BAC Information

Click to search

BAC

Clone NameB6Ng01-173K22
Chromosome12 (Build37)
Map Location 43,116,373 - 43,252,774
singlet/doubletdoublet
Overlap geneEG638533
Upstream geneLrrn3, Immp2l
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K22.bB6Ng01-173K22.g
ACCGA001965GA001966
length1,1551,036
definitionB6Ng01-173K22.b B6Ng01-173K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,251,595 - 43,252,774)(43,116,373 - 43,117,419)
sequence
gaattcactcctagtcactcccattcggggtgtaatagtggggtgatggg
caagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtcac
gctgcgggttataaaagcagcgccattttcccggtttgggatcttcctga
gaagcaagcaataaagctcttgtcgcggaagattctggtttgttgtgtct
ttctcgccggtcgagcgggatgcaatactacctgaagtatttaatatttg
tgtagaattacaagtgttatttttaaattagtcatggctaagttgtctat
agaaatgctatttatttttgcatattagacatgtggtattaacaaactca
gtgattaaaactggtagtttttttgcaattgggttttagtcagccattca
tcttctattgtcacccttctatttcttccagacctgttcctccatggctc
actgccctctccatctccactgcagttctgaagagaaatggacaaggtag
tatctcatcttatgtgctaacttagtcctagaggaggaaaacagccagtt
tcatcgtgaaaatggtgtcagaaataggctctgcttaacttttattatca
gattgaaaataagtctcttagaacctagttttctgagtattttatcatga
ataaacattgaatttgtaaaataattttttactcataggcatatacacat
tcatttcctttttaaatcagtgattaaggatattacattgacttatttaa
gccaatcgtattattcagatcaacccaacttgagcatgcaccatctttat
agtcacattcacaaaccactggattcaatcttttgatgacctcttctaat
tatttgtgcatcattctttctttgcttttgtaagaatttgaatggggtag
ttttatttatttttttaaatatttaagaaactcacttgatgaaattcttt
cacatgatttaggtacatgttaaaagtgtggaataagttcatgaccattt
agtaagtatgtcagtacttattttatatcatcactttcattatacaaatg
cgatatacttctaaatattcctctatattaatggacacttgatgatatcc
ttatatgaatactagatgactcatccgatttgtactctagtatatgctaa
ttaac

gaattctgttaggataggagaaaaactatacttctaaacctgttactagg
tcagcctgtatgctgttagcattgtttagatacaatgaacattttgtcat
gttaactgcatacatattatttccttccacaagaattaattttggatgtt
tgatattttttatgactaaagttaaagtcaaaaagaattgctagtatgag
tgacttagaaatattaaatttacagaaattaaatggtcatcacaggtaat
aaattatcttttgctgtttttttttttttttaaagctattgagaaagaag
acaaagtaggtaaaatgtgactaaaaatgtgactttttggaaccagaatt
agaagaggcaaattatctgtttatgctataaagtacgtgacttcatcttt
aaaatttccctacaatagtgcatatgataattctatttctatacatatgt
tgtacataaattgcttaaaacttttaaatgatatggtatatataataaaa
atctatggaaataacacgatatgtatattgtgtaaatatatcctgagtaa
attaatatatcatattttctatacttgtgctatatgttactatacacaca
catatatatacataaaacctaggcaaatgcttaatttttattatatgtgt
tttattagtttttaaagtgaagtgtatgttattacagcatgcagtattat
aaatagtaaattattttttgtaaattttaatattcctaagccatccatac
tagcaattcttttgaccatatatctttccttctgttacctgagtgttaca
tgtggtagaattaaaattgccactaaggacttacatagtattttctgttt
ctttgtttgtttgttttggaaattaaaatgtaagtatatcatttccactc
tttccttccttcaaccctttccttttttcgttttatttatttgtaaatta
tttaattacatcatacattgcctcttctcggttaccccccccccccacac
acacacatagacacattcctcaccacatccctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_43251595_43252774
seq2: B6Ng01-173K22.b_48_1202 (reverse)

seq1  GTTAATAAGCATATACTAGAGTTTACAAAT---ATGAATGAAGATAAATT  47
      |||||| ||||||||||||||  |||||||   |||| | |         
seq2  GTTAATTAGCATATACTAGAG--TACAAATCGGATGAGTCA---------  39

seq1  TTTAGTATTCATAATAAGGGGATATCATCAAGTGTCCCATAAATTATAAG  97
      | |||||||||| ||||  ||||||||||||||||||  |||  ||||  
seq2  TCTAGTATTCAT-ATAA--GGATATCATCAAGTGTCCATTAA--TATAGA  84

