BAC Information

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BAC

Clone NameB6Ng01-171E22
Chromosome12 (Build37)
Map Location 59,194,213 - 59,302,592
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171E22.bB6Ng01-171E22.g
ACCGA000229GA000230
length1,1181,082
definitionB6Ng01-171E22.b B6Ng01-171E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,194,213 - 59,195,353)(59,301,504 - 59,302,592)
sequence
gaattcatagggataccgtgtttgatgtgttaggtaaaagccatagtagt
cttaagttgtgagtaaattactggcctgtaccctaactattgcaggtaat
taatagtcacattttaataatttattggttgccaatattttttccaagag
aggaagaattaacattctaaaagtcattatccccttaacagctatttaat
catctctagttagctaattaacgactgttacatcattgttttattcatca
tgaatttgtcttacaaatataatttttccatgattggataatcgcacagt
tgttgtcagtcagtctctgaacacttggtaactcaagaggcagctgcaat
gaagtgagaaatttattttttcattctgaaagactgagatctggactgga
ccacagggaaaaaaatcattgcttcttttaaaagacaagcctctcccctt
ttccctgacaggccagctcaaggactgcatgacaatgaactatgatggca
atggttacaatttattttattttattaagtagaagagaaacagaaacaca
tagtgaaacactttcttgtgttaatttgaaagtcctctatgaagccaggc
agtgatgcacagaggcagaggcaggcagatttctgagtttaagaccagcc
tggtctacagagttagttccaggacagccagggctatatagagaaaccct
gtctcaaaaacaaaacaaacaaacaaaaaaaaacaaaaacaaaaaaaaat
tcctctatgaagccccacacttgtaattccaagctgaggtggcagaatca
cttgggtccaagagttcaaaaccagtctgagcaacattgtgatatgctat
cacagattcaaagaaaataggtattagtaataataaaacttcatcgtaat
tatttgacaataatgattattttatattctttagcctgattcttggaaga
acaagtatttacagtacttcaactttacactatgtgtgaactttaggctt
tcttttattcttgtatcatttctcctctagaatgatagctgcctggaaag
tagaagtaattgtgtcgattttgtgtataataggtaatgtgctattggca
ataaagctgacagcagct
gaattctgaattcacacttgcatataaaaataatgtaaactcaaattacc
ctattttccttttacaattcttttgatgacaagcttttaaacaactagaa
tgtcttagagatggatagaatcaattttcacacctgtaatgtttcagctt
ttactatcttgaaaaggtctaactcttcttaggaaaacacatactcttaa
aatccaccagggggagatttcatcactgagaacttgaataggaaagacta
ttcagctgaatttcaagtgacagtttcttgaactaagcctacattttaag
ttatgtcttgataggttactgaaacaattcttgatgtgctgagatctaga
atgagtgactttgggaactgatggcatatttttgggtcttgttagaggat
gcaggtggtggctgtgtgtttcagggagaaaggctatttggttgtagatg
aaatgagtgcttatgtcttcagggaaaggaccagagaaaagagtaattag
aggtcattcccactacaagtaatgtcaacagtttctggttttgagagatg
cataaaagtctgatcttcttccttgggaaagtttaagacttagaatacta
ttgaaatactttgtaagttgataaagaagaaacaaaatatgtatgaagaa
tatttttatggcaaactgatttatttgtgaaggcatggcattatatcaga
aatccttggataaccaacattgctgaggtgcgatcatctgtatgcatcat
attctagtaagaattttataaacagataatctctctgtaagggtcttgca
aaaaagatttgaagtccaaggtcatttttgagattcaattaaccactgat
atgtgcagacatttccccaatagagagcaagcagcttcagtttcataggt
ttcccactctagacatagacacgagagggaaatgtcacaggcactgaccc
cggcttagcctccctcctatctgccacatggattggtcattttaaaagta
gatgacccagttactctacaatagtccaaagctttttgtttcaagagtcc
tccacacacatatctctgttctggtgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59194213_59195353
seq2: B6Ng01-171E22.b_44_1161

seq1  GAATTCATAGGGATACCGTGTTTGATGTGTTAGGTAAAAGCCATAGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGATACCGTGTTTGATGTGTTAGGTAAAAGCCATAGTAGT  50

seq1  CTTAAGTTGTGAGTAAATTACTGGCCTGTACCCTAACTATTGCAGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTGTGAGTAAATTACTGGCCTGTACCCTAACTATTGCAGGTAAT  100

seq1  TAATAGTCACATTTTAATAATTTATTGGTTGCCAATATTTTTTCCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCACATTTTAATAATTTATTGGTTGCCAATATTTTTTCCAAGAG  150

seq1  AGGAAGAATTAACATTCTAAAAGTCATTATCCCCTTAACAGCTATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATTAACATTCTAAAAGTCATTATCCCCTTAACAGCTATTTAAT  200

