BAC Information

Click to search

BAC

Clone NameB6Ng01-164O14
Chromosome12 (Build37)11 (Build37)
Map Location 6,979,861 - 6,980,968113,024,294 - 113,024,552
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O14.bB6Ng01-164O14.g
ACCDH957113DH957114
length1,095484
definitionDH957113|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O14, 5' end.DH957114|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,979,861 - 6,980,968)(113,024,294 - 113,024,552)
sequence
gaattcttacttactatatttcatctctgctgcaccagagccaatggaga
aggggcccttggggatgctcttccccgatttttacatggttgtatggttt
ctttcctgcagcagctctcaggtttgctctgtctgcttcccttgtcatgg
tgattctaaaaccccctccttcacatggttccctttcaagggaaatctaa
aatccacctctgtctcccttgccagccaatggccaccagcaactttattt
accaattaaaactaggtagggacagggacagtcaagaatctcacatggag
acttaggaattctcatgtaatttgggaacctgactggcataatgtaagca
atacaccaaatccacaacaaaaacagccattacatccatgtcaaccggaa
gggattggttttgtttggagcaatttcagtgatccctagttaacacagcg
ctggctttcagaacacctcactgaaacttcttaatttagtaaacactatg
gatcaaaaattttatttttgttattgagaaaaataaatttttattttaga
tttttttctctaaaagttagcaggtcagtcagggaaaaaaaaattaaata
tggagaaatatttaggcagaagctcctcgtggagtggcatcaggattaag
tatagcttgtataagcacctgagaaaggatgggctttcagacaggttttc
gaaggagataaatcttgaactctgtaagggaattaagtccacaagggttc
ctgtggactgagtatgggaaagcagtaggacctcgatgggagagaagagg
gagcagaagcccactctgcccagttcaaaggctgcagtcttgggagttat
ttaaaatgtaagtgagcaccatgaactgcgatgtgtatatttatggataa
acagcatgctcaagaagtgacacagagtggaagttaaagtatacacaatg
aatagtatatggatgaatgggaagaggtgactttcagcttgtatgacctt
ccctataagtcctacacacatgaccagataactagcattttgtctgccta
aggaacagtgaccagtctggctgttctggaattatttccaatttg
tattgtgcctttggccattcagtttctggataaaagacaaataactttta
tatttattataagctttaactagcactggagctgggcagatatctaccct
ctaccctattagaacctatttctccatcattaatcccattttataatttg
ccatgttccatctgggcagattttaactccaactgggcagccctcatggc
catatttttgattcacctaccccacagtggctttctcctccctcctccta
gtttcttcagatcccaagctagggaacccaagaacctacctctctcttct
gcatagctactggctgtaagtatattcactaatcagggataacttgccag
aggttaggggcaaagttacatagcatcacttgggtatgtcacttggatat
gtgcagattctcatctctggggcttttatttagcattaacaccaaacctc
agtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_6979861_6980968
seq2: B6Ng01-164O14.b_45_1139 (reverse)

seq1  CAAATTGGAAATAAATCACAGAACAGCCAGACTTGGTCAACTGTTCCTTA  50
      |||||||||||||| || |||||||||||||| ||||| |||||||||||
seq2  CAAATTGGAAATAATTC-CAGAACAGCCAGAC-TGGTC-ACTGTTCCTTA  47

seq1  TGTCAGATCATAGATGCTTAGTATCTGGTCATGTAGTGGTAAGGACCTAT  100
       | |||| || | |||||   ||||||||||||| |||   ||||| |||
seq2  -GGCAGA-CA-AAATGCTAGTTATCTGGTCATGT-GTG--TAGGACTTAT  91

seq1  AGGG-AGGTCATTACAAGCTGAAAAGTCCACCTCTTCCCATTCATCCATA  149
      |||| |||||| ||||||||| ||||| ||||||||||||||||||||||
seq2  AGGGAAGGTCA-TACAAGCTG-AAAGT-CACCTCTTCCCATTCATCCATA  138

seq1  TACTTATTCATTGTGTATACTTTAACTTCCACTCTGTGTCACTTCTTGAG  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAC-TATTCATTGTGTATACTTTAACTTCCACTCTGTGTCACTTCTTGAG  187

seq1  CATGCTGTTTATCCAATAAATATACACATCGCAGTTCATGGTGCTCACTT  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATGCTGTTTATCC-ATAAATATACACATCGCAGTTCATGGTGCTCACTT  236

seq1  ACATTTTAAATAACTCCCAAGACTGCAGCCTTTGAACTGGGCAGAGTGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAATAACTCCCAAGACTGCAGCCTTTGAACTGGGCAGAGTGGG  286

seq1  CTTCTGCTCCCTCTTCTCTCCCATCGAGGTCCTACTGCTTTCCCATACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCCCTCTTCTCTCCCATCGAGGTCCTACTGCTTTCCCATACTC  336

seq1  AGTCCACAGGAACCCTTGTGGACTTAATTCCCTTACAGAGTTCAAGATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACAGGAACCCTTGTGGACTTAATTCCCTTACAGAGTTCAAGATTT  386