seq1  AGAATATTTAGGAAGTATTATCGGCATTTTGTATAAATGAAGTTGATGAT  147
       ||||||||| |||||| |||| ||| ||||||| ||||||  |||||||
seq2  GGAATATTTA-GAAGTA-TATC-GCA-TTTGTAT-AATGAAAGTGATGAT  129

seq1  ATAAAATAAAATTACTGAACAATACTTTACTAAATGGTCATGAACTTATT  197
      |||||||  || ||||||   |||| ||||||||||||||||||||||||
seq2  ATAAAAT--AAGTACTGA--CATAC-TTACTAAATGGTCATGAACTTATT  174

seq1  CCACACTTTTAAACATGTACCTAAATCATGTGAAAGAATTTCATCAAGTG  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTTT-AACATGTACCTAAATCATGTGAAAGAATTTCATCAAGTG  223

seq1  AGTTTTCTTAAATATTTAAAAAAATAAATAAAACTACCCCATTCAAATTC  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTTCTTAAATATTTAAAAAAATAAATAAAACTACCCCATTCAAATTC  272

seq1  TTACAAAAGCAAAGAAAGAATGATGCACAAATAATTAGAAGAGGTCATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAGCAAAGAAAGAATGATGCACAAATAATTAGAAGAGGTCATCA  322

seq1  AAAGATTGAATCCAGTGGTTTGTGAATGTGACTATAAAGATGGTGCATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGAATCCAGTGGTTTGTGAATGTGACTATAAAGATGGTGCATGC  372

seq1  TCAAGTTGGGTTGATCTGAATAATACGATTGGCTTAAATAAGTCAATGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGGGTTGATCTGAATAATACGATTGGCTTAAATAAGTCAATGTA  422

seq1  ATATCCTTAATCACTGATTTAAAAAGGAAATGAATGTGTATATGCCTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTAATCACTGATTTAAAAAGGAAATGAATGTGTATATGCCTATG  472

seq1  AGTAAAAAATTATTTTACAAATTCAATGTTTATTCATGATAAAATACTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAATTATTTTACAAATTCAATGTTTATTCATGATAAAATACTCA  522

seq1  GAAAACTAGGTTCTAAGAGACTTATTTTCAATCTGATAATAAAAGTTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAGGTTCTAAGAGACTTATTTTCAATCTGATAATAAAAGTTAAG  572

seq1  CAGAGCCTATTTCTGACACCATTTTCACGATGAAACTGGCTGTTTTCCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTATTTCTGACACCATTTTCACGATGAAACTGGCTGTTTTCCTC  622

seq1  CTCTAGGACTAAGTTAGCACATAAGATGAGATACTACCTTGTCCATTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGACTAAGTTAGCACATAAGATGAGATACTACCTTGTCCATTTCT  672

seq1  CTTCAGAACTGCAGTGGAGATGGAGAGGGCAGTGAGCCATGGAGGAACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACTGCAGTGGAGATGGAGAGGGCAGTGAGCCATGGAGGAACAG  722

seq1  GTCTGGAAGAAATAGAAGGGTGACAATAGAAGATGAATGGCTGACTAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAGAAATAGAAGGGTGACAATAGAAGATGAATGGCTGACTAAAA  772

seq1  CCCAATTGCAAAAAAACTACCAGTTTTAATCACTGAGTTTGTTAATACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGCAAAAAAACTACCAGTTTTAATCACTGAGTTTGTTAATACCA  822

seq1  CATGTCTAATATGCAAAAATAAATAGCATTTCTATAGACAACTTAGCCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAATATGCAAAAATAAATAGCATTTCTATAGACAACTTAGCCAT  872

seq1  GACTAATTTAAAAATAACACTTGTAATTCTACACAAATATTAAATACTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTTAAAAATAACACTTGTAATTCTACACAAATATTAAATACTTC  922

seq1  AGGTAGTATTGCATCCCGCTCGACCGGCGAGAAAGACACAACAAACCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTATTGCATCCCGCTCGACCGGCGAGAAAGACACAACAAACCAGA  972

seq1  ATCTTCCGCGACAAGAGCTTTATTGCTTGCTTCTCAGGAAGATCCCAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCGCGACAAGAGCTTTATTGCTTGCTTCTCAGGAAGATCCCAAAC  1022

seq1  CGGGAAAATGGCGCTGCTTTTATAACCCGCAGCGTGACGTTTCAGCACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAATGGCGCTGCTTTTATAACCCGCAGCGTGACGTTTCAGCACCT  1072

seq1  GATATGGCGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGCGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATT  1122

seq1  ACACCCCGAATGGGAGTGACTAGGAGTGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  ACACCCCGAATGGGAGTGACTAGGAGTGAATTC  1155


