BAC Information

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BAC

Clone NameB6Ng01-173J18
Chromosome12 (Build37)11 (Build37)
Map Location 13,870,051 - 13,870,23241,312,950 - 41,313,942
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J18.bB6Ng01-173J18.g
ACCGA001909GA001910
length8151,000
definitionB6Ng01-173J18.b B6Ng01-173J18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,870,051 - 13,870,232)(41,312,950 - 41,313,942)
sequence
gaattcagttcctctacaagacactgttgttttactagttgcttgaacaa
gctgttctctctactgagacatcatttcttcgcttactagcaagccacac
tctccatcaccaacttaggcaaagtttctttctctttgtactggagaacc
tactctcaagtgaatctcagatttcctttttctccctttataccattagt
tcacacattatagttatatcaacaacctcaatcactgtctatactagatc
tttgcttttcaaaaacagggatagtgttttgtctttgatttcgtggttct
gggatgaatcagtgtctataaaatgatgagcactttacatgagtaggttt
ctttcttttttttaaatttttttattttaattaggtattttcttcattta
catttccaatgctatcccaaaagtcccccatacctcccccactccactac
ccaccaactcccacttcttggcccaggcatttcttttttttttttttaat
taatttttttaaattaggtattttccttgtttacattttcaatgctatcc
caaaggtcccccatccccccccccatcccctacccacccactgccccttt
tgggccctggtgttcccctgtactagggcatataaagtttgcaagtccaa
tggacctctctttgcagtgatggccaactaggccatcttttgatacatat
gcaactaaaagacaagagctcccgggtactggttagttcatattgttgtt
ccaccctatagggttgcagttccctttagctccctttagtttctctagct
cctccattgggggcc

gaattccaagatgcctatgtcttgttgagtgaaaagaaaatttccagtgt
tcagtccattgtccctactcttgaaattgctaatgctcatcggaagccat
tggtcataatcgccgaagacgttgacggagaagctctaagcacgatggtt
ttgaacaggctaaaagttggtcttcaggttgtggcagtcaaagctccagg
atttggggacaataggaagaaccagcttaaagatatggctattgctactg
gtggtgcggtgtttggagaagaggggttgaatctaaatcttgaagatgtt
caagctcatgacttaggaaaagttggggaggtcattgtcaccaaagatga
tgccatgcttttgaaaggaaaaggtgacaaagctcacattgaaaaacgta
ttcaagaaatcactgagcagctagacatcacaactagtgaatatgaaaag
gaaaagctgaatgagcgacttgctaaactttcagatggagtagctgtgtt
gaaggttggaggaacaagtgatgttgaagtgaatgaaaaaaaagacagag
ttactgacgctctcaatgctacaagagcagctgttgaagaaggcattgtt
ctaggagggggctgcgctctgcttcggtgcatcccagccttggattcatt
aaagcctgctaatgaagaccagaaaataggtatagaaattattaaaagag
cacttaaaattcctgcaatgacgattgctaagaatgcaggtgttgaagga
tctttgatagttgagaaaattctgcagagttcctcagaagttggttatga
cgccaggcttggagattttgtgaacatggtggaaaagggatcaattgatc
caacaaaggttgtagaactgccttactggatgctgctggagttgcctcct
ttgctaactacagccgaaggctgtagtgacaggaaattcctaaagaagag
agaccctggaaatggggtggccatggggtgggcatgggaaggggctatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13870051_13870232
seq2: B6Ng01-173J18.b_138_489

seq1  --------------------------------------------------  0
                                                        
seq2  GCCACACTCTCCATCACCAACTTAGGCAAAGTTTCTTTCTCTTTGTACTG  50

seq1  --------------------------------------------------  0
                                                        
seq2  GAGAACCTACTCTCAAGTGAATCTCAGATTTCCTTTTTCTCCCTTTATAC  100

seq1  -------------------------GCCACACTCTCCATCACTGACAAGG  25
                                | |||  ||| ||||||| | |  
seq2  CATTAGTTCACACATTATAGTTATATCAACAACCTCAATCACTGTCTATA  150

seq1  C---AACTTTATTTAT-----------TTATTTATTTAT-TTTTATTT--  58
      |   | ||||  || |            || |  ||| | ||| ||||  
seq2  CTAGATCTTTGCTTTTCAAAAACAGGGATAGTGTTTTGTCTTTGATTTCG  200

seq1  ---TT--------------TTTTTAT-AATTTATTA----TTTA------  80
         ||              | | ||| || | || |    ||||      
seq2  TGGTTCTGGGATGAATCAGTGTCTATAAAATGATGAGCACTTTACATGAG  250

seq1  ----TTTATTTATTTATTT---ATTTTTTCCATTTTTTATTAGGTATTTA  123
          ||| ||| ||| |||   |||||||    |||| ||||||||||| 
seq2  TAGGTTTCTTTCTTTTTTTTAAATTTTTT--TATTTTAATTAGGTATTTT  298

