BAC Information

Click to search

BAC

Clone NameB6Ng01-169J24
Chromosome12 (Build37)
Map Location 63,599,360 - 63,704,243
singlet/doubletdoublet
Overlap geneLOC100040438
Upstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
Downstream gene1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J24.bB6Ng01-169J24.g
ACCDH960552DH960553
length1,2261,130
definitionDH960552|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J24, 5' end.DH960553|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,599,360 - 63,600,619)(63,703,107 - 63,704,243)
sequence
gaattcacttgcaaaggaatgtttttttttcaacactctcttactaattc
taatataacaattaaaattcataaaagctattttatagttccatcatgtt
ttctataggcttcataattcacattagcttctcaaaagtaaaaagtttca
taaatgtaagaattcgttatttaaatcaaaacttattcttttcattctat
ttgtgttttaggagaaatgacacatgatgtttgtttgaggcattatgtta
tatataatttccaatactatatataataaataacctgataacttgttggc
tgtattttattaattatgaacatatgatcacaacaagctaaatgatatta
caacttgtgttttcatattattatcttattattctacttgtgaacatgag
atctttaatatacaaaaaactccatgattttcccaataatataggagata
ttttattatccaccaataatttgactgattggttaatgacgaacagaact
tggataagttttccaataagtgaggaaaattatgagtatctcaaacaggt
atctcaaaataaatgtttagaaattggaattgtttaagaataaacatgtg
taaactgatcaaatccacatgataacaatatgttaaataattacaaataa
taactgcttgtggaaaaatttgtagtgatataaagaaagctaactgagta
gataaaatataaccaataaggataaagtgttatttgtaaataaatatata
aactatttttgtaacaacattaatctgttgttgttgatgctgaagattga
atctaggatttcctacaggctagtcaagttctgtacccctgaggtacagc
cttggactccacagaacaagctaaacaattctcagctacatgagtgttgc
tgacatgtcattccctttcccacccattttttcttaggtatatacttcac
ttacatttcaaatgctatccagaaagtccctataccctcccctgcccctg
cttccctaaccacctactctacttcttggccctggtgtcccctgtactga
ggcatataaagttacatgaacaatggcctctcttcccatgatggcaagta
gtcatctttctgctacaatgcagctagagaccgagtgctgggggaactgg
ggggtcaattgtgttccactttaagggtgccaatcctagtctgattccta
gcttccatggcctcatgttccatcca
gaattctaaaacccacaggtctgggattccattcagtgtattacttattt
aaaatagttattccttcactttatatccaaatattagtctccctcagtgt
atttctagagaggtttaatttaagagagaagacccaccatgaatcttgaa
tgagttagtactatatcaccggctatggccttggagtaaatacaaaagag
taaagtaagttgaataccactgaggtttgttgcatgctttgtgcctttag
aaaaaatgagaccagctgcctcacctctctggcccatgtttcctctgcca
tgttggttgtacaacaaaagattaaaactgtggacaacacaaagcatttc
tctattaagtcattttatttttttgattaatgactgttagtgtttggtta
caaacatgtaacaaatgcaagcctagaatatcttatagtgtctgaaagca
agctagtgttaagataatgatataaaacatgatgacactgtttctcagga
cagaaaagccagaaaaatttatatttggagcaattttaataacaaagtca
atgaatggagtattagattatatagaaatgtaacttcatgtttataatta
catacaaagtttagtaaatgcaaaagtggaatggaaaattcttaaggatt
tcataggcaatgaactctcaagggagtgcaaacaaggaaatgtggcttct
atccaagaacacacaatggaaatagggtgaggcttgaattaattatcagg
gagaaacctggcatgcacacttcatcgaggtgatacaagtaaatatagct
ggcataattgataaacttcaaggatgttcaaactttatttctaagatatt
cttctgctcccactataaccaactacctgagaatgataaaaggagcaaag
aaattccaaatacattctacttaaatatccttatttcttctccaaagtgt
aaagagataaaagtgtaaactcatagagcatgagagtaaacaaatgtaaa
ggtctcaatgggcttttagaaaagaaatacttatagataaaatgaaaata
tgataataaaaaagtcttagaaaatattctgtcaatacatgcttttcagt
tctgttttactggcttgtgacttattatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63599360_63600619
seq2: B6Ng01-169J24.b_45_1270

