BAC Information

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BAC

Clone NameB6Ng01-176J22
Chromosome12 (Build37)
Map Location 119,988,958 - 120,138,874
singlet/doubletdoublet
Overlap geneEG668615, LOC620665, Sp8, Abcb5
Upstream geneRapgef5, Cdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J22.bB6Ng01-176J22.g
ACCGA004111GA004112
length1,075986
definitionB6Ng01-176J22.b B6Ng01-176J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,137,792 - 120,138,874)(119,988,958 - 119,989,940)
sequence
gaattcaaggccagcctgggctatatggtgaggatagattgatgatgatg
atgatgacgaagatagattgattgatagataatagatagaaagatagata
gaatagataatagatacatgatagattgatgacagatggatgataggaca
aatatcaattttcttcaaattattttattaaaattaacttttagggctgg
agagatggctcagaggctaagatagttcactgactattcttccagagggc
ctgagttcagttcccagcaaccacatggtggctcccaaccatctgtaatg
ggattcgatgccctcttctggtatgtctgaggacagctacagtatacgca
cataaatttttttaattaacttctataaaacaattaagattttaatctaa
ttgagagaatgagtataatgcaaattgtcttattcttactttaagtgagt
ttttttttttaatgtcgatgtgagggcctatacatatttggccagaggcc
agaggaggacatcagacatctgtgtcacttgcttccttatttctttgaga
caaggatgaacctggagctaggctggtaccagaacaccccatcaatctgt
ctccggctcctgcagtggtgtggttacaggtgcatatgctaaggaccaga
acttaggccttcatgctctcaaagcaagtgcttttatccactgaggcacc
tttcaactacaagataaaaatttaaagttctgttagaatatgaactctct
agaagagttaaggaagctctctaaggttttattagattggatttcaattc
taaaagagggccaaagacctcaatcttactagcttacatgggcaaaaaaa
tctgtaaaacatatttagcacagtacttgtctaataggcaataggttggg
tgtgaacagccagtacatttgaaatgctagttacagccttaagcagaaaa
tgtcagtcctgataaatccatggaaaccccctgctccaaaaagtgtattt
tttctttattgtgcaatgtgctaaaaattttcatactgccctattttttc
acctgtctcgaaaaaagaagaagac
gaattctcaggtaccatcttcaattttatcttgcatgtcatactattctt
ggtcagtgtactttggagacttaaatcagaagaaaagaaataaatcaaaa
tgtatcctggtaggtttaaactgctagaagatgaattgtagttgtcacct
cacatacaggccatgttctctctctctctctctctctctctctctctctc
tctctctgtgtgtgtgtgtgtgtgggtgcaaccaaagaaacacacagaca
cattctcacatacacacacacacacactcacacaatctttaccaagacac
acacgagtatctcacgaacaagctcacagtgccaagcccactgtgggaag
attaaagatatttcttgatagtgagcagtcagttgtgttataaaagttca
ttgtttaaagcatgggggaaaattattccaactctgactcttatctgact
cccaggtagactccctcttcccaaatcaagaattccaagtttggtattct
tgagtctaacagactaagactccctcttgccaaacctgatagagcactgg
cttaagcttaagctgttctgcctgttacctgtgcttctggctcaaatcta
acaacttcttttaaaaaattcttcaagttagatggattcttacttaccat
acacaaagacctgggtacaactgcgaggaacacataaatcatatagtgtg
atagagatagaggatctaatgttcaggggcatcctcagctacataagaga
tataagaccacctagatcttatatctgcacgtcttcctcgtgtgagaata
aacatatgtatcaggtatgtgggatgccctggcaccaatttgctatagat
aaaagaaatactgcaggatagcccactgtttgtctccaggagcactcaga
taggatggcaggatgacgtatgagacacattatggtctgctccggggtta
tctaaagtcaaaagatgaaggaggccaagtttgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120137792_120138874
seq2: B6Ng01-176J22.b_47_1121 (reverse)

seq1  GTCTTTCCTTCTTTTTTTCTGAGACAGGGTGAAAAATA-GGCAGTATGAA  49
      |||||  ||||||||||   ||||||||   ||||||| ||||||||| |
seq2  GTCTT--CTTCTTTTTT--CGAGACAGGTGAAAAAATAGGGCAGTATG-A  45

seq1  AAATTTTTAGCACATTGGCACAATAAAGAAAAAAATACCACTTTTTGGGA  99
      |||||||||||||||| ||||||||||| |||||||| |||||||| |||
seq2  AAATTTTTAGCACATT-GCACAATAAAG-AAAAAATA-CACTTTTT-GGA  91

seq1  GCAGGGGGGTTTCCATGGATTTATCAGGACTGACATTTTCTGCTTAAGGC  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-GGGGGTTTCCATGGATTTATCAGGACTGACATTTTCTGCTTAAGGC  140

