BAC Information

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BAC

Clone NameB6Ng01-167O06
Chromosome12 (Build37)
Map Location 47,477,966 - 47,671,435
singlet/doubletdoublet
Overlap geneLOC664952
Upstream genenone
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167O06.bB6Ng01-167O06.g
ACCDH959271DH959272
length1,2141,150
definitionDH959271|Mus musculus domesticus DNA, BAC clone: B6Ng01-167O06, 5' end.DH959272|Mus musculus domesticus DNA, BAC clone: B6Ng01-167O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,477,966 - 47,479,144)(47,670,266 - 47,671,435)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatatacagcaaacca
gtagccaacatcaaagtaaatggagagaaactccaagcaatcccactaaa
atcaggggctagacaaggctgcccactttctccctacctattcaatatag
tacttgaagttctagccagagcaattggacaacaaaaggagttcaagggg
atacagcttggaaaggaagaagtaaaaatatcactatttgcagatgatat
gatagtatatatataagtgaccctaaaaagtccaccagagaattcctaaa
cctgataaacagcttcagtgcagtagctggatataaaattaactcaaaca
aatcaatggcctttctctacacaaaggataaacgggctgagaaagaaatt
agggaaacaacacccttcacaatagtcacaaataatataaaatgcctagg
tgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagt
ctctgaagaaagaaattgaagaatatttcagaagatggaaagatctcaca
tgctcatggattggcaggattaatatagcattatatttcataagaaggat
atactcagcatagtctgctggaggaagtaactccatggagagcaaacact
gatctttctttttgctaaacactctgaatgtagttcacttggttataatt
atatgaaacaataatggaagatttgttacataagtagataaaattttgca
tatctgagtcaatgggtgagacatttttgattgcagaccaattcaacatt
gcttttcacactataatttgaacaaaatattccttatattttaaaaaaat
aaaaagggagttagcaagaaattaacttaaatttaatataagttaaattt
aaaacacaaattttaatttaaattaaatttgaagcaaatacatcttttac
tgtttaaatccttttcatgaaactcagtaatttaacttaaactacatggg
attctctttctttatctcagagatatttatacacacaacacacacacaca
cacacacaccacacactccataccgaggctcagcactgacaccagcacca
cccaactcattatgctaagtcattgctagtctttccattagaactctctt
agcatgctgacgtcaagagattcgttgtagtatgcttgttctggaaccaa
ttccatatccttag
gaattccctacccatttaaccctatctgcaaagatcccttgtcttgaaat
ataacttattttcaaattctgaagactaagccatagctttctgtgtttgt
ggggagaggactatgcttggtaccattagaaaaacaatatgaaagagaaa
aattacagatgtagaaaataaattataaagttcacccctgtgcaattaga
tgtgaaagtctactggaatggatgattccctaagaaaacacaaagtatta
atatctcagatcaggaagggcagaagaaaatgttctttgcccatacaaag
gagttaagaagtctcccaacaggtgcccatatccaagtgtcttcacaggt
ttccctcgctaaatatttaagaaataaggaatttcaatgtcaagtatatg
atccaataaaattaagaaacagttacactagctgcaacaaatgataacga
gcctgattctctacatccgtgttctcagtattttaaggaattggaggcag
gcttttgttagcatggacctaacttgttgagctagttgaaggcagttctc
tacacggcaacaatatcatgtccagggcaggcatgagagggctcatgaat
agattagcatggacatcagacatgtggatggccactgcagttgctgtcct
tctggggctgtggatatttcttgcccacctgactttaccacattaactgc
ttgcttcttgtgatctttccaaaggatttgaaatccagtttcctgtttcc
gatttcaatctacttgaaatacgtggaatagtttatattctttttattga
agtatgacagactgagttacttttgtgagccaactcaaattgatgacata
ctctgacaaaggaagcatgtgaaaaacaaaactaaagtaagaactagttt
tcatcaataattttaatgctaaattttaggaaaaatattaaacaaataca
acaaacaaaataagtgactaaattttaaaggaataaatcctgtgcactaa
ggttaattaaaaagtcattattattttatatttagaggaaacaggaagaa
acaggatgacttttaagagaggtgacatatcttcattacatgcacagaca
agttgaagcaattagaaacatggatgcctaatagaataactggttacaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47477966_47479144
seq2: B6Ng01-167O06.b_129_1263

