BAC Information

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BAC

Clone NameB6Ng01-177H17
Chromosome12 (Build37)
Map Location 61,036,876 - 61,104,155
singlet/doubletdoublet
Overlap geneEG622488
Upstream geneSec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneLOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177H17.bB6Ng01-177H17.g
ACCGA004740GA004741
length1,1611,136
definitionB6Ng01-177H17.b B6Ng01-177H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,102,990 - 61,104,155)(61,036,876 - 61,037,984)
sequence
gaattctatagcaccacatacacttacatcagtgtaataaatttatacag
atggctacaaacctttatatttagctactctaatttttcatatacatttc
tattaggagatggtagcttttcataggaacactgaaaaatgtaggtttat
ttctttctagctccaggggaatcaaatatctctggtctctctaggcacct
tcactaattacaaataccctcacttaaaaacatgtacatatacaagcaat
ttaaagcaaaaataatcttgaaaaatgaaagtaaagaaatataaggtaat
atataagaaaacctatatggtttcttttgtattccaccatatgttttaac
ttttatcggttcagaggtaaaaggaagctacatgtttctgtacctcataa
gttcaagtacaccatactgcactgtctgcataaggagacagaccagtgga
gcatctaaactgctaatcagtggcaaaccgtccttgttctaacaacactt
cgttacccatttaagataaccatgataaaagaggagcaaaccacctctgt
tgagtgctaagattgtcataatgtttgttcttgttttaaaaatgtcttaa
ttattgttatattccctttagaaagacagagtcatgataatttcctatct
acagactttaaattatttgacactgaccattaaatggaaatgaaaagatt
catttcaagttacaagcttcctggctcttttgttctgccaaataagaaca
gacaatgcaacatagcccttcatttttttctggaaggacaaggcacagat
ataccagataactcagatcgcttcaatacatgcataataccattctaacc
tttgggaatcatagatcttaacattgactcaacaaatttgtatgatagtt
ttgggtacaaataaaactatcatttaataaaaattcaactacataaaaaa
tgttactaggaaacttaagacaattgcccttaagcaaggtgatgatttaa
tgcctttttacttcttataacatcaatactgagccttcctcatcacagag
aagattttaaaataaacttaaactagacctgtactcacatagttacagaa
aaatcacctagtatacttggatttctatcattcaaagctatatttatgac
ggatctatttt

gaattctatgggagactgttttccaggagggttgtcttctagatggactc
tgcaggtagcatgcaatgctctgtgtctgtgtttggaaatgagtgagaca
ttttcattcatctctttaagaaaaattctgaatctatttgtggtgtattt
tttctggacagaaaggacatttgaaattaaaacaaaattttatttttcaa
ctgacaccacccacccccatgtcagaaatggtctctaccattacaggacg
agatattccagagttcattgcaatgaggaaacagtatctcttcggaatat
atagcactgaatgccttgcatgttatttgttcttttgagtagacattgta
ttctcacatggttagaggtgaggatgtcagagacacgaaggaatgagtgt
atgtgtctccaggcaggaacagatttcttatgctgtttctttcaaataaa
aatatgatgtcatgcctgatatggttacattcagtgcgggttggatggtt
ttctttttcttttcaaagtacttgtaaaagatttcacatcagagcatctt
gccagccggagagattaagtggacactgacacagacttgatggaatggcg
cagaatgatacgttgtgaaggagaaagcacaggaagtgaagaacccaagt
gcttctgaagagcataagttgattctagacaagaggttgaaagcctattg
aactcgcctatgtcagggtcaagaatccatatttctagccctgagttcta
tgacacatgtccctattcttgtattgatgtttttgccatatattttattg
attacttattattgatttattgtgtacctctaagggtgatgggtcccctt
tgtcactcttttacatttgttcaaagggtgtgtgacagatgctagatggt
ggaaaggaagagctgacagtcctttccttccttgagagtcattcctaagg
ggggagttttattttatttatttttcagaccggcttactggccggggtat
caaggttaattgacttttaaatgcccaataaatagaaaaggagtaagata
ttatgttttccttattccaaccactgaatgggagtataatccagtcctag
aacattttaccaaaaataccttccgaaccggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61102990_61104155
seq2: B6Ng01-177H17.b_47_1207 (reverse)

seq1  AAAATAGATACCCTGTCATAAATATAGCTTTG-ATGATAGAAATCC-AGT  48
      |||||||||   | |||||||||||||||||| ||||||||||||| |||
seq2  AAAATAGAT---CCGTCATAAATATAGCTTTGAATGATAGAAATCCAAGT  47

seq1  ATACTAGGTGATTTTCTGGTAACTTAATGGTTGAGTACAGGTTCTAGTTT  98
      |||||||||||||||   ||||||  |||  |||||||||| ||||||||
seq2  ATACTAGGTGATTTTTCTGTAACT--ATG--TGAGTACAGG-TCTAGTTT  92

seq1  AAGTTTTATTTTTAAAATC-TCTCTGTGATGAGGAAGGCTCAGTATTGAT  147
      ||||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTTT--ATTTTAAAATCTTCTCTGTGATGAGGAAGGCTCAGTATTGAT  140

