BAC Information

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BAC

Clone NameB6Ng01-178N24
Chromosome12 (Build37)
Map Location 5,509,917 - 5,676,552
singlet/doubletdoublet
Overlap geneLOC435292
Upstream geneLOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178N24.bB6Ng01-178N24.g
ACCGA005743GA005744
length1,117961
definitionB6Ng01-178N24.b B6Ng01-178N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,509,917 - 5,511,034)(5,675,594 - 5,676,552)
sequence
gaattcattatttttgaattcaacttgcactgctacagctaaggttaatt
attgatttgttttattctgtgattaaagccattagctacgattagcacat
gatgatgtttatgcgtgcttgaatatcagcggccttgctttttatagcag
ggcccaggctaaatgattgctctatgggactgaaatctacaatgggggtt
cacagagtcactggaagtaaccagtggtttgtccttgtgatagaagaata
aacagaatctgattgcttccactaattattcttcttgagcagatactgac
cagaatttacctttaattaaatttggcctctgtcaccatctgattttgaa
tgaccagacttctgagcaggggatagagaatctgagagggctgctatctc
catggactgcagaccctgattttaaatgggaaatagaatgggcttttgct
ctttgaaatggttggaaatgcaactgaaagtccagagcttgtctttatca
gggcacaagtctgctgatgaatgcaagacattgcatctttacagcctctc
tgtgtaggtcataccttttctggcttctccctttctgggggaaggttggc
ctgaacctacctggcaccactgccattgggtttctggatgccaatgttca
gggagcacctcccacctccttctatctgtattctcaccggtcaggactta
tgtagacacaactgtatacagaagtaggaaatgtagcctgacagccaagt
ctgacaaagggagaatcaatttggaaagtcatttggctagagtgggctgt
agtctcttttgctctttaaaagctgggtcaccatctcagcctgtcatttc
tttctatgttagaggaaccgccccatcccaagataaaccctcctgaatgg
ttcctcagtttttctccagaaaccacccgagatgagagcttgagagtagt
gacaagtccctatctcagtgccagcagatctaacacagcggggcccatgg
taacatttgctgagtgaatgactgtccatggaatgaattttgggtgaacc
ggaggctcctgtcacctggcttgaactataatttcttttaagagctcatc
tcttaaccttttccaag

gaattcattcttgtgggaagtgaagatctgagaggagacagaaccaaaag
tcagacgacaagatcccctgccaagactgccagcctctaagaggggagga
aggacgagccccaaaccttggagagccaagttctgcactgtagacttcac
ccacctttgaggacaacagatgaaaatgtccaggaaatgcacatgtggtg
taggagcagaataattcagattctaatttagttcatgggcctgctttctt
acactgacaaacctttcttaaaaataaataaataaaaaataaaataaata
aaaataaaaatgcttttctgatgagagtcaaatggctgaggccaaaaact
ctgtgagattggtctgccctcagcacactaataacgttccttagcaactc
cccctccactcttagggggggataacatctctctctgccaggggagtaga
gaccagagaccaggataacccatggccagggctggaactcagccatggag
tctgattaactgatggtgactagcatagtgactagcagagtgacaagcag
gacacaggcatccagtgccagggcagcactgacctgtgtggggaaatgca
gggaattcagtgagagactcaagctgagccaccaccatgtctcagtgtct
cttcactcctcgtgactctagtaattgatggtaggaggtgaaatgtgaag
ggtcactgtagtctcccatgatcagtgtggcatgacctttgatctgcatg
ttctattttccaacacagccatcaaaatagagccatggaagccacctctc
ccttccccgtccaaccaggcttataggtgtgcgaatgccaggagaggtta
agtcaatgatgaaaagaattggcttttctgagctgggttttttgtttctt
atttgtaaacttgggagctctgcttcagggttttcggaattggggtggaa
agaaatgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5509917_5511034
seq2: B6Ng01-178N24.b_44_1160

seq1  GAATTCATTATTTTTGAATTCAACTTGCACTGCTACAGCTAAGGTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTTGAATTCAACTTGCACTGCTACAGCTAAGGTTAATT  50

