BAC Information

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BAC

Clone NameB6Ng01-176F16
Chromosome12 (Build37)
Map Location 27,791,993 - 27,932,192
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F16.bB6Ng01-176F16.g
ACCGA003909GA003910
length8731,106
definitionB6Ng01-176F16.b B6Ng01-176F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,931,324 - 27,932,192)(27,791,993 - 27,793,103)
sequence
gaattcattcaagtacatctcagttcactagattgtgtataaaaattaac
ttcatgcattttctttccttctgaggcaggaatttccacttgcaaactgg
acaagaacagtcaggaatcctacttttctgctcttctagaattccttaaa
tattcagggaagggctgaaaggatgaccccaaactaggagtgatggtcta
agtgcaatgaatgacagaggtagcagaagttgtccatgtggcattgtggg
cataaggaatatctgtacttgaatcaagccttggatgtaggcacctaaaa
gagccatagattcctagccacacacttgcctattagaaaagaaggagccc
ctcactgaagaggaatgggagggcagatggtgcaacaggataggaagaaa
gaagggaagaaggaaaaaaggatcgaggaaccagtatgagagtgaggtta
gctaggagactggaggagacaaagagataacacatgcctattgagattct
actatgtgtgtcaatcaaatgtgatcatctcagaaaaatacaaccagtga
tacatccaggtggggaattgattgcatggcattgaagtcgaagaaatttc
tacatggcacacattcctggaagaagtgctcattctgttgctctgggtag
aggatagtggttgcagcccaggtacatggcaaggccatgccctggtgatg
accaaagagtggccaatttagtaaacctttccagtgagcacaaggtggag
gaggctagatagtccaggtaagtatattcctcagggtctcagagcagcat
gatcctgagagatcataataccactgtcacctctaagtgaagcacctgtg
gaagatagtttcacaaatcgtga

gaattcatttctgtgggctgaactacagaggaagcaaaatcagaaagcac
cttagagagaaaggacgagtcagctggtgattcaattattgcattactta
taatggttggctttaactgtcacgttgacacaatctagaatcacctaggg
agtctagaaggattgtgtagatgaggttggcttactggcatgtctgcagg
ctattatgttgcttataaccattggggtgggaatatctgcccactgtggg
tgtcaccattccctggatagaggattctataccatgcagagaaggcaagc
taagcacaggaatgcatgcatccattcattgctctctacacttgactgtg
actcttactacctgtttcaaattcctgacacctaatgtaatcaaaaactg
taagatgaataaacttttttctacttctgttgtttctactgaagtatttt
tattatggcatgaggaaaggaaagaaaaggaaaggaaaggaaaggaaagg
aaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagg
aaaggaaaggaaaagaaggcattaaccaaggcttacactaccattttctt
agacttacttaatgtaaaaacacatgatatttgattatagatgacaatta
tgaagacacttcttgttagacattacactaaatatatcggacattatttt
cccagcaatgctgtgcagaaggagatggctttactctccattcacagatg
acgataaataaagataagttctttgccaacattatagttagtgagtggca
ggaccagtgagaattctcattggctggtcccaggagtcgagttattcaag
tatgtgttataatgtccacagggaatctgggaccaagcagcagtgtacca
actacctgttttttcttattttttttctccctgtttctaccatttctaca
agccttccttgaacagtattcattgcttaacagccatatttgaataaggt
ttggacccattatattgtgcaaacttaaagaacattttgtttatctctat
gccattgcacaaaatatggatgtttcctcaaaggaggtatcccttacatc
tagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27931324_27932192
seq2: B6Ng01-176F16.b_45_917 (reverse)

seq1  TCACGA-TTGTG-AACTATCTTCCACAGGTGCTTCACTTAGAGGTGACAG  48
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TCACGATTTGTGAAACTATCTTCCACAGGTGCTTCACTTAGAGGTGACAG  50

seq1  TGGTATTATGATCTCTCAGGATCCTGCTGCTCTGAGACCCTGAGG-ATAT  97
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TGGTATTATGATCTCTCAGGATCATGCTGCTCTGAGACCCTGAGGAATAT  100

