BAC Information

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BAC

Clone NameB6Ng01-177O03
Chromosome12 (Build37)
Map Location 63,607,993 - 63,691,484
singlet/doubletdoublet
Overlap geneLOC100040438
Upstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
Downstream gene1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177O03.bB6Ng01-177O03.g
ACCGA005028GA005029
length951901
definitionB6Ng01-177O03.b B6Ng01-177O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,607,993 - 63,608,651)(63,690,791 - 63,691,484)
sequence
gaattcttttaaattgcacatttgtaaaaagtgtttgtttgaaacaatta
gtgcttagaaaatactgatggagacatttaaacagtaggaaattgtttat
tgattacctcccacttattgtgtgtgctgtctatgtagctagacttccta
tttttcctccaactttttattattttatttatttacattcttgtcattgt
cccctttcattttccctctcacagttcctcatcccattcctactacccct
tgcctcttccccttccaccaggactcccccttatcaagtcttttgaggat
tatgcacagcttctcccactaaggccagatcaggcagacctctgctatat
ttgtgccaggggccttggactggcccatgtacttgcctggttggtgtctc
agtctctgggagctcccagaggtttgtattaggtgagactgccggtattc
ttatgaggttgctcccctcagtttcctcaatcccttccctaattcaacca
tagaggttctctacttcagttcaattgttgggtataagtatctgcatctg
tctcagtcagctgttggtagggtctctcaagggacagccatgccacgctc
ctgtctgtaagcatatcatagcatcagtaatagtgtcaggtcttgatgcc
cacccatgggatggatcccaaattgttccagtcactggatcacctttctt
ttagtctcttctccatttttgttcctgaagttcttttaggcaggaacaat
tctgtgtaaaagattttgattgtttgttagtaactctgtacctttgctgg
aggccctctctgtctctttgagttccctctcaccaatgtgggacattttg
gcaaaggtcatcccttattcagtccttagagtctctcaccttccatgtct
ctggtactttctagagtgccatccacctgcctattcccacacacctgttg
a

gaattccattctcactgtagttaactgttgtaagttttgttttttatcac
tatgattctgtcaaatgcttgttctacctatgtcaatatgatcacttctt
tttaaagctcttcttcagtatgttctgggatagattgtacttactcattc
caaacatggaactgcttctgtttgacatttctattctctccagtgccaaa
acaatatatttgtttggtttttattttaaattttattaggaaaatgcaaa
tatgagcattaacataattaattattttattgtattttaataataacact
attattaagtattttatttattgacacaccaattgctgcccctattccca
gttcctctgcatagagtttttccccctattccctttctcctttacaacta
tgagggtgcccaccctgggtatcccccttccctggagcatcatgtctaca
ggattaggcacatcctttccactgaggccagacaagacactcttctgcta
catatgtgctagaggcttcagaccagtctttgtatgctctttgcttggta
gctcagtctcttaatgcttccagtttccagagtacttgatacgttgatcc
tcctataaggttggcttccattcatttccttcaatcctttccctaactgt
ttcataggcgtccaagaactcagtccaatgcttggccgtgagtgtttgca
tctgtctcagtcaacttgctggtgagccctctaagaggacacccatgcta
ggctactgtctgtaaggagtaatatcatcaattatagtgtcaaggatttg
catccatccatgggccagtcattagtcacccatttttgtctgtgctccac
ttgtgtttctgcatttcttttagactagagcaaatttgtgccaaaaaaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63607993_63608651
seq2: B6Ng01-177O03.b_43_701

seq1  GAATTCTTTTAAATTGCACATTTGTAAAAAGTGTTTGTTTGAAACAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATTGCACATTTGTAAAAAGTGTTTGTTTGAAACAATTA  50

seq1  GTGCTTAGAAAATACTGATGGAGACATTTAAACAGTAGGAAATTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGAAAATACTGATGGAGACATTTAAACAGTAGGAAATTGTTTAT  100

seq1  TGATTACCTCCCACTTATTGTGTGTGCTGTCTATGTAGCTAGACTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCTCCCACTTATTGTGTGTGCTGTCTATGTAGCTAGACTTCCTA  150

seq1  TTTTTCCTCCAACTTTTTATTATTTTATTTATTTACATTCTTGTCATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCAACTTTTTATTATTTTATTTATTTACATTCTTGTCATTGT  200

seq1  CCCCTTTCATTTTCCCTCTCACAGTTCCTCATCCCATTCCTACTACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCATTTTCCCTCTCACAGTTCCTCATCCCATTCCTACTACCCCT  250

seq1  TGCCTCTTCCCCTTCCACCAGGACTCCCCCTTATCAAGTCTTTTGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCCCCTTCCACCAGGACTCCCCCTTATCAAGTCTTTTGAGGAT  300

