BAC Information

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BAC

Clone NameB6Ng01-176F07
Chromosome12 (Build37)12 (Build37)
Map Location 88,854,809 - 88,855,21488,709,109 - 88,710,105
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEsrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883
Downstream geneEG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F07.bB6Ng01-176F07.g
ACCGA003891GA003892
length468999
definitionB6Ng01-176F07.b B6Ng01-176F07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,854,809 - 88,855,214)(88,709,109 - 88,710,105)
sequence
aggatctcttatctctctggctcagccatgctaactccagtcggatttat
ttataattaaatcttcattattaaatctaaacacaacagagctgtcttca
gaggtcccagaagagggtgtcagatctctttacggatggttgtgagcctc
catatgatttctgggatttgaacttaggaccctcaaagagcattcagtgt
tcttctatccagcccctctctctctttcaatccttcagcctaggttttgg
tctatgtgcttctaaattcccacattccttattttaactttgtcctcagt
agcctgttttgtctctcattaccataaaaaaacagtaggcagtaagaagt
gtttgtttgtttgtttgtttgtttgtttgttttggtgtggtgattgaatt
atgcttggagcaaggtgtggtactattgggaggtgtggccttgttggatt
acagttgcttcactgtgg
gaattcagtctccacagatcaccataaacacagtggagatatccagaagg
gagaatgaacagatttcacacttattctgcaccatataagctatgacacc
atggacctttacacacactgctggtgattattaactttcttatcagtgaa
gtaatgttactgttgtcagcttcattaagttcttgtagtgtaacctaggt
aagtgaaaaatgttgcagggcagtggtagtgcatacctctgatactagta
ctagggaagaagagatgaatctctgagtttgatgccagcctgatcctcag
agtgagttcctgagcagccaggactacacagaaaaatactgtctcaaaaa
aaaaaaaaaaagttaaatgctttgctctgttagtgttttaatatttggag
cacatagttgtgagcctccatgtagatgctgggaacaaaactgatgtccc
ctggaaggacagtgctttctcagccactgagccatctctctagcttcaaa
tgctttgctctttctaggccttcaaccttgatttcagctttccttgtgga
atatttttatagagtttttgtcacagttgtatctgctctgttttagagac
agagtcttactatgtagcacagattggcctcaaagtcaaagcaatcctcc
tgcctcaaaatttaactccatgtgccccaatttctactggggggtgggag
ggactgtgtgacaatgacaacatttatatgagcacggtctatttgcagaa
tcaaagattccctgacaattaccttttgttcttctcttctgttgcatggt
ggcactttttcaatttctccatgcctccagaaatctcgagatatccaaag
agggtgagtacgccatagcccacatatgtgagcacagcaaccagcatggg
ttgttttcttcaaaagcttcattaaacgggcttttgtacaggtctccatt
ttctgttacatgatgaatctaagagagcaattaaaattgtttaattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88854809_88855214
seq2: B6Ng01-176F07.b_209_515

seq1  TGGGATTTGAACTCAGGACTGTCCAAGGGCATTCAGTGCTAACAATCACT  50
      ||||||||||||| |||||  || ||| |||||||||| |          
seq2  TGGGATTTGAACTTAGGACCCTCAAAGAGCATTCAGTGTT----------  40

seq1  GGGCCAACTCTCCAGCATCATCCCCTTTCTGTCAACCCTACATCCCAGGT  100
          |  || ||||||  |   | || ||| |||| ||| || || ||||
seq2  ----CTTCTATCCAGC--CCCTCTCTCTCTTTCAATCCTTCAGCCTAGGT  84

seq1  TTTGGTCTATGTGTTTCTGATTTCCCACATTCATTATTTAAAATTTGTCC  150
      ||||||||||||| |||| | ||||||||||| |||||| || |||||||
seq2  TTTGGTCTATGTGCTTCTAAATTCCCACATTCCTTATTTTAACTTTGTCC  134

seq1  TCAGTAGCCTGTTTTGTCTCTCATTACCAGAGAAAACCAGTAGGCAGTAA  200
      ||||||||||||||||||||||||||||| | |||| |||||||||||||
seq2  TCAGTAGCCTGTTTTGTCTCTCATTACCATAAAAAAACAGTAGGCAGTAA  184

seq1  GAAGTGTCCAGGCTGGCCTTGAACTCAGATATCCACCTGCCTCTTCCTCC  250
      |||||||                                           
seq2  GAAGTGT-------------------------------------------  191

seq1  CAAGTGCTGGGATTAAAGGCGTGGGCTACCACGCCCAGTTAAGAAGTGTC  300
                  ||                       |||      ||| 
seq2  ------------TT-----------------------GTT------TGTT  200

seq1  CTTTTGTTTCTTTGCTTG-TTTGGTGTGGTGATTGAATTATGCTTGGATC  349
        ||||||| |||| ||| ||||||||||||||||||||||||||||| |
seq2  TGTTTGTTTGTTTGTTTGTTTTGGTGTGGTGATTGAATTATGCTTGGAGC  250