seq1  CATCTCTAGTTAGCTAATTAACGACTGTTACATCATTGTTTTATTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAGTTAGCTAATTAACGACTGTTACATCATTGTTTTATTCATCA  250

seq1  TGAATTTGTCTTACAAATATAATTTTTCCATGATTGGATAATCGCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGTCTTACAAATATAATTTTTCCATGATTGGATAATCGCACAGT  300

seq1  TGTTGTCAGTCAGTCTCTGAACACTTGGTAACTCAAGAGGCAGCTGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGTCAGTCTCTGAACACTTGGTAACTCAAGAGGCAGCTGCAAT  350

seq1  GAAGTGAGAAATTTATTTTTTCATTCTGAAAGACTGAGATCTGGACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGAAATTTATTTTTTCATTCTGAAAGACTGAGATCTGGACTGGA  400

seq1  CCACAGGGAAAAAAATCATTGCTTCTTTTAAAAGACAAGCCTCTCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGAAAAAAATCATTGCTTCTTTTAAAAGACAAGCCTCTCCCCTT  450

seq1  TTCCCTGACAGGCCAGCTCAAGGACTGCATGACAATGAACTATGATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGACAGGCCAGCTCAAGGACTGCATGACAATGAACTATGATGGCA  500

seq1  ATGGTTACAATTTATTTTATTTTATTAAGTAGAAGAGAAACAGAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACAATTTATTTTATTTTATTAAGTAGAAGAGAAACAGAAACACA  550

seq1  TAGTGAAACACTTTCTTGTGTTAATTTGAAAGTCCTCTATGAAGCCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAACACTTTCTTGTGTTAATTTGAAAGTCCTCTATGAAGCCAGGC  600

seq1  AGTGATGCACAGAGGCAGAGGCAGGCAGATTTCTGAGTTTAAGACCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCACAGAGGCAGAGGCAGGCAGATTTCTGAGTTTAAGACCAGCC  650

seq1  TGGTCTACAGAGTTAGTTCCAGGACAGCCAGGGCTATATAGAGAAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTTAGTTCCAGGACAGCCAGGGCTATATAGAGAAACCCT  700

seq1  GTCTCAAAAACAAAACAAACAAACAAAAAAAAACAAAAACAAAAAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAACAAAACAAACAAACAAAAAAAAACAAAAACAAAAAAAAAT  750

seq1  TCCTCTATGAAGCCCCACACTTGTAATTCCAAGCTGAGGTGGCAGAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATGAAGCCCCACACTTGTAATTCCAAGCTGAGGTGGCAGAATCA  800

seq1  CTTGGGTCCAAGAGTTCAAAACCAGTCTGAGCAACATTGTGATATGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCCAAGAGTTCAAAACCAGTCTGAGCAACATTGTGATATGCTAT  850

seq1  CACAGATTCAAAGAAAATAGGTATTAGTAATAATAAAACTTCATCGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCAAAGAAAATAGGTATTAGTAATAATAAAACTTCATCGTAAT  900

seq1  TATTTGACAATAAATGATTATTTTATATTCTTTAGCCTGATTCTTGGAAG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACAAT-AATGATTATTTTATATTCTTTAGCCTGATTCTTGGAAG  949

seq1  AACAAGTTATTTACAGTACTTCAAACTTTACACTATGTTGTGAACTTTAG  1000
      |||||| ||||||||||||||| |||||||||||||| ||||||||||||
seq2  AACAAG-TATTTACAGTACTTC-AACTTTACACTATG-TGTGAACTTTAG  996

seq1  GCTTTCTTTTAATTCTTGTATCAATTTCTTCCCTCTAGAAATTGATTAGG  1050
      |||||||||| ||||||||||| ||||||  |||||||||  ||||   |
seq2  GCTTTCTTTT-ATTCTTGTATC-ATTTCT--CCTCTAGAA--TGAT--AG  1038

seq1  CTGCCTTGGAAAGGGAGAAGTTATTTGTGTCGATTTTTGTGTTATAATAA  1100
      ||||| |||||| | ||||| || ||||||||| ||||||| |||||| |
seq2  CTGCC-TGGAAA-GTAGAAG-TAATTGTGTCGA-TTTTGTG-TATAAT-A  1082

seq1  GGTAATGTGCTTTATTTGGCAATAAAAGCTGAACAGCAGCT  1141
      |||||||||||    |||||||| ||||||| |||||||||
seq2  GGTAATGTGCT---ATTGGCAAT-AAAGCTG-ACAGCAGCT  1118

seq1: chr12_59301504_59302592
seq2: B6Ng01-171E22.g_67_1148 (reverse)

seq1  TACACTACACCAGAACAGAGATATGTGTGTG--AGACTCTTGAAAACAAA  48
      |||| ||||||||||||||||||||||||||   |||||||||||  |||
seq2  TACA-TACACCAGAACAGAGATATGTGTGTGGAGGACTCTTGAAACAAAA  49