seq1  TGTAACTAGCATTTCAAATGTACTGGCTGTTCACA-CCAACCTATTGCCT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAACTAGCATTTCAAATGTACTGGCTGTTCACACCCAACCTATTGCCT  190

seq1  ATTAGACAAGTACTGTGCTAAATATGTTTTACAGATTTTTTTGCCCATGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAAGTACTGTGCTAAATATGTTTTACAGATTTTTTTGCCCATGT  240

seq1  AAGCTAGTAAGATTGAGGTCTTTGGCCCTCTTTTAGAATTGAAATCCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTAAGATTGAGGTCTTTGGCCCTCTTTTAGAATTGAAATCCAAT  290

seq1  CTAATAAAACCTTAGAGAGCTTCCTTAACTCTTCTAGAGAGTTCATATTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAACCTTAGAGAGCTTCCTTAACTCTTCTAGAGAGTTCATATTC  340

seq1  TAACAGAACTTTAAATTTTTATCTTGTAGTTGAAAGGTGCCTCAGTGGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAACTTTAAATTTTTATCTTGTAGTTGAAAGGTGCCTCAGTGGAT  390

seq1  AAAAGCACTTGCTTTGAGAGCATGAAGGCCTAAGTTCTGGTCCTTAGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTTGCTTTGAGAGCATGAAGGCCTAAGTTCTGGTCCTTAGCAT  440

seq1  ATGCACCTGTAACCACACCACTGCAGGAGCCGGAGACAGATTGATGGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTGTAACCACACCACTGCAGGAGCCGGAGACAGATTGATGGGGT  490

seq1  GTTCTGGTACCAGCCTAGCTCCAGGTTCATCCTTGTCTCAAAGAAATAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTACCAGCCTAGCTCCAGGTTCATCCTTGTCTCAAAGAAATAAG  540

seq1  GAAGCAAGTGACACAGATGTCTGATGTCCTCCTCTGGCCTCTGGCCAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTGACACAGATGTCTGATGTCCTCCTCTGGCCTCTGGCCAAAT  590

seq1  ATGTATAGGCCCTCACATCGACATTAAAAAAAAAAACTCACTTAAAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGGCCCTCACATCGACATTAAAAAAAAAAACTCACTTAAAGTAA  640

seq1  GAATAAGACAATTTGCATTATACTCATTCTCTCAATTAGATTAAAATCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGACAATTTGCATTATACTCATTCTCTCAATTAGATTAAAATCTT  690

seq1  AATTGTTTTATAGAAGTTAATTAAAAAAATTTATGTGCGTATACTGTAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTATAGAAGTTAATTAAAAAAATTTATGTGCGTATACTGTAGC  740

seq1  TGTCCTCAGACATACCAGAAGAGGGCATCGAATCCCATTACAGATGGTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGACATACCAGAAGAGGGCATCGAATCCCATTACAGATGGTTG  790

seq1  GGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGCCCTCTGGAAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGCCCTCTGGAAGAAT  840

seq1  AGTCAGTGAACTATCTTAGCCTCTGAGCCATCTCTCCAGCCCTAAAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGAACTATCTTAGCCTCTGAGCCATCTCTCCAGCCCTAAAAGTT  890

seq1  AATTTTAATAAAATAATTTGAAGAAAATTGATATTTGTCCTATCATCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATAAAATAATTTGAAGAAAATTGATATTTGTCCTATCATCCAT  940

seq1  CTGTCATCAATCTATCATGTATCTATTATCTATTCTATCTATCTTTCTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCAATCTATCATGTATCTATTATCTATTCTATCTATCTTTCTAT  990

seq1  CTATTATCTATCAATCAATCTATCTTCGTCATCATCATCATCATCAATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCTATCAATCAATCTATCTTCGTCATCATCATCATCATCAATCT  1040

seq1  ATCCTCACCATATAGCCCAGGCTGGCCTTGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  ATCCTCACCATATAGCCCAGGCTGGCCTTGAATTC  1075

seq1: chr12_119988958_119989940
seq2: B6Ng01-176J22.g_66_1051

seq1  GAATTCTCAGGTACCATCTTCAATTTTATCTTGCATGTCATACTATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTACCATCTTCAATTTTATCTTGCATGTCATACTATTCTT  50

seq1  GGTCAGTGTACTTTGGAGACTTAAATCAGAAGAAAAGAAATAAATCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGTACTTTGGAGACTTAAATCAGAAGAAAAGAAATAAATCAAAA  100

seq1  TGTATCCTGGTAGGTTTAAACTGCTAGAAGATGAATTGTAGTTGTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGGTAGGTTTAAACTGCTAGAAGATGAATTGTAGTTGTCACCT  150

