGACATCCCTTTGGGGACTGAAGTCTGTGTTTGATCCCTA  250

seq1  TATCTGAATATCAATTACTGTCTCATAGGAAACCCAATGAGTCATTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATATCAATTACTGTCTCATAGGAAACCCAATGAGTCATTCTTG  300

seq1  TCTCCCATAAACTCCACAACCACCCTTCACGCTTCTTTCATTTCATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATAAACTCCACAACCACCCTTCACGCTTCTTTCATTTCATTTCT  350

seq1  TAGTAACCCCTCAAAATGGACATTTTATAGAGACTGGGATTAAAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCCCTCAAAATGGACATTTTATAGAGACTGGGATTAAAGAAAAT  400

seq1  AAAAATATACTGGTAGGAAGGTTCAACCTCATTTCATAGATAGTAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACTGGTAGGAAGGTTCAACCTCATTTCATAGATAGTAGGAAG  450

seq1  AGGGAAACAACTGAGTTTTGTTTTGTTTTGTTTTTTGTTTATCTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAACTGAGTTTTGTTTTGTTTTGTTTTTTGTTTATCTTTTTGT  500

seq1  AAATCAATAGTTCATCTTTATCTTAAGAGCAAAGTTTCTTGTACTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATAGTTCATCTTTATCTTAAGAGCAAAGTTTCTTGTACTCCTCT  550

seq1  TTAGTTGGGCATTTAATGATAATATTGTGAATTTAGAAGGAAAGGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGGCATTTAATGATAATATTGTGAATTTAGAAGGAAAGGACTTT  600

seq1  TATCTAGCTTAGGTTTGGAGGGGGAGCATCAAAGTAGCCTGGCTTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGCTTAGGTTTGGAGGGGGAGCATCAAAGTAGCCTGGCTTTAGTT  650

seq1  CTGACTGTGGTCCCCTTGCTGTTTCAAAAGAAGGGCTGGCATTGCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGGTCCCCTTGCTGTTTCAAAAGAAGGGCTGGCATTGCTGTGT  700

seq1  GGGCTGTGTGTGCATTGTGTGCGAGATCAACAGCAATATAGGAAGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTGTGCATTGTGTGCGAGATCAACAGCAATATAGGAAGCTGAA  750

seq1  GTTCAGATGATGGAATGATGTGCTTGCTGCCTCCTGCCTCTTAAGGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATGATGGAATGATGTGCTTGCTGCCTCCTGCCTCTTAAGGTCCC  800

seq1  TTTACTTCTCTCTCTTTTTAAAAAAAATTAATTTTATTTGTAATTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTCTCTCTTTTTAAAAAAAATTAATTTTATTTGTAATTCATTT  850

seq1  TTTACATCCCATATTCCATTCCCCACCCCTCCTCTTTCACCCTCCGACGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCCATATTCCATTCCCCACCCCTCCTCTTTCACCCTCCGACGA  900

seq1  CTGTTCCAAATCTCACGCCTCCTCCCCATCCTACCCCATCTCCATGTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAAATCTCACGCCTCCTCCCCATCCTACCCCATCTCCATGTGGA  950

seq1  TCCTCCCATGACTCCACCCCACCTGACCTCTAAACTCCCTGGACCTCCAG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTCCCATGACTCCACCCCACCTGACCTCT-AACTCCCTGGACCTCCAG  999

seq1  TCTCTTGAGGGTTAGGTGCATCATCTC-TGAATGAACACAGACCCGGAAG  1049
      |||||||||||||| |||||||||||| |||||||||| |||||||| ||
seq2  TCTCTTGAGGGTTA-GTGCATCATCTCTTGAATGAACA-AGACCCGG-AG  1046

seq1  TGTTCTACTGTATGTG-TGTTGGGGGCCTCATATCAGCTGGTGTA-TGCT  1097
      ||||||||||| |||| |||||||||||| ||||||||||||||| ||||
seq2  TGTTCTACTGT-TGTGTTGTTGGGGGCCT-ATATCAGCTGGTGTATTGCT  1094

seq1  GTCTGTTTGGTGGTCCAGTGTTTGAGAGAT-CTCAGAGGTCCTGATTAAT  1146
      ||||| |||||||||||||||||||||||| |||||||  ||||||||||
seq2  GTCTG-TTGGTGGTCCAGTGTTTGAGAGATCCTCAGAGTCCCTGATTAAT  1143