seq1  G-TATAAGAAGT-AAAAGGCATTAAATCATCACCTTGCTTAA-GGCAATT  194
      | |||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GTTATAAGAAGTAAAAAGGCATTAAATCATCACCTTGCTTAAGGGCAATT  190

seq1  GTCTTAAAGTTTCCTAGTAACATTTTTTATGTAGTTGAATTTTTATTAAA  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTT-AAGTTTCCTAGTAACATTTTTTATGTAGTTGAATTTTTATTAAA  239

seq1  TGATAGTTTTATTTGTACCCAAAACTATCATACAAATTTGTTGAGTCAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTTTATTTGTACCCAAAACTATCATACAAATTTGTTGAGTCAAT  289

seq1  GTTAAGATCTATGATTCCCAAAGGTTAGAATGGTATTATGCATGTATTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATCTATGATTCCCAAAGGTTAGAATGGTATTATGCATGTATTGA  339

seq1  AGCGATCTGAGTTATCTGGTATATCTGTGCCTTGTCCTTCCAGAAAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATCTGAGTTATCTGGTATATCTGTGCCTTGTCCTTCCAGAAAAAAA  389

seq1  TGAAGGGCTATGTTGCATTGTCTGTTCTTATTTGGCAGAACAAAAGAGCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGCTATGTTGCATTGTCTGTTCTTATTTGGCAGAACAAAAGAGCC  439

seq1  AGGAAGCTTGTAACTTGAAATGAATCTTTTCATTTCCATTTAATGGTCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTTGTAACTTGAAATGAATCTTTTCATTTCCATTTAATGGTCAG  489

seq1  TGTCAAATAATTTAAAGTCTGTAGATAGGAAATTATCATGACTCTGTCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATAATTTAAAGTCTGTAGATAGGAAATTATCATGACTCTGTCTT  539

seq1  TCTAAAGGGAATATAACAATAATTAAGACATTTTTAAAACAAGAACAAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGGAATATAACAATAATTAAGACATTTTTAAAACAAGAACAAAC  589

seq1  ATTATGACAATCTTAGCACTCAACAGAGGTGGTTTGCTCCTCTTTTATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACAATCTTAGCACTCAACAGAGGTGGTTTGCTCCTCTTTTATCA  639

seq1  TGGTTATCTTAAATGGGTAACGAAGTGTTGTTAGAACAAGGACGGTTTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCTTAAATGGGTAACGAAGTGTTGTTAGAACAAGGACGGTTTGC  689

seq1  CACTGATTAGCAGTTTAGATGCTCCACTGGTCTGTCTCCTTATGCAGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTAGCAGTTTAGATGCTCCACTGGTCTGTCTCCTTATGCAGACA  739

seq1  GTGCAGTATGGTGTACTTGAACTTATGAGGTACAGAAACATGTAGCTTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTATGGTGTACTTGAACTTATGAGGTACAGAAACATGTAGCTTCC  789

seq1  TTTTACCTCTGAACCGATAAAAGTTAAAACATATGGTGGAATACAAAAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTCTGAACCGATAAAAGTTAAAACATATGGTGGAATACAAAAGA  839

seq1  AACCATATAGGTTTTCTTATATATTACCTTATATTTCTTTACTTTCATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATAGGTTTTCTTATATATTACCTTATATTTCTTTACTTTCATTT  889

seq1  TTCAAGATTATTTTTGCTTTAAATTGCTTGTATATGTACATGTTTTTAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATTATTTTTGCTTTAAATTGCTTGTATATGTACATGTTTTTAAG  939

seq1  TGAGGGTATTTGTAATTAGTGAAGGTGCCTAGAGAGACCAGAGATATTTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTATTTGTAATTAGTGAAGGTGCCTAGAGAGACCAGAGATATTTG  989

seq1  ATTCCCCTGGAGCTAGAAAGAAATAAACCTACATTTTTCAGTGTTCCTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGGAGCTAGAAAGAAATAAACCTACATTTTTCAGTGTTCCTAT  1039

seq1  GAAAAGCTACCATCTCCTAATAGAAATGTATATGAAAAATTAGAGTAGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTACCATCTCCTAATAGAAATGTATATGAAAAATTAGAGTAGCT  1089

seq1  AAATATAAAGGTTTGTAGCCATCTGTATAAATTTATTACACTGATGTAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGGTTTGTAGCCATCTGTATAAATTTATTACACTGATGTAAG  1139

seq1  TGTATGTGGTGCTATAGAATTC  1166
      ||||||||||||||||||||||
seq2  TGTATGTGGTGCTATAGAATTC  1161


seq1: chr12_61036876_61037984
seq2: B6Ng01-177H17.g_69_1204

seq1  GAATTCTATGGGAGACTGTTTTCCAGGAGGGTTGTCTTCTAGATGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGAGACTGTTTTCCAGGAGGGTTGTCTTCTAGATGGACTC  50

seq1  TGCAGGTAGCATGCAATGCTCTGTGTCTGTGTTTGGAAATGAGTGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAGCATGCAATGCTCTGTGTCTGTGTTTGGAAATGAGTGAGACA  100