seq1: chr12_43116373_43117419
seq2: B6Ng01-173K22.g_67_1102

seq1  GAATTCTGTTAGGATAGGAGAAAAACTATACTTCTAAACCTGTTACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAGGATAGGAGAAAAACTATACTTCTAAACCTGTTACTAGG  50

seq1  TCAGCCTGTATGCTGTTAGCATTGTTTAGATACAATGAACATTTTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTATGCTGTTAGCATTGTTTAGATACAATGAACATTTTGTCAT  100

seq1  GTTAACTGCATACATATTATTTCCTTCCACAAGAATTAATTTTGGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTGCATACATATTATTTCCTTCCACAAGAATTAATTTTGGATGTT  150

seq1  TGATATTTTTTATGACTAAAGTTAAAGTCAAAAAGAATTGCTAGTATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTTTATGACTAAAGTTAAAGTCAAAAAGAATTGCTAGTATGAG  200

seq1  TGACTTAGAAATATTAAATTTACAGAAATTAAATGGTCATCACAGGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGAAATATTAAATTTACAGAAATTAAATGGTCATCACAGGTAAT  250

seq1  AAATTATCTTTTGCTGTTTTTTTTTTTTTTTAAAGCTATTGAGAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTTTTGCTGTTTTTTTTTTTTTTTAAAGCTATTGAGAAAGAAG  300

seq1  ACAAAGTAGGTAAAATGTGACTAAAAATGTGACTTTTTGGAACCAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAGGTAAAATGTGACTAAAAATGTGACTTTTTGGAACCAGAATT  350

seq1  AGAAGAGGCAAATTATCTGTTTATGCTATAAAGTACGTGACTTCATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGCAAATTATCTGTTTATGCTATAAAGTACGTGACTTCATCTTT  400

seq1  AAAATTTCCCTACAATAGTGCATATGATAATTCTATTTCTATACATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCCTACAATAGTGCATATGATAATTCTATTTCTATACATATGT  450

seq1  TGTACATAAATTGCTTAAAACTTTTAAATGATATGGTATATATAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAAATTGCTTAAAACTTTTAAATGATATGGTATATATAATAAAA  500

seq1  ATCTATGGAAATAACACGATATGTATATTGTGTAAATATATCCTGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGAAATAACACGATATGTATATTGTGTAAATATATCCTGAGTAA  550

seq1  ATTAATATATCATATTTTCTATACTTGTGCTATATGTTACTATACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATATCATATTTTCTATACTTGTGCTATATGTTACTATACACACA  600

seq1  CATATATATACATAAAACCTAGGCAAATGCTTAATTTTTATTATATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATACATAAAACCTAGGCAAATGCTTAATTTTTATTATATGTGT  650

seq1  TTTATTAGTTTTTAAAGTGAAGTGTATGTTATTACAGCATGCAGTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTTTTTAAAGTGAAGTGTATGTTATTACAGCATGCAGTATTAT  700

seq1  AAATAGTAAATTATTTTTTGTAAATTTTAATATTCCTAAGCCATCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAATTATTTTTTGTAAATTTTAATATTCCTAAGCCATCCATAC  750

seq1  TAGCAATTCTTTTGACCATATATCTTTCCTTCTGTTACCTGAGTGTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTCTTTTGACCATATATCTTTCCTTCTGTTACCTGAGTGTTACA  800

seq1  TGTGGTAGAATTAAAATTGCCACTAAGGACTTACATAGTATTTTCTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGAATTAAAATTGCCACTAAGGACTTACATAGTATTTTCTGTTT  850

seq1  CTTTGTTTGTTTGTTTTGGAAATTAAAATGTAGGTATATCATTTCCACTC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTGTTTGTTTGTTTTGGAAATTAAAATGTAAGTATATCATTTCCACTC  900

seq1  TTTCCTTCCTTCAACCC-TTCCTTTTTTCGTTTTATTTATTTTGTTAATT  949
      ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
seq2  TTTCCTTCCTTCAACCCTTTCCTTTTTTCGTTTTATTTA-TTTGTAAATT  949

seq1  ATTTATTTACATTCCATACATTGCCCTCTCTCCGGTTACCCCCCCCCCCC  999
      ||||| ||||||  ||||||||| |||||   ||||||||||||||||  
seq2  ATTTAATTACAT--CATACATTG-CCTCTTCTCGGTTACCCCCCCCCC--  994

seq1  CACCACACACACACATAGACACATTTCCTCACCCCATTCCCCCTCAGC  1047
        ||||||||||||||||||||| ||||||||| |||   ||||||||
seq2  --CCACACACACACATAGACACA-TTCCTCACCACAT---CCCTCAGC  1036


| Home | SequenceCutter | Blast | Download |