BAC Information

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BAC

Clone NameB6Ng01-169P21
Chromosome12 (Build37)
Map Location 78,090,326 - 78,202,668
singlet/doubletdoublet
Overlap geneLOC100041765
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max
Downstream geneLOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P21.bB6Ng01-169P21.g
ACCDH960820DH960821
length6091,143
definitionDH960820|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P21, 5' end.DH960821|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,090,326 - 78,090,951)(78,201,523 - 78,202,668)
sequence
gaattcaatccccatagagagctagcgagagagtagaacttacagccagt
gactaggagtaaagcatttggtaaaatcctcatgtctgaattgtagagac
cccaagcccccacacactgtgggtttttttttttttttccccttgacata
aactaaagtcttctaaaaagggggacctgcagccaaaaacttctctccat
caaatgggttggaaaacaacccggtaaggaattttctttacgggtaattg
agggaaaaagggcccccccccccgggggaaatgccttcccagggttcttc
cgggacctcggcttcatttccggccttcagttccggcctgggttttcctc
aagggacggtgatatgtaaaccaaataacccctctcactcctcattggct
taaacccaactcgggttctattgtacaaaattaaaacccacactaggacc
cctcctgtatcaattccccttggtgcctgggtcttctcaggacctgtcac
attctcctgcaggacttcaccttcggctgggactaaatagccccttttct
aatagtgagctggacccggcttgactttgggatgtccccgaagctcgtgc
tttgagcac
gaattcttctgtagaagtaaaatgtccaagtgcagtttctatagtaatta
ttattacaacaacaataatgttggctagtatttagtgaacttttaaaatg
caatccatgccattattaaatgaattcctcatagaaagtcctaaggagaa
ggaggtatcactagctatattacatagtcaaaaaacaaacaagcaaaaaa
caaacaaaatcccacaggctcctggggtgagggactgccatattctaagt
gcctgtgcccttccaaaattcacacactgaagtcctacctgaaagacatt
ggtatttgggtgggactttgggaggataactcagtcatggtagtgactat
gtaagagactccacacagcccccttgctcccattctgtgagaacacagca
agaaagctctatttaggaacaagaaaatgggttttcaccaaacacccaag
ctacttgatgccttgagcttggatgttgattttctggtgtttgaaaaata
cctggactactgtccaagatcacagtattcgttaatgatactagtgcagg
acttatttcctctactgcaagagcccttagcttccaggctattgctacct
tacagccccatcagccacctccagtttgtaacctacccagcatcactcct
ccacaccacacatcctctccctgactccatctctcacctgtccttctaga
tgccttcaagactttctgcagttgtcttaggtgtctcagatggttcccat
gcacagtcggctcctagagaatccataccctcactgtctcccacctatga
aaatgttatctttcattctgagccacacattctgagcagctcttcctatc
ttccttttcagaaagggtttttcaagtgagcggtaggactgtcccttctc
tctgctgcactgaaagttccccgtagtaataaaagctgccagtaactaga
gtagagcacttcttctgtcatattttccttagtctcataacagtcctata
tactgggcattcccatgtgtggctaggagaagtaacttctcatctgtaac
tacaaggcagaactaggaacaatgcttattttggctaagtcttttactct
tgggttcctgtctgggttttggaatgggtttcacatagcctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78090326_78090951
seq2: B6Ng01-169P21.b_46_654

seq1  GAATTCAATCCCCATAGAGAGCTAGCGAGAGAGTAGAACTTACAGCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCCATAGAGAGCTAGCGAGAGAGTAGAACTTACAGCCAGT  50

seq1  GACTAGGAGTAAAGCATTTGGTAAAATCCTCATGTCTGAATTGTAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGAGTAAAGCATTTGGTAAAATCCTCATGTCTGAATTGTAGAGAC  100

seq1  CCCAAGCCCCCACACACTGTGGGTTTTTTTTTTTTTTTCACCTTGACATA  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCAAGCCCCCACACACTGTGGGTTTTTTTTTTTTTTTCCCCTTGACATA  150

seq1  AACTAGAGTCATCTGAAAAGTGGGAGCTGCAGTCAAAAACATCTCTCCAT  200
      ||||| |||| ||| ||||| |||| |||||| ||||||| |||||||||
seq2  AACTAAAGTCTTCTAAAAAGGGGGACCTGCAGCCAAAAACTTCTCTCCAT  200