seq1  TTTTCATTCATCTCTTTAAGAAAAATTCTGAATCTATTTGTGGTGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCATCTCTTTAAGAAAAATTCTGAATCTATTTGTGGTGTATTT  150

seq1  TTTCTGGACAGAAAGGACATTTGAAATTAAAACAAAATTTTATTTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACAGAAAGGACATTTGAAATTAAAACAAAATTTTATTTTTCAA  200

seq1  CTGACACCACCCACCCCCATGTCAGAAATGGTCTCTACCATTACAGGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCACCCACCCCCATGTCAGAAATGGTCTCTACCATTACAGGACG  250

seq1  AGATATTCCAGAGTTCATTGCAATGAGGAAACAGTATCTCTTCGGAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCCAGAGTTCATTGCAATGAGGAAACAGTATCTCTTCGGAATAT  300

seq1  ATAGCACTGAATGCCTTGCATGTTATTTGTTCTTTTGAGTAGACATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGAATGCCTTGCATGTTATTTGTTCTTTTGAGTAGACATTGTA  350

seq1  TTCTCACATGGTTAGAGGTGAGGATGTCAGAGACACGAAGGAATGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACATGGTTAGAGGTGAGGATGTCAGAGACACGAAGGAATGAGTGT  400

seq1  ATGTGTCTCCAGGCAGGAACAGATTTCTTATGCTGTTTCTTTCAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTCCAGGCAGGAACAGATTTCTTATGCTGTTTCTTTCAAATAAA  450

seq1  AATATGATGTCATGCCTGATATGGTTACATTCAGTGCGGGTTGGATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATGTCATGCCTGATATGGTTACATTCAGTGCGGGTTGGATGGTT  500

seq1  TTCTTTTTCTTTTCAAAGTACTTGTAAAAGATTTCACATCAGAGCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTTCAAAGTACTTGTAAAAGATTTCACATCAGAGCATCTT  550

seq1  GCCAGCCGGAGAGATTAAGTGGACACTGACACAGACTTGATGGAATGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCGGAGAGATTAAGTGGACACTGACACAGACTTGATGGAATGGCG  600

seq1  CAGAATGATACGTTGTGAAGGAGAAAGCACAGGAAGTGAAGAACCCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGATACGTTGTGAAGGAGAAAGCACAGGAAGTGAAGAACCCAAGT  650

seq1  GCTTCTGAAGAGCATAAGTTGATTCTAGACAAGAGGTTGAAAGCCTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGAGCATAAGTTGATTCTAGACAAGAGGTTGAAAGCCTATTG  700

seq1  AACTCGCCTATGTCAGGGTCAAGAATCCATATTTCTAGCCCTGAGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGCCTATGTCAGGGTCAAGAATCCATATTTCTAGCCCTGAGTTCTA  750

seq1  TGACACATGT-CCTATTCTTGTATTGATGTTTTTGCCATATATTTTATTG  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGTCCCTATTCTTGTATTGATGTTTTTGCCATATATTTTATTG  800

seq1  ATTACTTATTATTGATTTATTGTGTACCTCTAA-GGTGAT-GGTCCCCTT  847
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATTACTTATTATTGATTTATTGTGTACCTCTAAGGGTGATGGGTCCCCTT  850

seq1  TGTCACTCTTTTACATTTGTTCAAAGGGTGTGTGACAGATGCTAGATGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTTTTACATTTGTTCAAAGGGTGTGTGACAGATGCTAGATGGT  900

seq1  GGAAA-GAAGAGCTGACAGTCCTTTCCTTCCTTGAGAGTCA-TCCTAA--  943
      ||||| ||||||||||||||||||||||||||||||||||| ||||||  
seq2  GGAAAGGAAGAGCTGACAGTCCTTTCCTTCCTTGAGAGTCATTCCTAAGG  950

seq1  GGGGAGTTTTA-TTTATTTA-TTTTCAGA-CGGC-TACTGGC--GGGTAT  987
      ||||||||||| |||||||| |||||||| |||| |||||||  ||||||
seq2  GGGGAGTTTTATTTTATTTATTTTTCAGACCGGCTTACTGGCCGGGGTAT  1000

seq1  C-AGGTTAA-TGAC-TTTAAATG-CCAAT-AATAGAAA--GAGT-AGATA  1029
      | ||||||| |||| |||||||| ||||| ||||||||  |||| |||||
seq2  CAAGGTTAATTGACTTTTAAATGCCCAATAAATAGAAAAGGAGTAAGATA  1050

seq1  -TATTGTTTCTGTAT--CAA-CACTGAAT-GGAGTATAAAATCCATTCCT  1074
       |||  ||||  |||  ||| |||||||| |||||||  |||||| ||||
seq2  TTATGTTTTCCTTATTCCAACCACTGAATGGGAGTAT--AATCCAGTCCT  1098

seq1  AG-ACATTT--ACAAAAATACCTTTCAGACAGGTGTGT  1109
      || ||||||   |||||||||||| |  || |||||||
seq2  AGAACATTTTACCAAAAATACCTTCCGAACCGGTGTGT  1136


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