seq1  ACTTACCTGG-CTATCTAGCCTCCTCCACCTTGTGCTCACTGGAAAGGTT  146
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTGGACTATCTAGCCTCCTCCACCTTGTGCTCACTGGAAAGGTT  150

seq1  TACTAAATTGGCCACTCTTTGGTCATCACCAGGGCATGGCCTTGCCATGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATTGGCCACTCTTTGGTCATCACCAGGGCATGGCCTTGCCATGT  200

seq1  ACCTGGGCTGCAACCACTATCCTCTACCCAGAGCAACAGAATGAGCACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCTGCAACCACTATCCTCTACCCAGAGCAACAGAATGAGCACTT  250

seq1  CTTCCAGGAATGTGTGCCATGTAGAAATTTCTTCGACTTCAATGCCATGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAATGTGTGCCATGTAGAAATTTCTTCGACTTCAATGCCATGC  300

seq1  AATCAATTCCCCACCTGGATGTATCACTGGTTGTATTTTTCTGAGATGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTCCCCACCTGGATGTATCACTGGTTGTATTTTTCTGAGATGAT  350

seq1  CACATTTGATTGACACACATAGTAGAATCTCAATAGGCATGTGTTATCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGATTGACACACATAGTAGAATCTCAATAGGCATGTGTTATCTC  400

seq1  TTTGTCTCCTCCAGTCTCCTAGCTAACCTCACTCTCATACTGGTTCCTCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCTCCAGTCTCCTAGCTAACCTCACTCTCATACTGGTTCCTCG  450

seq1  ATCCTTTTTTCCTTCTTCCCTTCTTTCTTCCTATCCTGTTGCACCATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTTCCTTCTTCCCTTCTTTCTTCCTATCCTGTTGCACCATCTG  500

seq1  CCCTCCCATTCCTCTTCAGTGAGGGGCTCCTTCTTTTCTAATAGGCAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCATTCCTCTTCAGTGAGGGGCTCCTTCTTTTCTAATAGGCAAGT  550

seq1  GTGTGGCTAGGAATCTATGGCTCTTTTAGGTGCCTACATCCAAGGCTTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTAGGAATCTATGGCTCTTTTAGGTGCCTACATCCAAGGCTTGA  600

seq1  TTCAAGTACAGATATTCCTTATGCCCACAATGCCACATGGACAACTTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTACAGATATTCCTTATGCCCACAATGCCACATGGACAACTTCTG  650

seq1  CTACCTCTGTCATTCATTGCACTTAGACCATCACTCCTAGTTTGGGGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGTCATTCATTGCACTTAGACCATCACTCCTAGTTTGGGGTCA  700

seq1  TCCTTTCAGCCCTTCCCTGAATATTTAAGGAATTCTAGAAGAGCAGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAGCCCTTCCCTGAATATTTAAGGAATTCTAGAAGAGCAGAAAA  750

seq1  GTAGGATTCCTGACTGTTCTTGTCCAGTTTGCAAGTGGAAATTCCTGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTCCTGACTGTTCTTGTCCAGTTTGCAAGTGGAAATTCCTGCCT  800

seq1  CAGAAGGAAAGAAAATGCATGAAGTTAATTTTTATACACAATCTAGTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAAGAAAATGCATGAAGTTAATTTTTATACACAATCTAGTGAA  850

seq1  CTGAGATGTACTTGAATGAATTC  869
      |||||||||||||||||||||||
seq2  CTGAGATGTACTTGAATGAATTC  873


seq1: chr12_27791993_27793103
seq2: B6Ng01-176F16.g_67_1172

seq1  GAATTCATTTCTGTGGGCTGAACTACAGAGGAAGCAAAATCAGAAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGTGGGCTGAACTACAGAGGAAGCAAAATCAGAAAGCAC  50

seq1  CTTAGAGAGAAAGGACGAGTCAGCTGGTGATTCAATTATTGCATTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAGAAAGGACGAGTCAGCTGGTGATTCAATTATTGCATTACTTA  100

seq1  TAATGGTTGGCTTTAACTGTCACGTTGACACAATCTAGAATCACCTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTGGCTTTAACTGTCACGTTGACACAATCTAGAATCACCTAGGG  150