seq1  ATCTCCTTCGAAAACCTGTCTGAAAGCCCATCCTTTCTCAGGTGCTTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCGAAAACCTGTCTGAAAGCCCATCCTTTCTCAGGTGCTTATA  436

seq1  CAAGCTATACTTAATCCTGATGCCACTCCACGAGGAGCTTCTGCCTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATACTTAATCCTGATGCCACTCCACGAGGAGCTTCTGCCTAAAT  486

seq1  ATTTCTCCATATTTAATTTTTTTTTCCCTGACTGACCTGCTAACTTTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCATATTTAATTTTTTTTTCCCTGACTGACCTGCTAACTTTTAG  536

seq1  AGAAAAAAATCTAAAATAAAAATTTATTTTTCTCAATAACAAAAATAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATCTAAAATAAAAATTTATTTTTCTCAATAACAAAAATAAAA  586

seq1  TTTTTGATCCATAGTGTTTACTAAATTAAGAAGTTTCAGTGAGGTGTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATCCATAGTGTTTACTAAATTAAGAAGTTTCAGTGAGGTGTTCT  636

seq1  GAAAGCCAGCGCTGTGTTAACTAGGGATCACTGAAATTGCTCCAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGCGCTGTGTTAACTAGGGATCACTGAAATTGCTCCAAACAAA  686

seq1  ACCAATCCCTTCCGGTTGACATGGATGTAATGGCTGTTTTTGTTGTGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCCTTCCGGTTGACATGGATGTAATGGCTGTTTTTGTTGTGGAT  736

seq1  TTGGTGTATTGCTTACATTATGCCAGTCAGGTTCCCAAATTACATGAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATTGCTTACATTATGCCAGTCAGGTTCCCAAATTACATGAGAA  786

seq1  TTCCTAAGTCTCCATGTGAGATTCTTGACTGTCCCTGTCCCTACCTAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGTCTCCATGTGAGATTCTTGACTGTCCCTGTCCCTACCTAGTT  836

seq1  TTAATTGGTAAATAAAGTTGCTGGTGGCCATTGGCTGGCAAGGGAGACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGTAAATAAAGTTGCTGGTGGCCATTGGCTGGCAAGGGAGACAG  886

seq1  AGGTGGATTTTAGATTTCCCTTGAAAGGGAACCATGTGAAGGAGGGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTTAGATTTCCCTTGAAAGGGAACCATGTGAAGGAGGGGGTT  936

seq1  TTAGAATCACCATGACAAGGGAAGCAGACAGAGCAAACCTGAGAGCTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCACCATGACAAGGGAAGCAGACAGAGCAAACCTGAGAGCTGCT  986

seq1  GCAGGAAAGAAACCATACAACCATGTAAAAATCGGGGAAGAGCATCCCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAGAAACCATACAACCATGTAAAAATCGGGGAAGAGCATCCCCA  1036

seq1  AGGGCCCCTTCTCCATTGGCTCTGGTGCAGCAGAGATGAAATATAGTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCTTCTCCATTGGCTCTGGTGCAGCAGAGATGAAATATAGTAAG  1086

seq1  TAAGAATTC  1108
      |||||||||
seq2  TAAGAATTC  1095

seq1: chr11_113024294_113024552
seq2: B6Ng01-164O14.g_302_559 (reverse)

seq1  CACACACACACACACACACACATGCAAACCACCCACAAAACATACATGTA  50
      ||||||||||||||||||||||| ||   ||| |||  |   |   ||| 
seq2  CACACACACACACACACACACATACA---CACACACTGAGGTTTGGTGT-  46

seq1  CCTGAAAATAATGGTATTCACTAG---CACAGGTAAGA-----CACA-GT  91
              ||||| ||   |  ||   || || | |||     ||||  |
seq2  --------TAATGCTAAATAAAAGCCCCAGAGATGAGAATCTGCACATAT  88

seq1  AGAACACACACACACACACAGAGCACATGTCACCTTGGCAGGGCATATAT  141
        ||   ||| || || |  ||    |||| || ||| |           
seq2  CCAAGTGACATACCCA-AGTGATGCTATGTAACTTTGCC-----------  126

seq1  CCCAAACT-----GAGGTTTCCTTGATGAATGCCCCTGAACTTCC-----  181
      || || ||      || | ||| |||| | ||    |  |||| |     
seq2  CCTAACCTCTGGCAAGTTATCCCTGATTAGTG--AATATACTTACAGCCA  174

seq1  ---TCTGTCCAAACCTCCAGGGTAGCTTCTCG---CACAGAGTCTGAG-T  224
          || | || |       ||||| |||| |     |  ||  || | |
seq2  GTAGCTATGCAGAAGAGAGAGGTAGGTTCTTGGGTTCCCTAGCTTGGGAT  224

seq1  GGGAAGAGCCACCCATGACCA--GAGGAGAAAGCCAC  259
        |||||   | | | ||  |  ||||||||||||||
seq2  CTGAAGA---AACTAGGAGGAGGGAGGAGAAAGCCAC  258