seq1  GAATTCACTTGCAAAGGAATGTTTTTTTTTCAACACTCTCTTACTAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCAAAGGAATGTTTTTTTTTCAACACTCTCTTACTAATTC  50

seq1  TAATATAACAATTAAAATTCATAAAAGCTATTTTATAGTTCCATCATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAACAATTAAAATTCATAAAAGCTATTTTATAGTTCCATCATGTT  100

seq1  TTCTATAGGCTTCATAATTCACATTAGCTTCTCAAAAGTAAAAAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGGCTTCATAATTCACATTAGCTTCTCAAAAGTAAAAAGTTTCA  150

seq1  TAAATGTAAGAATTCGTTATTTAAATCAAAACTTATTCTTTTCATTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAGAATTCGTTATTTAAATCAAAACTTATTCTTTTCATTCTAT  200

seq1  TTGTGTTTTAGGAGAAATGACACATGATGTTTGTTTGAGGCATTATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTAGGAGAAATGACACATGATGTTTGTTTGAGGCATTATGTTA  250

seq1  TATATAATTTCCAATACTATATATAATAAATAACCTGATAACTTGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTTCCAATACTATATATAATAAATAACCTGATAACTTGTTGGC  300

seq1  TGTATTTTATTAATTATGAACATATGATCACAACAAGCTAAATGATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTATTAATTATGAACATATGATCACAACAAGCTAAATGATATTA  350

seq1  CAACTTGTGTTTTCATATTATTATCTTATTATTCTACTTGTGAACATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTGTTTTCATATTATTATCTTATTATTCTACTTGTGAACATGAG  400

seq1  ATCTTTAATATACAAAAAACTCCATGATTTTCCCAATAATATAGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATATACAAAAAACTCCATGATTTTCCCAATAATATAGGAGATA  450

seq1  TTTTATTATCCACCAATAATTTGACTGATTGGTTAATGACGAACAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATCCACCAATAATTTGACTGATTGGTTAATGACGAACAGAACT  500

seq1  TGGATAAGTTTTCCAATAAGTGAGGAAAATTATGAGTATCTCAAACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTTTTCCAATAAGTGAGGAAAATTATGAGTATCTCAAACAGGT  550

seq1  ATCTCAAAATAAATGTTTAGAAATTGGAATTGTTTAAGAATAAACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAATAAATGTTTAGAAATTGGAATTGTTTAAGAATAAACATGTG  600

seq1  TAAACTGATCAAATCCACATGATAACAATATGTTAAATAATTACAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGATCAAATCCACATGATAACAATATGTTAAATAATTACAAATAA  650

seq1  TAACTGCTTGTGGAAAAATTTGTAGTGATATAAAGAAAGCTAACTGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTTGTGGAAAAATTTGTAGTGATATAAAGAAAGCTAACTGAGTA  700

seq1  GATAAAATATAACCAATAAGGATAAAGTGTTATTTGTAAATAAATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATATAACCAATAAGGATAAAGTGTTATTTGTAAATAAATATATA  750

seq1  AACTATTTTTGTAACAACATTAATCTGTTGTTGTTGATGCTGAAGATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTGTAACAACATTAATCTGTTGTTGTTGATGCTGAAGATTGA  800

seq1  ATCTAGGATTTCCTACAGGCTAGTCAAGTTCTGTACCCCTGAGGTACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGATTTCCTACAGGCTAGTCAAGTTCTGTACCCCTGAGGTACAGC  850