seq1  CAGATTGGCTGGTAGACAAGCCTGTGAGGTAGTTTCTTTACTGGTAATTG  250
      || || || ||| | |||| || || ||| | ||||||||| ||||||||
seq2  CAAATGGGTTGGAAAACAACCCGGTAAGGAATTTTCTTTACGGGTAATTG  250

seq1  ATGGAGAAAGGGCCCCACCCACCGTGGGAGATGCCATCCCAGTGTTCTTC  300
      | ||| |||||||||| ||| ||| |||| ||||| |||||| |||||||
seq2  AGGGAAAAAGGGCCCCCCCCCCCGGGGGAAATGCCTTCCCAGGGTTCTTC  300

seq1  CGTGACCTCTGCTTCAGTTCCTGCCTTCAGTTCCTGCCTTGGCTTTCCTC  350
      || |||||| |||||| |||| |||||||||||| |||| || |||||||
seq2  CGGGACCTCGGCTTCATTTCCGGCCTTCAGTTCCGGCCTGGGTTTTCCTC  350

seq1  AATGGACTGTGATATGTAAACCGAATAAACCCTCTCACTCCTCAGTTGCT  400
      || |||| |||||||||||||| ||||| ||||||||||||||| | |||
seq2  AAGGGACGGTGATATGTAAACCAAATAACCCCTCTCACTCCTCATTGGCT  400

seq1  TAAAACCAACTCGGGCTCTATTGTACAGAAATAGAAACCACACTAGGACC  450
      |||| |||||||||| ||||||||||| || || || |||||||||||||
seq2  TAAACCCAACTCGGGTTCTATTGTACAAAATTAAAACCCACACTAGGACC  450

seq1  CACTTCTGTATCTATTGCCACTTTGTGCCCTGTGTCATCTCAGGACCCTG  500
      | || ||||||| ||| || ||| ||| |||| ||| |||||||| ||||
seq2  C-CTCCTGTATCAATT-CCCCTTGGTG-CCTGGGTCTTCTCAGGA-CCTG  496

seq1  TCAGCATTACTCCTTGCAGGAACTTCAACCTTCAGACTGTGAACTAAATA  550
      ||| |||| |||| |||||| ||||| |||||| | ||| | ||||||||
seq2  TCA-CATT-CTCC-TGCAGG-ACTTC-ACCTTC-GGCTG-GGACTAAATA  539

seq1  GGCCTCTTTTCTTAATAAGTGAGCCTGTACACGGCTTGACTCTGGGATGT  600
       ||| |||||| |||| |||||| ||| || |||||||||| ||||||||
seq2  -GCCCCTTTTC-TAAT-AGTGAG-CTGGACCCGGCTTGACTTTGGGATGT  585

seq1  CCCCCGAAGGCTCGTGCTTTGAGCAC  626
       ||||||| |||||||||||||||||
seq2  -CCCCGAA-GCTCGTGCTTTGAGCAC  609

seq1: chr12_78201523_78202668
seq2: B6Ng01-169P21.g_68_1210 (reverse)

seq1  TTAGGCTATGTGAAACCCCATTTCAAAAACCAGACAGGAA-CCAAGAGTA  49
      ||||||||||||||| |||||| ||||| ||||||||||| |||||||||
seq2  TTAGGCTATGTGAAA-CCCATTCCAAAACCCAGACAGGAACCCAAGAGTA  49

seq1  AAAGAACTTAGGCCAGATAAGCATTGTT-CTAGTTCTG-CTTGTAGGTTA  97
      |||| |||||| | | |||||||||||| ||||||||| |||||| ||||
seq2  AAAG-ACTTAGCCAAAATAAGCATTGTTCCTAGTTCTGCCTTGTA-GTTA  97

seq1  CAGATGAGAAGTTACTTCTCCTAGCCACACATGGGAATGCCCAGTATATA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGAAGTTACTTCTCCTAGCCACACATGGGAATGCCCAGTATATA  147

seq1  GGACTGTTATGAGAACTAAGGAAAATATGACAGAAGAAGTGCTCTACTCT  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  GGACTGTTATGAG-ACTAAGGAAAATATGACAGAAGAAGTGCTCTACTC-  195