seq1  AGTCTAGAAGGATTGTGTAGATGAGGTTGGCTTACTGGCATGTCTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAGGATTGTGTAGATGAGGTTGGCTTACTGGCATGTCTGCAGG  200

seq1  CTATTATGTTGCTTATAACCATTGGGGTGGGAATATCTGCCCACTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTTGCTTATAACCATTGGGGTGGGAATATCTGCCCACTGTGGG  250

seq1  TGTCACCATTCCCTGGATAGAGGATTCTATACCATGCAGAGAAGGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATTCCCTGGATAGAGGATTCTATACCATGCAGAGAAGGCAAGC  300

seq1  TAAGCACAGGAATGCATGCATCCATTCATTGCTCTCTACACTTGACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAGGAATGCATGCATCCATTCATTGCTCTCTACACTTGACTGTG  350

seq1  ACTCTTACTACCTGTTTCAAATTCCTGACACCTAATGTAATCAAAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACTACCTGTTTCAAATTCCTGACACCTAATGTAATCAAAAACTG  400

seq1  TAAGATGAATAAACTTTTTTCTACTTCTGTTGTTTCTACTGAAGTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAATAAACTTTTTTCTACTTCTGTTGTTTCTACTGAAGTATTTT  450

seq1  TATTATGGCATGAGGAAAGGAAAGAAAAGGAAAGGAAAGGAAAGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGCATGAGGAAAGGAAAGAAAAGGAAAGGAAAGGAAAGGAAAGG  500

seq1  AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG  550

seq1  AAAGGAAAGGAAAAGAAGGCATTAACCAAGGCTTACACTACCATTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGAAAAGAAGGCATTAACCAAGGCTTACACTACCATTTTCTT  600

seq1  AGACTTACTTAATGTAAAAACACATGATATTTGATTATAGATGACAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTTAATGTAAAAACACATGATATTTGATTATAGATGACAATTA  650

seq1  TGAAGACACTTCTTGTTAGACATTACACTAAATATATCGGACATTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTTCTTGTTAGACATTACACTAAATATATCGGACATTATTTT  700

seq1  CCCAGCAATGCTGTGCAGAAGGAGATGGCTTTACTCTCCATTCACAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAATGCTGTGCAGAAGGAGATGGCTTTACTCTCCATTCACAGATG  750

seq1  ACGATAAATAAAGATAAGTTCTTTGCCAACATTATAGTTAGTGAGTGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAAATAAAGATAAGTTCTTTGCCAACATTATAGTTAGTGAGTGGCA  800

seq1  GGACCAGTGAGAATTCTCATTGGCTGGTCCCAGGAGTCGAGTTATTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGTGAGAATTCTCATTGGCTGGTCCCAGGAGTCGAGTTATTCAAG  850

seq1  TATGTGTTATAATGTCCACAGGGAATCTGGGACCAAGCAGCAGTGTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTATAATGTCCACAGGGAATCTGGGACCAAGCAGCAGTGTACCA  900

seq1  ACTACCTGTTTTTTTCTTATTTTTTTTCTCCCTGTTTCTACCATTTCTAC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTG-TTTTTTCTTATTTTTTTTCTCCCTGTTTCTACCATTTCTAC  949

seq1  AAGCCTTCCTTGACAAGTATTCATTGCTTAACAGCCATATTTGAATAAGG  1000
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCCTTGAACAGTATTCATTGCTTAACAGCCATATTTGAATAAGG  999

seq1  TTTGGACCTATTATAATTGTTGCAAACTTAAAAGACATTTTGTTTTAATC  1050
      |||||||| ||||| |||| ||||||||||||  |||||||||||  |||
seq2  TTTGGACCCATTAT-ATTG-TGCAAACTTAAAGAACATTTTGTTT--ATC  1045

seq1  TCTATG-CATTGCACAAAATAT-GATGTTTTCCTCAATAGGAGGTAT-CC  1097
      |||||| ||||||||||||||| |||| ||||||||| ||||||||| ||
seq2  TCTATGCCATTGCACAAAATATGGATG-TTTCCTCAA-AGGAGGTATCCC  1093

seq1  ATACATTCTAGAAA  1111
       |||| ||||||||
seq2  TTACA-TCTAGAAA  1106


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