seq1  CTTGGACTCCACAGAACAAGCTAAACAATTCTCAGCTACATGAGTGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCCACAGAACAAGCTAAACAATTCTCAGCTACATGAGTGTTGC  900

seq1  TGACATGTCATTCCCTTTCCCACCCATTTTTTCTTAGGTATATACTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTCATTCCCTTTCCCACCCATTTTTTCTTAGGTATATACTTCAC  950

seq1  TTACATTTCAAATGCTATCCAGAAAGTCCCCTATACCCTCCCCCTGCCCC  1000
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TTACATTTCAAATGCTATCCAGAAAGT-CCCTATACCCT-CCCCTGCCCC  998

seq1  TGCTTCCCTAACCACCTACTCCTACTTCTTGGCCCTGGTGTTCCCCCTGT  1050
      |||||||||||||||||||| ||||||||||||||||||||  |||||||
seq2  TGCTTCCCTAACCACCTACT-CTACTTCTTGGCCCTGGTGT--CCCCTGT  1045

seq1  ACTGAGGCATATAAAGTTTACATGACCAATGGGCCTCTCTTCCCAATGAT  1100
      |||||||||||||||| |||||||| |||| ||||||||||||| |||||
seq2  ACTGAGGCATATAAAG-TTACATGAACAAT-GGCCTCTCTTCCC-ATGAT  1092

seq1  GGCAAAGTAGGTCATC-TTCTGCTACAAATGCAGCTAGAGACACGAGTGC  1149
      ||| ||||| |||||| ||||||||| ||||||||||||||| |||||||
seq2  GGC-AAGTA-GTCATCTTTCTGCTAC-AATGCAGCTAGAGAC-CGAGTGC  1138

seq1  TGGGGGAACTGGTGAGTTCATATTGTTGTTCCACCTTTAGGGTTGCATAT  1199
      |||||||||||| | | ||| |||| ||||||| ||||| || |||  ||
seq2  TGGGGGAACTGG-GGGGTCA-ATTG-TGTTCCA-CTTTAAGGGTGCCAAT  1184

seq1  CCCTTTCAGCTCCTTGGGTATTTTCTCTAGCTTCTCCATTGGGGCCTCTT  1249
      ||   || | | |             ||||||  |||||   ||||||  
seq2  CCTAGTCTGATTC-------------CTAGCT--TCCAT---GGCCTC-A  1215

seq1  TGTTCCATCCA  1260
      |||||||||||
seq2  TGTTCCATCCA  1226

seq1: chr12_63703107_63704243
seq2: B6Ng01-169J24.g_66_1195 (reverse)

seq1  AGATAAATTAGTCAC-AGCCAGTAAAACAGAACTG-ATAGCATGTATTGA  48
      |||| ||| |||||| ||||||||||||||||||| | ||||||||||||
seq2  AGAT-AATAAGTCACAAGCCAGTAAAACAGAACTGAAAAGCATGTATTGA  49

seq1  CAGAATATTTTCCTTAGGACTTTTTTTATTATCATATTTTCATTTTTATC  98
      ||||||||||||  || ||| ||||||||||||||||||||| |||||||
seq2  CAGAATATTTTC--TAAGAC-TTTTTTATTATCATATTTTCA-TTTTATC  95

seq1  TAT-AGTATTTCTTTTCTAAGAGCCCATTGAGACCTTTACATTTTGTTTA  147
      ||| |||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TATAAGTATTTCTTTTCTAAAAGCCCATTGAGACCTTTACA-TTTGTTTA  144

seq1  CTCTTCATGCTCTATGGGTTTTACACTTTTTATCTCCTTTACACTTTGGA  197
      ||| |||||||||||| | ||||||| |||||||| ||||||||||||||
seq2  CTC-TCATGCTCTATGAG-TTTACAC-TTTTATCT-CTTTACACTTTGGA  190

seq1  GAAGAAATAAGGATATTTAAGTAGAATGTATTTGGAATTTCTTTGCTCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAAGGATATTTAAGTAGAATGTATTTGGAATTTCTTTGCTCCT  240