seq1  AGGGTGTGGTACTATTGGGAGGTGTGGCCTTGTTGGATTAGAGTTTCATC  399
      | |||||||||||||||||||||||||||||||||||||| |||| | ||
seq2  AAGGTGTGGTACTATTGGGAGGTGTGGCCTTGTTGGATTACAGTTGCTTC  300

seq1  ACTGTGG  406
      |||||||
seq2  ACTGTGG  307

seq1: chr12_88709109_88710105
seq2: B6Ng01-176F07.g_64_1062

seq1  GAATTCAGTCTCCACAGATCACCATAAACACAGTGGAGATATCCAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCCACAGATCACCATAAACACAGTGGAGATATCCAGAAGG  50

seq1  GAGAATGAACAGATTTCACACTTATTCTGCACCATATAAGCTATGACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAACAGATTTCACACTTATTCTGCACCATATAAGCTATGACACC  100

seq1  ATGGACCTTTACACACACTGCTGGTGATTATTAACTTTCTTATCAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTTTACACACACTGCTGGTGATTATTAACTTTCTTATCAGTGAA  150

seq1  GTAATGTTACTGTTGTCAGCTTCATTAAGTTCTTGTAGTGTAACCTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTACTGTTGTCAGCTTCATTAAGTTCTTGTAGTGTAACCTAGGT  200

seq1  AAGTGAAAAATGTTGCAGGGCAGTGGTAGTGCATACCTCTGATACTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAAATGTTGCAGGGCAGTGGTAGTGCATACCTCTGATACTAGTA  250

seq1  CTAGGGAAGAAGAGATGAATCTCTGAGTTTGATGCCAGCCTGATCCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAGAAGAGATGAATCTCTGAGTTTGATGCCAGCCTGATCCTCAG  300

seq1  AGTGAGTTCCTGAGCAGCCAGGACTACACAGAAAAATACTGTCTCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCTGAGCAGCCAGGACTACACAGAAAAATACTGTCTCAAAAA  350

seq1  AAAAAAAAAAAGTTAAATGCTTTGCTCTGTTAGTGTTTTAATATTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGTTAAATGCTTTGCTCTGTTAGTGTTTTAATATTTGGAG  400

seq1  CACATAGTTGTGAGCCTCCATGTAGATGCTGGGAACAAAACTGATGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTTGTGAGCCTCCATGTAGATGCTGGGAACAAAACTGATGTCCC  450

seq1  CTGGAAGGACAGTGCTTTCTCAGCCACTGAGCCATCTCTCTAGCTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGACAGTGCTTTCTCAGCCACTGAGCCATCTCTCTAGCTTCAAA  500

seq1  TGCTTTGCTCTTTCTAGGCCTTCAACCTTGATTTCAGCTTTCCTTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTCTTTCTAGGCCTTCAACCTTGATTTCAGCTTTCCTTGTGGA  550

seq1  ATATTTTTATAGAGTTTTTGTCACAGTTGTATCTGCTCTGTTTTAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATAGAGTTTTTGTCACAGTTGTATCTGCTCTGTTTTAGAGAC  600

seq1  AGAGTCTTACTATGTAGCACAGATTGGCCTCAAAGTCAAAGCAATCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTACTATGTAGCACAGATTGGCCTCAAAGTCAAAGCAATCCTCC  650

seq1  TGCCTCAAAATTTAACTCCATGTGCCCCAATTTCTACTGGGGGGTGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAATTTAACTCCATGTGCCCCAATTTCTACTGGGGGGTGGGAG  700

seq1  GGACTGTGTGACAATGACAACATTTATATGAGCACGGTCTATTTGCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGTGACAATGACAACATTTATATGAGCACGGTCTATTTGCAGAA  750

seq1  TCAAAGATTCCCTGACAATTACCTTTTGTTCTTCTCTTTCTGTTGCATGG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAAAGATTCCCTGACAATTACCTTTTGTTCTTCTC-TTCTGTTGCATGG  799

seq1  TGGCAC-TTTTCAA-TTCTCCAATGCCTCAAGAAATCTCGAAGATATCCA  848
      |||||| ||||||| |||||| ||||||| |||||||||| |||||||||
seq2  TGGCACTTTTTCAATTTCTCC-ATGCCTCCAGAAATCTCG-AGATATCCA  847

seq1  AAGAGGGTGAGTACGCCATAGCCCACATATGTGAGCACAGCAACCAGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTGAGTACGCCATAGCCCACATATGTGAGCACAGCAACCAGCAT  897

seq1  GGGT--GTTTCTTCAAAAGCTTCATTAAACGGTCTTTTGTACAGTCCTCC  946
      ||||   ||||||||||||||||||||||||| |||||||||||  ||||
seq2  GGGTTGTTTTCTTCAAAAGCTTCATTAAACGGGCTTTTGTACAGGTCTCC  947

seq1  ATTTTCTGTTACATGATGAATCTAAGAGAGCAATTAAAATTGTTT-ATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTTCTGTTACATGATGAATCTAAGAGAGCAATTAAAATTGTTTAATTG  997

seq1  CA  997
      ||
seq2  CA  999