BAC Information

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BAC

Clone NameB6Ng01-169H15
Chromosome12 (Build37)
Map Location 86,648,924 - 86,841,627
singlet/doubletdoublet
Overlap geneNek9, Tmed10, LOC100042549, LOC667119, Fos
Upstream geneZadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik
Downstream geneEG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H15.bB6Ng01-169H15.g
ACCDH960446DH960447
length1,205791
definitionDH960446|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H15, 5' end.DH960447|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,648,924 - 86,650,142)(86,840,840 - 86,841,627)
sequence
gaattcaacactttctctgaggaaaaatgtgcagtaggtaagcactttgt
acagacactgggaggaagggtgaagaagacgggtcagggaagaaactgtc
cctgtcattcctgaccctcagtaactcagaactcactatttagaagtcag
tctcgtaagtgaaacgctattgagctactgtgctcagtgctgcactggga
attctctatctctgtgctcaccagaagcagcacggaagctgtacaaggta
gcaatacctacacctggccccagagatcctgattaaactagtcaagggca
gtgcaggactaaggtttataaaagccatgcttttatcatgaatttcaaag
tactctgtatgcaaaaagcatttggaaattttcttttaaaagaattacta
aacgtttctcaagaaaacacaaatgtagacataacattattaaatgggaa
taatagattctatgatgcagatgtatgctgggggaagagctcaaaactgt
tccattttaaaaaggtccaaacagatggtggtggaacaggcctgcaaccc
ctcaactcaggaggtggaagcaggttaggaactcaaggttgctcctggca
ctaagcactgagtctgaggctagactgagttataaaacagtccaacagag
aagaaacggtggatgactagctgggaaatgacaatgttcagtttctgcca
ctctgcatgacatctttatctagtacaagacttgaggaagcagcccctgc
ttcagagtagcacatccagcagtgtcaccacagtgccttaggtgagagtc
aatctggtctaagccaccccaactccacagagatgaaacccttaccaaca
ataagaatggtgtgccagccacggcaagaaaggtctggaacatgatgcag
gatccaaaaataggccgaggccatgaggtacagatatcagagccatgtgg
tctctctgtgggagtcattgccaggcggccattaccaccattacccaggc
aagatgtgattatctagaaaagaattaagagcagactattgagactattt
cccattctatgggtatcccactgttaccaccctggaactagaaagaagct
actaatgaagggaaaagcctaattattttctattatagtaaaatgactca
cattcatggtctaccattcatccttcatcattcattctttatccaacaaa
ttgaa
gaattcaaccatggggggggggcgctcttttctaatcaccttcaaaggcc
ctgcctctaattaaacactatcttcagaccaagaccccactgtgaactgc
gttctgacacctgaaatgtagagggttacacaaacacctccaagtcacag
tgttggtgtctcttaagcagcccttcattgttttgctgtattttcttatg
ttctagaaatcaaagcctacgcatgtcacctgaaggctaaaccactgagc
tacacgcccagcccttgtggcccccagttttaattgaggcaaaccaatga
agctattttgtctacacatacttcacaaacatgaaacatacgatattcac
aaacccttttagttctttttttcaaagatgtaagcatttgagtgcttcgc
ctgaatgtaggtctacagatcacatgctggtggtgcctagataagccaga
agagggtgtcaggacccctgggactagagttatacatggctgtgaaacat
gtacaagtgttcagttctgggaattggatgcaggttttttgtgtgtgagg
ccagtgcttttaacagctaagccgtctctccagctctgagttctttttta
aaaatcatatttttgttgtgtatgcatgggccacagcatgggtatgtgtg
gaggtcaggggtaaactttgggtatttgttctccccttccacggtgggtt
ctgagtttcaaacttggggttgctaaggttgtacaataattgctttttac
ccatgggaccagctccctggttcgggggcgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86648924_86650142
seq2: B6Ng01-169H15.b_45_1249

seq1  GAATTCAACACTTTCTCTGAGGAAAAATGTGCAGTAGGTAAGCACTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTTTCTCTGAGGAAAAATGTGCAGTAGGTAAGCACTTTGT  50

seq1  ACAGACACTGGGAGGAAGGGTGAAGAAGACGGGTCAGGGAAGAAACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTGGGAGGAAGGGTGAAGAAGACGGGTCAGGGAAGAAACTGTC  100

seq1  CCTGTCATTCCTGACCCTCAGTAACTCAGAACTCACTATTTAGAAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATTCCTGACCCTCAGTAACTCAGAACTCACTATTTAGAAGTCAG  150