seq1  ACTCCAAGCAATCCCACTAAAATCAGGGGCTAGACAAGGCTGCCCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGCAATCCCACTAAAATCAGGGGCTAGACAAGGCTGCCCACTTT  50

seq1  CTCCCTACCTATTCAATATAGTACTTGAAGTTCTAGCCAGAGCAATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACCTATTCAATATAGTACTTGAAGTTCTAGCCAGAGCAATTGGA  100

seq1  CAACAAAAGGAGTTCAAGGGGATACAGCTTGGAAAGGAAGAAGTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAGGAGTTCAAGGGGATACAGCTTGGAAAGGAAGAAGTAAAAAT  150

seq1  ATCACTATTTGCAGATGATATGATAGTATATATATAAGTGACCCTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATTTGCAGATGATATGATAGTATATATATAAGTGACCCTAAAAA  200

seq1  GTCCACCAGAGAATTCCTAAACCTGATAAACAGCTTCAGTGCAGTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCAGAGAATTCCTAAACCTGATAAACAGCTTCAGTGCAGTAGCTG  250

seq1  GATATAAAATTAACTCAAACAAATCAATGGCCTTTCTCTACACAAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAATTAACTCAAACAAATCAATGGCCTTTCTCTACACAAAGGAT  300

seq1  AAACGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCAC  350

seq1  AAATAATATAAAATGCCTAGGTGTGACTCTAACTAAGGAAGTGAAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAAAATGCCTAGGTGTGACTCTAACTAAGGAAGTGAAAGATC  400

seq1  TGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTGAAGAATATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTGAAGAATATTTC  450

seq1  AGAAGATGGAAAGATCTCACATGCTCATGGATTGGCAGGATTAATATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGAAAGATCTCACATGCTCATGGATTGGCAGGATTAATATAGC  500

seq1  ATTATATTTCATAAGAAGGATATACTCAGCATAGTCTGCTGGAGGAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTCATAAGAAGGATATACTCAGCATAGTCTGCTGGAGGAAGTA  550

seq1  ACTCCATGGAGAGCAAACACTGATCTTTCTTTTTGCTAAACACTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGAGAGCAAACACTGATCTTTCTTTTTGCTAAACACTCTGAAT  600

seq1  GTAGTTCACTTGGTTATAATTATATGAAACAATAATGGAAGATTTGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCACTTGGTTATAATTATATGAAACAATAATGGAAGATTTGTTAC  650

seq1  ATAAGTAGATAAAATTTTGCATATCTGAGTCAATGGGTGAGACATTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGATAAAATTTTGCATATCTGAGTCAATGGGTGAGACATTTTTG  700

seq1  ATTGCAGACCAATTCAACATTGCTTTTCACACTATAATTTGAACAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGACCAATTCAACATTGCTTTTCACACTATAATTTGAACAAAATA  750

seq1  TTCCTTATATTTTAAAAAAATAAAAAGGGAGTTAGCAAGAAATTAACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATATTTTAAAAAAATAAAAAGGGAGTTAGCAAGAAATTAACTTA  800

seq1  AATTAAATATAAGTTAAA-TTAAAACACAAATTTTAATTTAAATTAAATT  849
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTTAATATAAGTTAAATTTAAAACACAAATTTTAATTTAAATTAAATT  850