seq1  TATGCACAGCTTCTCCCACTAAGGCCAGATCAGGCAGACCTCTGCTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAGCTTCTCCCACTAAGGCCAGATCAGGCAGACCTCTGCTATAT  350

seq1  TTGTGCCAGGGGCCTTGGACTGGCCCATGTACTTGCCTGGTTGGTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGGGGCCTTGGACTGGCCCATGTACTTGCCTGGTTGGTGTCTC  400

seq1  AGTCTCTGGGAGCTCCCAGAGGTTTGTATTAGGTGAGACTGCCGGTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGGAGCTCCCAGAGGTTTGTATTAGGTGAGACTGCCGGTATTC  450

seq1  TTATGAGGTTGCTCCCCTCAGTTTCCTCAATCCCTTCCCTAATTCAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGTTGCTCCCCTCAGTTTCCTCAATCCCTTCCCTAATTCAACCA  500

seq1  TAGAGGTTCTCTACTTCAGTTCAATTGTTGGGTATAAGTATCTGCATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTTCTCTACTTCAGTTCAATTGTTGGGTATAAGTATCTGCATCTG  550

seq1  TCTCAGTCAGCTGTTGGTAGGGTCTCTCAAGGGACAGCCATGCCACGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCAGCTGTTGGTAGGGTCTCTCAAGGGACAGCCATGCCACGCTC  600

seq1  CTGTCTGTAAGCATATCATAGCATCAGTAATAGTGTCAGGTCTTGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTAAGCATATCATAGCATCAGTAATAGTGTCAGGTCTTGATGCC  650

seq1  CACCCATGG  659
      |||||||||
seq2  CACCCATGG  659


seq1: chr12_63690791_63691484
seq2: B6Ng01-177O03.g_66_759 (reverse)

seq1  CACTCACGGCCAAGCATTGGACTGAGTTCTTGGACGCCTATGAAACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGGCCAAGCATTGGACTGAGTTCTTGGACGCCTATGAAACAGTT  50

seq1  AGGGAAAGGATTGAAGGAAATGAATGGAAGCCAACCTTATAGGAGGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGATTGAAGGAAATGAATGGAAGCCAACCTTATAGGAGGATCA  100

seq1  ACGTATCAAGTACTCTGGAAACTGGAAGCATTAAGAGACTGAGCTACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATCAAGTACTCTGGAAACTGGAAGCATTAAGAGACTGAGCTACCAA  150

seq1  GCAAAGAGCATACAAAGACTGGTCTGAAGCCTCTAGCACATATGTAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGCATACAAAGACTGGTCTGAAGCCTCTAGCACATATGTAGCAG  200

seq1  AAGAGTGTCTTGTCTGGCCTCAGTGGAAAGGATGTGCCTAATCCTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTCTTGTCTGGCCTCAGTGGAAAGGATGTGCCTAATCCTGTAGA  250

seq1  CATGATGCTCCAGGGAAGGGGGATACCCAGGGTGGGCACCCTCATAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTCCAGGGAAGGGGGATACCCAGGGTGGGCACCCTCATAGTTG  300

seq1  TAAAGGAGAAAGGGAATAGGGGGAAAAACTCTATGCAGAGGAACTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGAAAGGGAATAGGGGGAAAAACTCTATGCAGAGGAACTGGGAA  350

seq1  TAGGGGCAGCAATTGGTGTGTCAATAAATAAAATACTTAATAATAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCAGCAATTGGTGTGTCAATAAATAAAATACTTAATAATAGTGTT  400

seq1  ATTATTAAAATACAATAAAATAATTAATTATGTTAATGCTCATATTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAAATACAATAAAATAATTAATTATGTTAATGCTCATATTTGCA  450

seq1  TTTTCCTAATAAAATTTAAAATAAAAACCAAACAAATATATTGTTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAATAAAATTTAAAATAAAAACCAAACAAATATATTGTTTTGGC  500

seq1  ACTGGAGAGAATAGAAATGTCAAACAGAAGCAGTTCCATGTTTGGAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGAATAGAAATGTCAAACAGAAGCAGTTCCATGTTTGGAATGA  550

seq1  GTAAGTACAATCTATCCCAGAACATACTGAAGAAGAGCTTTAAAAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACAATCTATCCCAGAACATACTGAAGAAGAGCTTTAAAAAGAAG  600

seq1  TGATCATATTGACATAGGTAGAACAAGCATTTGACAGAATCATAGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATATTGACATAGGTAGAACAAGCATTTGACAGAATCATAGTGATA  650

seq1  AAAAACAAAACTTACAACAGTTAACTACAGTGAGAATGGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACTTACAACAGTTAACTACAGTGAGAATGGAATTC  694


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