seq1  TCTCGTAAGTGAAACGCTATTGAGCTACTGTGCTCAGTGCTGCACTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTAAGTGAAACGCTATTGAGCTACTGTGCTCAGTGCTGCACTGGGA  200

seq1  ATTCTCTATCTCTGTGCTCACCAGAAGCAGCACGGAAGCTGTACAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATCTCTGTGCTCACCAGAAGCAGCACGGAAGCTGTACAAGGTA  250

seq1  GCAATACCTACACCTGGCCCCAGAGATCCTGATTAAACTAGTCAAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCTACACCTGGCCCCAGAGATCCTGATTAAACTAGTCAAGGGCA  300

seq1  GTGCAGGACTAAGGTTTATAAAAGCCATGCTTTTATCATGAATTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGACTAAGGTTTATAAAAGCCATGCTTTTATCATGAATTTCAAAG  350

seq1  TACTCTGTATGCAAAAAGCATTTGGAAATTTTCTTTTAAAAGAATTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTATGCAAAAAGCATTTGGAAATTTTCTTTTAAAAGAATTACTA  400

seq1  AACGTTTCTCAAGAAAACACAAATGTAGACATAACATTATTAAATGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTCTCAAGAAAACACAAATGTAGACATAACATTATTAAATGGGAA  450

seq1  TAATAGATTCTATGATGCAGATGTATGCTGGGGGAAGAGCTCAAAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTCTATGATGCAGATGTATGCTGGGGGAAGAGCTCAAAACTGT  500

seq1  TCCATTTTAAAAAGGTCCAAACAGATGGTGGTGGAACAGGCCTGCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAAAAAGGTCCAAACAGATGGTGGTGGAACAGGCCTGCAACCC  550

seq1  CTCAACTCAGGAGGTGGAAGCAGGTTAGGAACTCAAGGTTGCTCCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCAGGAGGTGGAAGCAGGTTAGGAACTCAAGGTTGCTCCTGGCA  600

seq1  CTAAGCACTGAGTCTGAGGCTAGACTGAGTTATAAAACAGTCCAACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACTGAGTCTGAGGCTAGACTGAGTTATAAAACAGTCCAACAGAG  650

seq1  AAGAAACGGTGGATGACTAGCTGGGAAATGACAATGTTCAGTTTCTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGGTGGATGACTAGCTGGGAAATGACAATGTTCAGTTTCTGCCA  700

seq1  CTCTGCATGACATCTTTATCTAGTACAAGACTTGAGGAAGCAGCCCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGACATCTTTATCTAGTACAAGACTTGAGGAAGCAGCCCCTGC  750

seq1  TTCAGAGTAGCACATCCAGCAGTGTCACCACAGTGCCTTAGGTGAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTAGCACATCCAGCAGTGTCACCACAGTGCCTTAGGTGAGAGTC  800

seq1  AATCTGGTCTAAGCCACCCCAACTCCACAGAGATGAAACCCTTACCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTCTAAGCCACCCCAACTCCACAGAGATGAAACCCTTACCAACA  850

seq1  ATAAGAATGGTGTGCCAGCCACGGCAAGAAAGGTCTGGAACATGATGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAGAATGGTGTGCCAGCCACGGCAAGAAAGGTCTGGAACATGATGCA-  899

seq1  GGATCCAAAAATAGGCCGAGGCCATGAGGTACAGATATCAGAGCCATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAAAAATAGGCCGAGGCCATGAGGTACAGATATCAGAGCCATGTG  949

seq1  GTCTCTCTGTGGGAGTCATTGCCAGGCGGCCATTACCACCATTACCCCAG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCTCTCTGTGGGAGTCATTGCCAGGCGGCCATTACCACCATTA-CCCAG  998

seq1  GCAAAGATGTGATTATCTAGAAAAGAATTAAAGAGCAGACTAATGAGACT  1050
      || |||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GC-AAGATGTGATTATCTAGAAAAGAATT-AAGAGCAGACTATTGAGACT  1046

seq1  ATTTTCCCAATTCTATGGGTATCCCACTGTTA-CACCCTGGAACTAGAAA  1099
      ||||  || ||||||||||||||||||||||| |||||||||||||||||
seq2  ATTT--CCCATTCTATGGGTATCCCACTGTTACCACCCTGGAACTAGAAA  1094

