BAC Information

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BAC

Clone NameB6Ng01-169D24
Chromosome12 (Build37)
Map Location 25,674,721 - 25,830,113
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169D24.bB6Ng01-169D24.g
ACCDH960279DH960280
length9931,080
definitionDH960279|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D24, 5' end.DH960280|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,829,120 - 25,830,113)(25,674,721 - 25,675,810)
sequence
gaattccagacaaaaagcacttgagttagcatctgtggctgtccctgggt
aaactccacacagatcaaaactctgtgccttgtggaattccagtcataga
gatccgcagtcagtgctctgtgtcccatgaccaggagtcaccgatccttt
gcagacagtgacaataaacacatcaagcaatttctcttccttaggctacc
accaatctcagccttgaatgtgtgcttaagtagattatgtgtgaatagtt
ttacaacttggaggaaggacacctcgaggaagccaagcaagcaatctttc
caaccagatccacttgcatggtgaccataaacacacacaccacacacact
caaataaactgaagggcatttgattgacctctacagggggagggggctgg
gagaagttccagcacaccacaggagcacctgttgggtggaacgcaggcct
ccagccatgttaaactgaaggtatgacttaaaaacaaagcatgccaggtg
tggtgcatgccttaaatcccagcactctgggaggcagaggcaggtggatc
tctgtgaattcaaagccagcctggtctacatagtgagctgctgaatcacc
agggttgagtgtcctctaacactctggatgacattgggcagggattcgtg
ggaactcccccatctctcctgcatggataagagagatattcgttaagtgc
agacttcgcagtcgggaggcagagggtgagaggtgtggatgtgtttcctg
tgcctgtagaattgagtactgaccacgaaggtccaagtgcagatagaaag
taggaccgaggcccagaggtcttcagcatggcgggcaactggggttgaca
gtgacttgttacctattttataaagaaccagagtaggaaagttagaagat
tctcaacacaaagaaaggatactgttaaggacctagatgctgatttggtc
actgtagggtatatgaatgttaaattatcataccatatcccat
gaattcttaatgtgaattgttttttgtttttttgttttgtttttgttttt
gttttgttttgttttgttttttagacagggtttctctgtatagccctggc
tgtcctggctgtcctcactttgtagacaaggctggcctcgaactcagaaa
tccacctgcctctgcctcccaagtgctgggattaaaggcgtgcgccacca
ccgcctggcaacaggctttttatgcttcatagtgaataggaattttttag
attgtactgactgtcatatataatgctatatgaccagtgagacccagtga
gaattttaagacaataaaaattttgtatactgtctttttctcatcttcca
atgaaaaagcaagtctttgaactcaaatgttagccataattgggtaacat
ttcagaagcagagtgtgaatttcttagttaccttacctgtgcaccctcac
tctgtgtttcttgaagacatttaccaagaagccataccattttcctacat
gactatttttctgtacattgtgtacattctacattttttacttttattct
acttactaatatttcctattagctagataatcacattaaataagttaact
ctgcaaaaatatatgtattattaaggcttaacacatgttaattgtcagtt
atatagtctgagtatttgtgttttaaaatggagactggtctctaattgat
ttaaaaaccattcccttgtgttactcctcctgatatttacttagtaaatt
tgtgttgtaaatgtccatctaaagactgtcctcttcccccgtccttttgc
gtgtctgtgtatcccagcagtacagtgtctacccaaatcatctgggcagc
gggcagaggccacgccgacatagtgcatcttctgctgcagaatggtgcga
aagtcaattgctctgatagtgagttgcagagtccacgcaggttctgcttg
tgctatgtataaatagtgtcattgaaacatctctaatgtatcttattttt
tgtatttcacattttacctggtattcacaggtaatagatggtcctgtatg
tggtatggaccatgtgttcttgaatcatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25829120_25830113
seq2: B6Ng01-169D24.b_46_1038 (reverse)

seq1  ATGGGATATGGTATGATAATTTAACATTCATATAACCTACAGTGACCAAA  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGGATATGGTATGATAATTTAACATTCATATACCCTACAGTGACCAAA  50

seq1  TCAGCATTCTTAGGTCCTTAACAGTTATCC-TTCTTTGTGTTGAGAATCT  99
      |||||||   |||||||||||||| ||||| |||||||||||||||||||
seq2  TCAGCAT--CTAGGTCCTTAACAG-TATCCTTTCTTTGTGTTGAGAATCT  97