seq1  TAAGATTT-CTAGTCCTCACACAGGATCGCCC  1177
      |||||||| ||||||||||  || ||||||||
seq2  TAAGATTTCCTAGTCCTCAACCAAGATCGCCC  1175

seq1: chr12_28335954_28336889
seq2: B6Ng01-162B09.g_69_1004 (reverse)

seq1  TCCACCCTCTCCTCCATCTCCATGGCCCAGCTTAGAGCCAGTGATGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTCTCCTCCATCTCCATGGCCCAGCTTAGAGCCAGTGATGGTAA  50

seq1  AATATAGAAGTTGGACCATGCTCCCACTGTCACATGTGAGCGGGGTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAAGTTGGACCATGCTCCCACTGTCACATGTGAGCGGGGTACTC  100

seq1  TGGAAGTTATGTGGGTTTAGAAAGTCAACAAAAGTCATCAAGTGTATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTATGTGGGTTTAGAAAGTCAACAAAAGTCATCAAGTGTATCTG  150

seq1  TAATGTCACACACTAACACACTGAAGTCATAGACATAAAAGTAAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCACACACTAACACACTGAAGTCATAGACATAAAAGTAAGAAGAA  200

seq1  CTGCTGGGAAGAGGAAGGGTTCCCAGGTTAAGAGAGGATGACAGAGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAAGAGGAAGGGTTCCCAGGTTAAGAGAGGATGACAGAGATGG  250

seq1  ATATCATCGAAGTACACATATGTGTGAAAGATCAAAAGAATAAATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCGAAGTACACATATGTGTGAAAGATCAAAAGAATAAATTATAA  300

seq1  GCAAGATTTTATAGAAATGCAGCCAGGTCTGGGATGCCCATTTTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTATAGAAATGCAGCCAGGTCTGGGATGCCCATTTTTCTTCT  350

seq1  CCATTTGGATCAACCCTGTTAATTTTAAATGTGGGTGTGTATGTGGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGATCAACCCTGTTAATTTTAAATGTGGGTGTGTATGTGGACAC  400

seq1  GAGTAGAGTGTATTTGTATGTTTACTCTTGACCCAACCCTCACATGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGTGTATTTGTATGTTTACTCTTGACCCAACCCTCACATGTCCA  450

seq1  AATTACTAGTGATTTCTGTCAGTGATAGGTACATACATCATAGGATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAGTGATTTCTGTCAGTGATAGGTACATACATCATAGGATCTGT  500

seq1  AGAATTGCCCTTGATGGTAGTTAATGACAAAACCCTTGAAAGACACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCCCTTGATGGTAGTTAATGACAAAACCCTTGAAAGACACAGGC  550

seq1  CACATGTGGAAGAAGCTGGCATCTCCAAGTCATGGACCTGATCATGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGAAGAAGCTGGCATCTCCAAGTCATGGACCTGATCATGGAGT  600

seq1  CAGAACTCAGACCTGAATTTTGACTCAGGACCTCACACTGGCCTGGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGACCTGAATTTTGACTCAGGACCTCACACTGGCCTGGCAAG  650

seq1  CACAATAACACTGAGCCCTATACCCAGCTTCCCATAATTATCTTTATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACACTGAGCCCTATACCCAGCTTCCCATAATTATCTTTATCTT  700

seq1  ATTATATGTATATGTTTTCCCACTGTAATACACTTTCATACACAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTATATGTTTTCCCACTGTAATACACTTTCATACACAACAGAT  750

seq1  TTCAGACTTTTAGCCTGAATGGTTGCATCTTCTATTTCTGAGTTTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTTTTAGCCTGAATGGTTGCATCTTCTATTTCTGAGTTTCTTCT  800

seq1  TTTTTGCCGTGGCTTCTGACTTCTTTCCAAGGTCACGTGGTTTTCTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCGTGGCTTCTGACTTCTTTCCAAGGTCACGTGGTTTTCTGGTG  850

seq1  CGGAACTTGGCTGCAGCAATGTCCTTGCTCCCCTTACCCTTTGTCCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTTGGCTGCAGCAATGTCCTTGCTCCCCTTACCCTTTGTCCAGGT  900

seq1  GAAATATTCCATGACTTCCAGAACGCCCTTGAATTC  936
      |||||||||||||||||||||| |||||||||||||
seq2  GAAATATTCCATGACTTCCAGATCGCCCTTGAATTC  936