seq1  TTTATCATTCTCAGGTAGTTGGTTATAGTGGGAGCAGAAGAATATCTTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTCTCAGGTAGTTGGTTATAGTGGGAGCAGAAGAATATCTTAG  290

seq1  AAATAAAGTTTGAACATCCTTGAAGTTTATCAATTATGCCAGCTATATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTTTGAACATCCTTGAAGTTTATCAATTATGCCAGCTATATTT  340

seq1  ACTTGTATCACCTCGATGAAGTGTGCATGCCAGGTTTCTCCCTGATAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATCACCTCGATGAAGTGTGCATGCCAGGTTTCTCCCTGATAATT  390

seq1  AATTCAAGCCTCACCCTATTTCCATTGTGTGTTCTTGGATAGAAGCCACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGCCTCACCCTATTTCCATTGTGTGTTCTTGGATAGAAGCCACA  440

seq1  TTTCCTTGTTTGCACTCCCTTGAGAGTTCATTGCCTATGAAATCCTTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTTGCACTCCCTTGAGAGTTCATTGCCTATGAAATCCTTAAG  490

seq1  AATTTTCCATTCCACTTTTGCATTTACTAAACTTTGTATGTAATTATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCATTCCACTTTTGCATTTACTAAACTTTGTATGTAATTATAAA  540

seq1  CATGAAGTTACATTTCTATATAATCTAATACTCCATTCATTGACTTTGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTTACATTTCTATATAATCTAATACTCCATTCATTGACTTTGTT  590

seq1  ATTAAAATTGCTCCAAATATAAATTTTTCTGGCTTTTCTGTCCTGAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTGCTCCAAATATAAATTTTTCTGGCTTTTCTGTCCTGAGAAA  640

seq1  CAGTGTCATCATGTTTTATATCATTATCTTAACACTAGCTTGCTTTCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATCATGTTTTATATCATTATCTTAACACTAGCTTGCTTTCAGA  690

seq1  CACTATAAGATATTCTAGGCTTGCATTTGTTACATGTTTGTAACCAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAGATATTCTAGGCTTGCATTTGTTACATGTTTGTAACCAAACA  740

seq1  CTAACAGTCATTAATCAAAAAAATAAAATGACTTAATAGAGAAATGCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTCATTAATCAAAAAAATAAAATGACTTAATAGAGAAATGCTTT  790

seq1  GTGTTGTCCACAGTTTTAATCTTTTGTTGTACAACCAACATGGCAGAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCCACAGTTTTAATCTTTTGTTGTACAACCAACATGGCAGAGGA  840

seq1  AACATGGGCCAGAGAGGTGAGGCAGCTGGTCTCATTTTTTCTAAAGGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGCCAGAGAGGTGAGGCAGCTGGTCTCATTTTTTCTAAAGGCAC  890

seq1  AAAGCATGCAACAAACCTCAGTGGTATTCAACTTACTTTACTCTTTTGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGCAACAAACCTCAGTGGTATTCAACTTACTTTACTCTTTTGTA  940

seq1  TTTACTCCAAGGCCATAGCCGGTGATATAGTACTAACTCATTCAAGATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCAAGGCCATAGCCGGTGATATAGTACTAACTCATTCAAGATTC  990

seq1  ATGGTGGGTCTTCTCTCTTAAATTAAACCTCTCTAGAAATACACTGAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGTCTTCTCTCTTAAATTAAACCTCTCTAGAAATACACTGAGGG  1040

seq1  AGACTAATATTTGGATATAAAGTGAAGGAATAACTATTTTAAATAAGTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATATTTGGATATAAAGTGAAGGAATAACTATTTTAAATAAGTAA  1090

seq1  TACACTGAATGGAATCCCAGACCTGTGGGTTTTAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAATGGAATCCCAGACCTGTGGGTTTTAGAATTC  1130