seq1  TGAAGCAAATACATCTTTTACTGTTTTAAATCCTTTTCATTGAAAACTCA  899
      ||||||||||||||||||||||| ||||||||||||||||   |||||||
seq2  TGAAGCAAATACATCTTTTACTG-TTTAAATCCTTTTCAT--GAAACTCA  897

seq1  GTAATTTAACTTAAACTACATGGGATTCTCTTTCCTTTATCTCCAGAGAT  949
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  GTAATTTAACTTAAACTACATGGGATTCTCTTT-CTTTATCT-CAGAGAT  945

seq1  ATTTAATACACACACACACACACACACACACACACACACACACACACACA  999
      |||| ||||||||| |||||||||||||||||||||| ||||||| | ||
seq2  ATTT-ATACACACA-ACACACACACACACACACACAC-CACACACTC-CA  991

seq1  TACACGAGGCCCCAAGCACCTGACACCCAGGCACCACCACAACCTCATTT  1049
      ||| |||||| |  |||| ||||||||   |||||||| ||| |||||| 
seq2  TAC-CGAGGCTC--AGCA-CTGACACC--AGCACCACC-CAA-CTCATT-  1032

seq1  ATTGCCTAAAGTCATTTGCTAGTTCTTTTCCTATTAGAACTACTC-TAGC  1098
        |||   |||||| ||||||| |||||  | ||||||||| ||| ||||
seq2  -ATGC--TAAGTCA-TTGCTAG-TCTTT--CCATTAGAACT-CTCTTAGC  1074

seq1  AATGCTGAACGTCCAGAGGGGATGATTTCTGTTTGTTAGTAGATGGCTTT  1148
       |||||| ||||| ||||             || ||| ||||   |||| 
seq2  -ATGCTG-ACGTCAAGAG------------ATTCGTT-GTAGTATGCTTG  1109

seq1  TGTCTCTGAGAACACAATTCCATATCCTTAG  1179
      |   |||| |||| |||||||||||||||||
seq2  T---TCTG-GAAC-CAATTCCATATCCTTAG  1135

seq1: chr12_47670266_47671435
seq2: B6Ng01-167O06.g_68_1217 (reverse)

seq1  TTTGTAACCAGTCATCTTATTAAGCATTCCCATTGTTTCTAATTGCTTTC  50
      |||||||||||| ||  ||||| ||||  ||| ||||||||||||| |||
seq2  TTTGTAACCAGTTATTCTATTAGGCAT--CCA-TGTTTCTAATTGC-TTC  46

seq1  AACTGGTTCTTGGTGCAATGT-ATGAAGATATGTCACTCTCTTTAAAAGG  99
      |||| | |||  |||| |||| ||||||||||||||| |||| | ||| |
seq2  AACTTG-TCT--GTGC-ATGTAATGAAGATATGTCAC-CTCTCTTAAAAG  91

seq1  TCCATTCCTGTTTCTTTCCCTGTTTCCTCTAAAATATTAAAATAATAATT  149
      ||   |||||||||||  |||||||||||| ||||| ||||||||||| |
seq2  TC--ATCCTGTTTCTT--CCTGTTTCCTCT-AAATA-TAAAATAATAA-T  134

seq1  GACTTTTTAATTAACCTTAGTTGCACAGGATTTATTCCTTTAAAATTTAG  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTTTTTAATTAACCTTAG-TGCACAGGATTTATTCCTTTAAAATTTAG  183

seq1  TCACTTATTTTTGTTTTGTTGTATTTTGTTTAATATTTTTCCTAAAATTT  249
      |||||||||||   ||||||||| ||||||||||||||||||||||||||
seq2  TCACTTATTTT--GTTTGTTGTA-TTTGTTTAATATTTTTCCTAAAATTT  230

seq1  AGCATTAAAATTATTGATGAAAACTAGTTCTTACTTTAGTTTTGTTTTTT  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCATTAAAATTATTGATGAAAACTAGTTCTTACTTTAGTTTTG-TTTTT  279