seq1  CACATACAGGCCATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGGCCATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCCTAGGTGGTGCTACCCATGTACCTCTGTGAGC  250
      ||||||| | | | | |    |  ||||| ||| | | | | |   || |
seq2  TCTCTCTGTGTGTGTGTGTGTGTGGGTGCAACCAAAGAAACACACAGA-C  249

seq1  AC-TTCTCTGTCTGTTTCAGTGTGTCTATGTTAATATCTTTACCAAGACA  299
      || |||||         ||      |  |   |  |||||||||||||||
seq2  ACATTCTCACATACACACACACACACACTCACACAATCTTTACCAAGACA  299

seq1  CACACTAGTAACTCACGAACAAGCTCACAGTGCCAAGCCCACAGTGGGAA  349
      ||||| |||| ||||||||||||||||||||||||||||||| |||||||
seq2  CACACGAGTATCTCACGAACAAGCTCACAGTGCCAAGCCCACTGTGGGAA  349

seq1  GATTAAAGATATTTCTTGATAGTGAGCAGTCAGTTGTGTTATAAAAGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGATATTTCTTGATAGTGAGCAGTCAGTTGTGTTATAAAAGTTC  399

seq1  ATTGTTTCAAGCATGGGGGAAAATTATTCCAACACTGAGATCTTAAACTG  449
      ||||||| ||||||||||||||||||||||||| ||||  |||| | |||
seq2  ATTGTTTAAAGCATGGGGGAAAATTATTCCAACTCTGA-CTCTT-ATCTG  447

seq1  ACTCCCAAGGTTGTCTCCCTCTTCCCAAATCAAGCATTCCAAGTTTGGTA  499
      |||||| |||| | |||||||||||||||||||| |||||||||||||||
seq2  ACTCCC-AGGTAGACTCCCTCTTCCCAAATCAAGAATTCCAAGTTTGGTA  496

seq1  TTCTTGAGTCTAACAGACTAAGACTCCCTCTTGCCTAACCTGATAGAGCA  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTGAGTCTAACAGACTAAGACTCCCTCTTGCCAAACCTGATAGAGCA  546

seq1  CTGGCTTAAGCTTAAGCTGTTCTGCCTGTTACCTCTGCTTCTGGCTCAAA  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGCTTAAGCTTAAGCTGTTCTGCCTGTTACCTGTGCTTCTGGCTCAAA  596

seq1  TCTAACAACTTCTTTTAAAAAATTCTTCAA-TTAGTTGGATTCTTACTTA  648
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TCTAACAACTTCTTTTAAAAAATTCTTCAAGTTAGATGGATTCTTACTTA  646

seq1  CCATACACAAAGACCTGGGTCCAACTGCCAGGACCACATGAATCATA-AG  697
      |||||||||||||||||||| ||||||| |||| ||||| ||||||| ||
seq2  CCATACACAAAGACCTGGGTACAACTGCGAGGAACACATAAATCATATAG  696

seq1  TGTGGTAGAGATAGGAGGATCTAAAGTTCAGGGCCATCCTCAGCTACATA  747
      |||| |||||||| |||||||||| |||||||| ||||||||||||||||
seq2  TGTGATAGAGATA-GAGGATCTAATGTTCAGGGGCATCCTCAGCTACATA  745

seq1  GGGGATTTAAGACCAGCCTAGGTCTTAAATCAGTAAGACTCCATCTTGTG  797
       | ||| |||||||| ||||| ||||| ||| | | | || | || ||||
seq2  AGAGATATAAGACCA-CCTAGATCTTATATCTGCACGTCTTCCTCGTGTG  794

seq1  AGATCAACCATATGAAACAGGCATGTGGGATG-CCTGGCACCAAATAGCT  846
      |||  || |||||| | |||| |||||||||| ||||||||||| | |||
seq2  AGAATAAACATATGTATCAGGTATGTGGGATGCCCTGGCACCAATTTGCT  844

seq1  ATTCAATAAAAGAATAACTGCAGTATAG-CCACTG-TTGTCACCAGTAGC  894
      | |  |||||||||  ||||||| |||| |||||| ||||| |||| |||
seq2  A-TAGATAAAAGAAATACTGCAGGATAGCCCACTGTTTGTCTCCAGGAGC  893

seq1  ACTCAAATCAGATCACA-GATGTC-TATCAGACACATTTAGGTCT-CTCA  941
      ||||| ||  |||  || |||| | ||| |||||||||  ||||| ||| 
seq2  ACTCAGATAGGATGGCAGGATGACGTATGAGACACATTATGGTCTGCTCC  943

seq1  GGGTTTATCTAGAGTTAAAAATGGAAGGAGG-CAAGTTTGAAC  983
      ||| ||||||| ||| ||||   |||||||| |||||||||||
seq2  GGGGTTATCTAAAGTCAAAAGATGAAGGAGGCCAAGTTTGAAC  986