seq1  TCTAAC-TTCCTACTCTGGTTCTTTATAAAATAGGTAACAAGTCACTGTC  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTTCCTACTCTGGTTCTTTATAAAATAGGTAACAAGTCACTGTC  147

seq1  AACCCCAGTTGCCCGCCATGCTGAAGACCTCTGGGCCTCGGTCCTACTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTTGCCCGCCATGCTGAAGACCTCTGGGCCTCGGTCCTACTTT  197

seq1  CTATCTGCACTTGGACCTTCGTGGTCAGTACTCAATTCTACAGGCACAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCACTTGGACCTTCGTGGTCAGTACTCAATTCTACAGGCACAGG  247

seq1  AAACACATCCACACCTCTCACCCTCTGCCTCCCGACTGCGAAGTCTGCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCCACACCTCTCACCCTCTGCCTCCCGACTGCGAAGTCTGCAC  297

seq1  TTAACGAATATCTCTCTTATCCATGCAGGAGAGATGGGGGAGTTCCCACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGAATATCTCTCTTATCCATGCAGGAGAGATGGGGGAGTTCCCACG  347

seq1  AATCCCTGCCCAATGTCATCCAGAGTGTTAGAGGACACTCAACCCTGGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGCCCAATGTCATCCAGAGTGTTAGAGGACACTCAACCCTGGTG  397

seq1  ATTCAGCAGCTCACTATGTAGACCAGGCTGGCTTTGAATTCACAGAGATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGCTCACTATGTAGACCAGGCTGGCTTTGAATTCACAGAGATC  447

seq1  CACCTGCCTCTGCCTCCCAGAGTGCTGGGATTTAAGGCATGCACCACACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCCAGAGTGCTGGGATTTAAGGCATGCACCACACC  497

seq1  TGGCATGCTTTGTTTTTAAGTCATACCTTCAGTTTAACATGGCTGGAGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCTTTGTTTTTAAGTCATACCTTCAGTTTAACATGGCTGGAGGC  547

seq1  CTGCGTTCCACCCAACAGGTGCTCCTGTGGTGTGCTGGAACTTCTCCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTCCACCCAACAGGTGCTCCTGTGGTGTGCTGGAACTTCTCCCAG  597

seq1  CCCCCTCCCCCTGTAGAGGTCAATCAAATGCCCTTCAGTTTATTTGAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCTGTAGAGGTCAATCAAATGCCCTTCAGTTTATTTGAGTG  647

seq1  TGTGTGGTGTGTGTGTTTATGGTCACCATGCAAGTGGATCTGGTTGGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGTGTGTGTTTATGGTCACCATGCAAGTGGATCTGGTTGGAAA  697

seq1  GATTGCTTGCTTGGCTTCCTCGAGGTGTCCTTCCTCCAAGTTGTAAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTGCTTGGCTTCCTCGAGGTGTCCTTCCTCCAAGTTGTAAAACT  747

seq1  ATTCACACATAATCTACTTAAGCACACATTCAAGGCTGAGATTGGTGGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACATAATCTACTTAAGCACACATTCAAGGCTGAGATTGGTGGTA  797

seq1  GCCTAAGGAAGAGAAATTGCTTGATGTGTTTATTGTCACTGTCTGCAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGAAGAGAAATTGCTTGATGTGTTTATTGTCACTGTCTGCAAAG  847

seq1  GATCGGTGACTCCTGGTCATGGGACACAGAGCACTGACTGCGGATCTCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGTGACTCCTGGTCATGGGACACAGAGCACTGACTGCGGATCTCTA  897

seq1  TGACTGGAATTCCACAAGGCACAGAGTTTTGATCTGTGTGGAGTTTACCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAATTCCACAAGGCACAGAGTTTTGATCTGTGTGGAGTTTACCC  947

seq1  AGGGACAGCCACAGATGCTAACTCAAGTGCTTTTTGTCTGGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGCCACAGATGCTAACTCAAGTGCTTTTTGTCTGGAATTC  993

seq1: chr12_25674721_25675810
seq2: B6Ng01-169D24.g_66_1145

seq1  GAATTCTTAATGTGAATTGTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGTGAATTGTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTT  50

seq1  GTTTTGTTTTGTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGC  100

seq1  TGTCCTGGCTGTCCTCACTTTGTAGACAAGGCTGGCCTCGAACTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCTGTCCTCACTTTGTAGACAAGGCTGGCCTCGAACTCAGAAA  150

