BAC Information

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BAC

Clone NameB6Ng01-175E06
Chromosome12 (Build37)
Map Location 83,866,756 - 83,867,568
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneMap3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175E06.bB6Ng01-175E06.g
ACCGA003115GA003116
length1,117813
definitionB6Ng01-175E06.b B6Ng01-175E06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgagttccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtaaggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtccacgccgagatattttatatta
ttttgtggctattgagaagggtgttgtttccctaatttctttcctcagcc
tgttatctttgtgtagagaaggccattgacttgtttgagttatttattca
gctactcaccgagctgttatcaagttaggagtcctctgttgaaattctta
ggggtcactatatatcg

gaattcttcctaagatattttgtacacagcattcaactctgagcaaagag
ccagatctttcatttctctgagctttatggtaattttggcatcagaattc
tctggaacatttacagctttaaatattctgttccattgaactaccagatc
cataatttggggaacaagaagtatttttaaggcaataataataatgactt
agggatcagacatcagtctgatattaagttaccaacttttagtcaataaa
agttatttaaaagtaaatcatgggtataaaagttaattgtgaccaggtat
agtggtgcacacctttagtcccagcacttgagaggcagaggcagactgat
ctctgtgaattcaaggccagcctgttctacatggtgagttcaaagccagc
cagagctacatagttagaccctgcctcaaacaaacaaacaaacaaacaaa
gaggttgtgttttgcttcataaaaatcttttttccattttcatctatttt
tgtttggatgtatgcctattaaacttcatcaggaattgtttctggtcttt
gggacagcataaactgcttacaatggttgatactgactgccaacttagca
agatgtacaatcacctaggaggcaagcctctgggcatggctgtgagggag
tttttaggttgggttaattggggtggaaagccccatcctaaacgtaagca
gcactattttatggactggagtctaaccctacatcaaaaggagaaagtaa
gctgagtgtcaccctctttctctctgtctctgtctgtctctgtctgtctc
tgcctgtctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_83866756_83867568
seq2: B6Ng01-175E06.g_63_875 (reverse)

seq1  AGACAGACAGACAGAGACAGACAGAGACAGACAGAGACAGAGAGAAAGAG  50
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGGCAGAGACAGACAGAGACAGACAGAGACAGAGAGAAAGAG  50

seq1  GCTGACACTCAGCTTACTTTCTCCTTTTGATGTAGGCTTAGACTCCAGTC  100
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTGACACTCAGCTTACTTTCTCCTTTTGATGTAGGGTTAGACTCCAGTC  100

seq1  CATAAAATAGTGCTGCCTACGTTTAGGATGGGGCTTTCCACCCCAATTAA  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATAAAATAGTGCTGCTTACGTTTAGGATGGGGCTTTCCACCCCAATTAA  150

seq1  CCCAACCTAAAAACTCCCTCACAGCCATGCCCAGAGGCTTGCCTCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTAAAAACTCCCTCACAGCCATGCCCAGAGGCTTGCCTCCTAGG  200

seq1  TGATTGTACATCTTGCTAAGTTGGCAGTCAGTATCAACCATTGTAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTACATCTTGCTAAGTTGGCAGTCAGTATCAACCATTGTAAGCAG  250

seq1  TTTATGCTGTCCCAAAGACCAGAAACAATTCCTGATGAAGTTTAATAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTGTCCCAAAGACCAGAAACAATTCCTGATGAAGTTTAATAGGC  300

seq1  ATACATCCAAACAAAAATAGATGAAAATGGAAAAAAGATTTTTATGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCAAACAAAAATAGATGAAAATGGAAAAAAGATTTTTATGAAGC  350

seq1  AAAACACAACCTCTTTGTTTGTTTGTTTGTTTGTTTGAGGCAGGGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAACCTCTTTGTTTGTTTGTTTGTTTGTTTGAGGCAGGGTCTAA  400

seq1  CTATGTAGCTCTGGCTGGCTTTGAACTCACCATGTAGAACAGGCTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGCTCTGGCTGGCTTTGAACTCACCATGTAGAACAGGCTGGCCT  450

seq1  TGAATTCACAGAGATCAGTCTGCCTCTGCCTCTCAAGTGCTGGGACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACAGAGATCAGTCTGCCTCTGCCTCTCAAGTGCTGGGACTAAA  500

seq1  GGTGTGCACCACTATACCTGGTCACAATTAACTTTTATACCCATGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACCACTATACCTGGTCACAATTAACTTTTATACCCATGATTTA  550

seq1  CTTTTAAATAACTTTTATTGACTAAAAGTTGGTAACTTAATATCAGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATAACTTTTATTGACTAAAAGTTGGTAACTTAATATCAGACTG  600

seq1  ATGTCTGATCCCTAAGTCATTATTATTATTGCCTTAAAAATACTTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGATCCCTAAGTCATTATTATTATTGCCTTAAAAATACTTCTTGT  650

seq1  TCCCCAAATTATGGATCTGGTAGTTCAATGGAACAGAATATTTAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATTATGGATCTGGTAGTTCAATGGAACAGAATATTTAAAGCTG  700

seq1  TAAATGTTCCAGAGAATTCTGATGCCAAAATTACCATAAAGCTCAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCCAGAGAATTCTGATGCCAAAATTACCATAAAGCTCAGAGAA  750

seq1  ATGAAAGATCTGGCTCTTTGCTCAGAGTTGAATGCTGTGTACAAAATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGATCTGGCTCTTTGCTCAGAGTTGAATGCTGTGTACAAAATATC  800

seq1  TTAGGAAGAATTC  813
      |||||||||||||
seq2  TTAGGAAGAATTC  813


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