seq1  CACATGCTTCCTTTGTCAGAGTATGTCATCAATTTGAGTTGGCTCACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTTCCTTTGTCAGAGTATGTCATCAATTTGAGTTGGCTCACAAA  329

seq1  AGTAACTCAGTCTGTCATACTTCAATAAAAAGAATATAAACTATTCCACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCAGTCTGTCATACTTCAATAAAAAGAATATAAACTATTCCACG  379

seq1  TATTTCAAGTAGATTGAAATCGGAAACAGGAAACTGGATTTCAAATCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAGTAGATTGAAATCGGAAACAGGAAACTGGATTTCAAATCCTT  429

seq1  TGGAAAGATCACAAGAAGCAAGCAGTTAATGTGGTAAAGTCAGGTGGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATCACAAGAAGCAAGCAGTTAATGTGGTAAAGTCAGGTGGGCA  479

seq1  AGAAATATCCACAGCCCCAGAAGGACAGCAACTGCAGTGGCCATCCACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCCACAGCCCCAGAAGGACAGCAACTGCAGTGGCCATCCACAT  529

seq1  GTCTGATGTCCATGCTAATCTATTCATGAGCCCTCTCATGCCTGCCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTCCATGCTAATCTATTCATGAGCCCTCTCATGCCTGCCCTGG  579

seq1  ACATGATATTGTTGCCGTGTAGAGAACTGCCTTCAACTAGCTCAACAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATATTGTTGCCGTGTAGAGAACTGCCTTCAACTAGCTCAACAAGT  629

seq1  TAGGTCCATGCTAACAAAAGCCTGCCTCCAATTCCTTAAAATACTGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCATGCTAACAAAAGCCTGCCTCCAATTCCTTAAAATACTGAGAA  679

seq1  CACGGATGTAGAGAATCAGGCTCGTTATCATTTGTTGCAGCTAGTGTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGTAGAGAATCAGGCTCGTTATCATTTGTTGCAGCTAGTGTAAC  729

seq1  TGTTTCTTAATTTTATTGGATCATATACTTGACATTGAAATTCCTTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAATTTTATTGGATCATATACTTGACATTGAAATTCCTTATTT  779

seq1  CTTAAATATTTAGCGAGGGAAACCTGTGAAGACACTTGGATATGGGCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATTTAGCGAGGGAAACCTGTGAAGACACTTGGATATGGGCACC  829

seq1  TGTTGGGAGACTTCTTAACTCCTTTGTATGGGCAAAGAACATTTTCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGACTTCTTAACTCCTTTGTATGGGCAAAGAACATTTTCTTCT  879

seq1  GCCCTTCCTGATCTGAGATATTAATACTTTGTGTTTTCTTAGGGAATCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCTGATCTGAGATATTAATACTTTGTGTTTTCTTAGGGAATCAT  929

seq1  CCATTCCAGTAGACTTTCACATCTAATTGCACAGGGGTGAACTTTATAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAGTAGACTTTCACATCTAATTGCACAGGGGTGAACTTTATAAT  979

seq1  TTATTTTCTACATCTGTAATTTTTCTCTTTCATATTGTTTTTCTAATGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTACATCTGTAATTTTTCTCTTTCATATTGTTTTTCTAATGGT  1029

seq1  ACCAAGCATAGTCCTCTCCCCACAAACACAGAAAGCTATGGCTTAGTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATAGTCCTCTCCCCACAAACACAGAAAGCTATGGCTTAGTCTT  1079

seq1  CAGAATTTGAAAATAAGTTATATTTCAAGACAAGGGATCTTTGCAGATAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGAAAATAAGTTATATTTCAAGACAAGGGATCTTTGCAGATAG  1129

seq1  GGTTAAATGGGTAGGGAATTC  1170
      |||||||||||||||||||||
seq2  GGTTAAATGGGTAGGGAATTC  1150