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  200

seq1  CCGCCTGGCAACAGGCTTTTTATGCTTCATAGTGAATAGGAATTTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGGCAACAGGCTTTTTATGCTTCATAGTGAATAGGAATTTTTTAG  250

seq1  ATTGTACTGACTGTCATATATAATGCTATATGACCAGTGAGACCCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTGACTGTCATATATAATGCTATATGACCAGTGAGACCCAGTGA  300

seq1  GAATTTTAAGACAATAAAAATTTTGTATACTGTCTTTTTCTCATCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGACAATAAAAATTTTGTATACTGTCTTTTTCTCATCTTCCA  350

seq1  ATGAAAAAGCAAGTCTTTGAACTCAAATGTTAGCCATAATTGGGTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCAAGTCTTTGAACTCAAATGTTAGCCATAATTGGGTAACAT  400

seq1  TTCAGAAGCAGAGTGTGAATTTCTTAGTTACCTTACCTGTGCACCCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCAGAGTGTGAATTTCTTAGTTACCTTACCTGTGCACCCTCAC  450

seq1  TCTGTGTTTCTTGAAGACATTTACCAAGAAGCCATACCATTTTCCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTCTTGAAGACATTTACCAAGAAGCCATACCATTTTCCTACAT  500

seq1  GACTATTTTTCTGTACATTGTGTACATTCTACATTTTTTACTTTTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTTCTGTACATTGTGTACATTCTACATTTTTTACTTTTATTCT  550

seq1  ACTTACTAATATTTCCTATTAGCTAGATAATCACATTAAATAAGTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTAATATTTCCTATTAGCTAGATAATCACATTAAATAAGTTAACT  600

seq1  CTGCAAAAATATATGTATTATTAAGGCTTAACACATGTTAATTGTCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAATATATGTATTATTAAGGCTTAACACATGTTAATTGTCAGTT  650

seq1  ATATAGTCTGAGTATTTGTGTTTTAAAATGGAGACTGGTCTCTAATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCTGAGTATTTGTGTTTTAAAATGGAGACTGGTCTCTAATTGAT  700

seq1  TTAAAAACCATTCCCTTGTGTTACTCCTCCTGATATTTACTTAGTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCATTCCCTTGTGTTACTCCTCCTGATATTTACTTAGTAAATT  750

seq1  TGTGTTGTAAATGTCCATCTAAAGACTGTCCTCTTCCCCCGTCCTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTAAATGTCCATCTAAAGACTGTCCTCTTCCCCCGTCCTTTTGC  800

seq1  GTGTCTGTGTATCCCAGCAGTACAGTGTCTACCC-AATCATCTGGGCAGC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTCTGTGTATCCCAGCAGTACAGTGTCTACCCAAATCATCTGGGCAGC  850

seq1  GGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGA  900

seq1  AAGTCAATTGCTCTGATAAGGTGAGTTGCAGAGTCCACGCAGGTTCTGCT  949
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AAGTCAATTGCTCTGATA--GTGAGTTGCAGAGTCCACGCAGGTTCTGCT  948

seq1  TGTGCTATGTTATAAATAGTGTCATTTGAAACATCTCTAATGTATCTTA-  998
      ||||||||| |||||||||||||| |||||||||||||||||||||||| 
seq2  TGTGCTATG-TATAAATAGTGTCA-TTGAAACATCTCTAATGTATCTTAT  996

seq1  TTTTTGTATTTCAACATTTTTACCTGTGTATTCACAGGTAATAGATGGGT  1048
      |||||||||||| ||| ||||||||| ||||||||||||||||||| |||
seq2  TTTTTGTATTTC-ACA-TTTTACCTG-GTATTCACAGGTAATAGAT-GGT  1042

seq1  CTTGTATTTGTGTTATGGACCATGTGTTCTTGATATTCATTA  1090
      | ||||  |||| |||||||||||||||||||  | ||||||
seq2  CCTGTA--TGTGGTATGGACCATGTGTTCTTG--AATCATTA  1080