seq1  AGCTTTGACTTATTTGTAGAAGGTACTGTGTCATTCTACTTTTTTAAAAA  98
      |||||||   || |||||| ||  |||| |||| |||||||||   ||||
seq2  AGCTTTGGACTA-TTGTAG-AGTAACTGGGTCA-TCTACTTTT---AAAA  93

seq1  TGACCATTCCATGTGGCAGATAGGGAGGGGGCT-AGGCGGGGTCAGTGCT  147
      |||||| |||||||||||||||||  || |||| || |||||||||||| 
seq2  TGACCAATCCATGTGGCAGATAGGAGGGAGGCTAAGCCGGGGTCAGTGCC  143

seq1  TGTGACATTTTCCTCTCGTGTCTATGTTCTAGAGTGGGAAACCTATGAAA  197
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TGTGACATTTCCCTCTCGTGTCTATG-TCTAGAGTGGGAAACCTATGAAA  192

seq1  CTGAAGCTGCTTTGCTCTCTATTGGGGAAATGTCTGCACATATCAGTGGT  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTGC-TTGCTCTCTATTGGGGAAATGTCTGCACATATCAGTGGT  241

seq1  TAATTGAATCTCAAAAATGACCTTGGACTTCAAATCTTTTTTTGCAAGAC  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATTGAATCTCAAAAATGACCTTGGACTTCAAATC-TTTTTTGCAAGAC  290

seq1  CCTTACAGAGAGATTATCTGTTTATAAAATTCTTACTAGAATATGATGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGAGAGATTATCTGTTTATAAAATTCTTACTAGAATATGATGCA  340

seq1  TACAGATGATCGCACCTCAGCAATGTTGGTTATCCAAGGATTTCTGATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGATCGCACCTCAGCAATGTTGGTTATCCAAGGATTTCTGATAT  390

seq1  AATGCCATGCCTTCACAAATAAATCAGTTTGCCATAAAAATATTCTTCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATGCCTTCACAAATAAATCAGTTTGCCATAAAAATATTCTTCAT  440

seq1  ACATATTTTGTTTCTTCTTTATCAACTTACAAAGTATTTCAATAGTATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGTTTCTTCTTTATCAACTTACAAAGTATTTCAATAGTATTC  490

seq1  TAAGTCTTAAACTTTCCCAAGGAAGAAGATCAGACTTTTATGCATCTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTAAACTTTCCCAAGGAAGAAGATCAGACTTTTATGCATCTCTC  540

seq1  AAAACCAGAAACTGTTGACATTACTTGTAGTGGGAATGACCTCTAATTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAAACTGTTGACATTACTTGTAGTGGGAATGACCTCTAATTAC  590

seq1  TCTTTTCTCTGGTCCTTTCCCTGAAGACATAAGCACTCATTTCATCTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTGGTCCTTTCCCTGAAGACATAAGCACTCATTTCATCTACA  640

seq1  ACCAAATAGCCTTTCTCCCTGAAACACACAGCCACCACCTGCATCCTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAGCCTTTCTCCCTGAAACACACAGCCACCACCTGCATCCTCTA  690

seq1  ACAAGACCCAAAAATATGCCATCAGTTCCCAAAGTCACTCATTCTAGATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCCAAAAATATGCCATCAGTTCCCAAAGTCACTCATTCTAGATC  740

seq1  TCAGCACATCAAGAATTGTTTCAGTAACCTATCAAGACATAACTTAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACATCAAGAATTGTTTCAGTAACCTATCAAGACATAACTTAAAAT  790

seq1  GTAGGCTTAGTTCAAGAAACTGTCACTTGAAATTCAGCTGAATAGTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTAGTTCAAGAAACTGTCACTTGAAATTCAGCTGAATAGTCTTT  840

seq1  CCTATTCAAGTTCTCAGTGATGAAATCTCCCCCTGGTGGATTTTAAGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAAGTTCTCAGTGATGAAATCTCCCCCTGGTGGATTTTAAGAGT  890

seq1  ATGTGTTTTCCTAAGAAGAGTTAGACCTTTTCAAGATAGTAAAAGCTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTCCTAAGAAGAGTTAGACCTTTTCAAGATAGTAAAAGCTGAA  940

seq1  ACATTACAGGTGTGAAAATTGATTCTATCCATCTCTAAGACATTCTAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAGGTGTGAAAATTGATTCTATCCATCTCTAAGACATTCTAGTT  990

seq1  GTTTAAAAGCTTGTCATCAAAAGAATTGTAAAAGGAAAATAGGGTAATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAGCTTGTCATCAAAAGAATTGTAAAAGGAAAATAGGGTAATTT  1040

seq1  GAGTTTACATTATTTTTATATGCAAGTGTGAATTCAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACATTATTTTTATATGCAAGTGTGAATTCAGAATTC  1082