seq1  TAGTTACTGGCAGCTTTTATTACTACGGGGAACTTTCAGTGCAGCAGAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGGCAGCTTTTATTACTACGGGGAACTTTCAGTGCAGCAGAGA  245

seq1  GAAGGGACAGTCCTTACCGCTCACTTGAAAAACCCTTTCTGAAAAGGGAG  297
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GAAGGGACAGTCC-TACCGCTCACTTGAAAAACCCTTTCTGAAAAGGAAG  294

seq1  ATAGGAAGAGCTGCTCAGAATGTGTGGCTCAGAATGAAAGATAACATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAGCTGCTCAGAATGTGTGGCTCAGAATGAAAGATAACATTTT  344

seq1  CATAGGTGGGAGACAGTGAGGGTATGGATTCTCTAGGAGCCGACTGTGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGGGAGACAGTGAGGGTATGGATTCTCTAGGAGCCGACTGTGCA  394

seq1  TGGGAACCATCTGAGACACCTAAGACAACTGCAGAAAGTCTTGAAGGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCATCTGAGACACCTAAGACAACTGCAGAAAGTCTTGAAGGCAT  444

seq1  CTAGAAGGACAGGTGAGAGATGGAGTCAGGGAGAGGATGTGTGGTGTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGACAGGTGAGAGATGGAGTCAGGGAGAGGATGTGTGGTGTGGA  494

seq1  GGAGTGATGCTGGGTAGGTTACAAACTGGAGGTGGCTGATGGGGCTGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATGCTGGGTAGGTTACAAACTGGAGGTGGCTGATGGGGCTGTAA  544

seq1  GGTAGCAATAGCCTGGAAGCTAAGGGCTCTTGCAGTAGAGGAAATAAGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAATAGCCTGGAAGCTAAGGGCTCTTGCAGTAGAGGAAATAAGTC  594

seq1  CTGCACTAGTATCATTAACGAATACTGTGATCTTGGACAGTAGTCCAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTAGTATCATTAACGAATACTGTGATCTTGGACAGTAGTCCAGGT  644

seq1  ATTTTTCAAACACCAGAAAATCAACATCCAAGCTCAAGGCATCAAGTAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAACACCAGAAAATCAACATCCAAGCTCAAGGCATCAAGTAGC  694

seq1  TTGGGTGTTTGGTGAAAACCCATTTTCTTGTTCCTAAATAGAGCTTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTTTGGTGAAAACCCATTTTCTTGTTCCTAAATAGAGCTTTCTT  744

seq1  GCTGTGTTCTCACAGAATGGGAGCAAGGGGGCTGTGTGGAGTCTCTTACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCTCACAGAATGGGAGCAAGGGGGCTGTGTGGAGTCTCTTACA  794

seq1  TAGTCACTACCATGACTGAGTTATCCTCCCAAAGTCCCACCCAAATACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTACCATGACTGAGTTATCCTCCCAAAGTCCCACCCAAATACCA  844

seq1  ATGTCTTTCAGGTAGGACTTCAGTGTGTGAATTTTGGAAGGGCACAGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCAGGTAGGACTTCAGTGTGTGAATTTTGGAAGGGCACAGGCA  894

seq1  CTTAGAATATGGCAGTCCCTCACCCCAGGAGCCTGTGGGATTTTGTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATATGGCAGTCCCTCACCCCAGGAGCCTGTGGGATTTTGTTTGT  944

seq1  TTTTTGCTTGTTTGTTTTTTGACTATGTAATATAGCTAGTGATACCTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTGTTTGTTTTTTGACTATGTAATATAGCTAGTGATACCTCCT  994

seq1  TCTCCTTAGGACTTTCTATGAGGAATTCATTTAATAATGGCATGGATTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAGGACTTTCTATGAGGAATTCATTTAATAATGGCATGGATTGC  1044

seq1  ATTTTAAAAGTTCACTAAATACTAGCCAACATTATTGTTGTTGTAATAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGTTCACTAAATACTAGCCAACATTATTGTTGTTGTAATAAT  1094

seq1  AATTACTATAGAAACTGCACTTGGACATTTTACTTCTACAGAAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATAGAAACTGCACTTGGACATTTTACTTCTACAGAAGAATTC  1143