seq1  ACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCTCCCAC  173
        |||||||||||||||||||||| ||||||||||||||||     || |
seq2  CTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATA-----CCTC  343

seq1  CCCCACTCC  182
      |||||||||
seq2  CCCCACTCC  352


seq1: chr11_41312950_41313942
seq2: B6Ng01-173J18.g_69_1067

seq1  GAATTCCAAGATGCCTATGTCTTGTTGAGTGAAAAGAAAATTTCCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATGCCTATGTCTTGTTGAGTGAAAAGAAAATTTCCAGTGT  50

seq1  TCAGTCCATTGTCCCTACTCTTGAAATTGCTAATGCTCATCGGAAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCATTGTCCCTACTCTTGAAATTGCTAATGCTCATCGGAAGCCAT  100

seq1  TGGTCATAATCGCCGAAGACGTTGACGGAGAAGCTCTAAGCACGATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAATCGCCGAAGACGTTGACGGAGAAGCTCTAAGCACGATGGTT  150

seq1  TTGAACAGGCTAAAAGTTGGTCTTCAGGTTGTGGCAGTCAAAGCTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGGCTAAAAGTTGGTCTTCAGGTTGTGGCAGTCAAAGCTCCAGG  200

seq1  ATTTGGGGACAATAGGAAGAACCAGCTTAAAGATATGGCTATTGCTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGACAATAGGAAGAACCAGCTTAAAGATATGGCTATTGCTACTG  250

seq1  GTGGTGCGGTGTTTGGAGAAGAGGGGTTGAATCTAAATCTTGAAGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCGGTGTTTGGAGAAGAGGGGTTGAATCTAAATCTTGAAGATGTT  300

seq1  CAAGCTCATGACTTAGGAAAAGTTGGGGAGGTCATTGTCACCAAAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCATGACTTAGGAAAAGTTGGGGAGGTCATTGTCACCAAAGATGA  350

seq1  TGCCATGCTTTTGAAAGGAAAAGGTGACAAAGCTCACATTGAAAAACGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCTTTTGAAAGGAAAAGGTGACAAAGCTCACATTGAAAAACGTA  400

seq1  TTCAAGAAATCACTGAGCAGCTAGACATCACAACTAGTGAATATGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAATCACTGAGCAGCTAGACATCACAACTAGTGAATATGAAAAG  450

seq1  GAAAAGCTGAATGAGCGACTTGCTAAACTTTCAGATGGAGTAGCTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGAATGAGCGACTTGCTAAACTTTCAGATGGAGTAGCTGTGTT  500

seq1  GAAGGTTGGAGGAACAAGTGATGTTGAAGTGAATGAAAAAAAAGACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGGAGGAACAAGTGATGTTGAAGTGAATGAAAAAAAAGACAGAG  550

seq1  TTACTGACGCTCTCAATGCTACAAGAGCAGCTGTTGAAGAAGGCATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACGCTCTCAATGCTACAAGAGCAGCTGTTGAAGAAGGCATTGTT  600

seq1  CTAGGAGGGGGCTGCGCTCTGCTTCGGTGCATCCCAGCCTTGGATTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGGGGCTGCGCTCTGCTTCGGTGCATCCCAGCCTTGGATTCATT  650

seq1  AAAGCCTGCTAATGAAGACCAGAAAATAGGTATAGAAATTATTAAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGCTAATGAAGACCAGAAAATAGGTATAGAAATTATTAAAAGAG  700

seq1  CACTTAAAATTCCTGCAATGACGATTGCTAAGAATGCAGGTGTTGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAATTCCTGCAATGACGATTGCTAAGAATGCAGGTGTTGAAGGA  750

seq1  TCTTTGATAGTTGAGAAAATTCTGCAGAGTTCCTCAGAAGTTGGTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAGTTGAGAAAATTCTGCAGAGTTCCTCAGAAGTTGGTTATGA  800

seq1  CGCCAGGCTTGGAGATTTTGTGAACATGGTGGAAAAAGGGATC-ATTGAT  849
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CGCCAGGCTTGGAGATTTTGTGAACATGGTGG-AAAAGGGATCAATTGAT  849

seq1  CCAACAAAGGTTGTAAGAACTGCCTTACTGGATGCTGCTGGAGTGGCCTC  899
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CCAACAAAGGTTGT-AGAACTGCCTTACTGGATGCTGCTGGAGTTGCCTC  898

seq1  C-TTGCTAACTACAGCCGAA-GCTGTAGTGACA-GAAATTCCTAAAGAAG  946
      | |||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CTTTGCTAACTACAGCCGAAGGCTGTAGTGACAGGAAATTCCTAAAGAAG  948

seq1  AGAAGGACCCTGG-AATGGG--TGCAATGGG--TGGCATGGG-AGGGGGT  990
      |||  |||||||| ||||||   || |||||   |||||||| ||||| |
seq2  AGA--GACCCTGGAAATGGGGTGGCCATGGGGTGGGCATGGGAAGGGGCT  996

seq1  ATG  993
      |||
seq2  ATG  999


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