seq1  GAAGGCCTACTAAATGAGGGAAAAG-CTAATTA-TTTCTATATATAGGTA  1147
      ||||  |||||||   ||||||||| ||||||| ||||||| |||||   
seq2  GAAG--CTACTAATGAAGGGAAAAGCCTAATTATTTTCTAT-TATAG--T  1139

seq1  AAAATGACTACCATTCCTATGTCTACCATTCATTCATTCATCCATTCATT  1197
      |||||||||  ||||| |  |||||||||||| || ||||| ||||||||
seq2  AAAATGACTCACATTCAT-GGTCTACCATTCA-TCCTTCAT-CATTCATT  1186

seq1  CATTTATTCAAACAAATATGAA  1219
      | |||| || ||||||| ||||
seq2  C-TTTA-TCCAACAAAT-TGAA  1205

seq1: chr12_86840840_86841627
seq2: B6Ng01-169H15.g_68_858 (reverse)

seq1  CCCCCCCCCCCCGCCCCCGAACCAGGGAGCTGGTCCCATGG--TAAAAGC  48
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  CCCCCCCCCCCCGCCCCCGAACCAGGGAGCTGGTCCCATGGGTAAAAAGC  50

seq1  AATTATTGTACAACCTTAGCAA-CCCAAGTTTGAAACTCAGAACCCACCG  97
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATTATTGTACAACCTTAGCAACCCCAAGTTTGAAACTCAGAACCCACCG  100

seq1  TGGAAGGGGAGAACAAATACCCAAAGTTTACCCCTGACCTCCACACATAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGGAGAACAAATACCCAAAGTTTACCCCTGACCTCCACACATAC  150

seq1  CCATGCTGTGGCCCATGCATACACAACAAAAATATGATTTTTAAAAAAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGTGGCCCATGCATACACAACAAAAATATGATTTTTAAAAAAGA  200

seq1  ACTCAGAGCTGGAGAGACGGCTTAGCTGTTAAAAGCACTGGCCTCACACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGCTGGAGAGACGGCTTAGCTGTTAAAAGCACTGGCCTCACACA  250

seq1  CAAAAAACCTGCATCCAATTCCCAGAACTGAACACTTGTACATGTTTCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCTGCATCCAATTCCCAGAACTGAACACTTGTACATGTTTCAC  300

seq1  AGCCATGTATAACTCTAGTCCCAGGGGTCCTGACACCCTCTTCTGGCTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTATAACTCTAGTCCCAGGGGTCCTGACACCCTCTTCTGGCTTA  350

seq1  TCTAGGCACCACCAGCATGTGATCTGTAGACCTACATTCAGGCGAAGCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCACCACCAGCATGTGATCTGTAGACCTACATTCAGGCGAAGCAC  400

seq1  TCAAATGCTTACATCTTTGAAAAAAAGAACTAAAAGGGTTTGTGAATATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTACATCTTTGAAAAAAAGAACTAAAAGGGTTTGTGAATATC  450

seq1  GTATGTTTCATGTTTGTGAAGTATGTGTAGACAAAATAGCTTCATTGGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTCATGTTTGTGAAGTATGTGTAGACAAAATAGCTTCATTGGTT  500

seq1  TGCCTCAATTAAAACTGGGGGCCACAAGGGCTGGGCGTGTAGCTCAGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAATTAAAACTGGGGGCCACAAGGGCTGGGCGTGTAGCTCAGTGG  550

seq1  TTTAGCCTTCAGGTGACATGCGTAGGCTTTGATTTCTAGAACATAAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTTCAGGTGACATGCGTAGGCTTTGATTTCTAGAACATAAGAAA  600

seq1  ATACAGCAAAACAATGAAGGGCTGCTTAAGAGACACCAACACTGTGACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAAAACAATGAAGGGCTGCTTAAGAGACACCAACACTGTGACTT  650

seq1  GGAGGTGTTTGTGTAACCCTCTACATTTCAGGTGTCAGAACGCAGTTCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTTTGTGTAACCCTCTACATTTCAGGTGTCAGAACGCAGTTCAC  700

seq1  AGTGGGGTCTTGGTCTGAAGATAGTGTTTAATTAGAGGCAGGGCCTTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTCTTGGTCTGAAGATAGTGTTTAATTAGAGGCAGGGCCTTTGA  750

seq1  AGGTGATTAGAAAAGAGCGCCCCCCCCCCATGGTTGAATTC  788
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTAGAAAAGAGCGCCCCCCCCCCATGGTTGAATTC  791