seq1  ATTGATTTGTTTTATTCTGTGATTAAAGCCATTAGCTACGATTAGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGTTTTATTCTGTGATTAAAGCCATTAGCTACGATTAGCACAT  100

seq1  GATGATGTTTATGCGTGCTTGAATATCAGCGGCCTTGCTTTTTATAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTTTATGCGTGCTTGAATATCAGCGGCCTTGCTTTTTATAGCAG  150

seq1  GGCCCAGGCTAAATGATTGCTCTATGGGACTGAAATCTACAATGGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGCTAAATGATTGCTCTATGGGACTGAAATCTACAATGGGGGTT  200

seq1  CACAGAGTCACTGGAAGTAACCAGTGGTTTGTCCTTGTGATAGAAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCACTGGAAGTAACCAGTGGTTTGTCCTTGTGATAGAAGAATA  250

seq1  AACAGAATCTGATTGCTTCCACTAATTATTCTTCTTGAGCAGATACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCTGATTGCTTCCACTAATTATTCTTCTTGAGCAGATACTGAC  300

seq1  CAGAATTTACCTTTAATTAAATTTGGCCTCTGTCACCATCTGATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTACCTTTAATTAAATTTGGCCTCTGTCACCATCTGATTTTGAA  350

seq1  TGACCAGACTTCTGAGCAGGGGATAGAGAATCTGAGAGGGCTGCTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGACTTCTGAGCAGGGGATAGAGAATCTGAGAGGGCTGCTATCTC  400

seq1  CATGGACTGCAGACCCTGATTTTAAATGGGAAATAGAATGGGCTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTGCAGACCCTGATTTTAAATGGGAAATAGAATGGGCTTTTGCT  450

seq1  CTTTGAAATGGTTGGAAATGCAACTGAAAGTCCAGAGCTTGTCTTTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATGGTTGGAAATGCAACTGAAAGTCCAGAGCTTGTCTTTATCA  500

seq1  GGGCACAAGTCTGCTGATGAATGCAAGACATTGCATCTTTACAGCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAGTCTGCTGATGAATGCAAGACATTGCATCTTTACAGCCTCTC  550

seq1  TGTGTAGGTCATACCTTTTCTGGCTTCTCCCTTTCTGGGGGAAGGTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGTCATACCTTTTCTGGCTTCTCCCTTTCTGGGGGAAGGTTGGC  600

seq1  CTGAACCTACCTGGCACCACTGCCATTGGGTTTCTGGATGCCAATGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTACCTGGCACCACTGCCATTGGGTTTCTGGATGCCAATGTTCA  650

seq1  GGGAGCACCTCCCACCTCCTTCTATCTGTATTCTCACCGGTCAGGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACCTCCCACCTCCTTCTATCTGTATTCTCACCGGTCAGGACTTA  700

seq1  TGTAGACACAACTGTATACAGAAGTAGGAAATGTAGCCTGACAGCCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACACAACTGTATACAGAAGTAGGAAATGTAGCCTGACAGCCAAGT  750

seq1  CTGACAAAGGGAGAATCAATTTGGAAAGTCATTTGGCTAGAGTGGGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAGGGAGAATCAATTTGGAAAGTCATTTGGCTAGAGTGGGCTGT  800

seq1  AGTCTCTTTTGCTCTTTAAAAGCTGGGTCACCATCTCAGCCTGTCATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTTGCTCTTTAAAAGCTGGGTCACCATCTCAGCCTGTCATTTC  850

seq1  TTTCTATGTTAGAGGAACCGCCCCATCCCAAGATAAACCCTCCTGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTTAGAGGAACCGCCCCATCCCAAGATAAACCCTCCTGAATGG  900

seq1  -TCCTCAG-TTTTCTCCAGAAACCA-CCGAGATGAGAGCTTGAGAGTAGT  947
       ||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCTCAGTTTTTCTCCAGAAACCACCCGAGATGAGAGCTTGAGAGTAGT  950

seq1  GACAAGTCCCTATCTCAGTGCCAGCAGATCTAACACAGCGGGGCCCATGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCCCTATCTCAGTGCCAGCAGATCTAACACAGCGGGGCCCATGG  1000

seq1  TAAACATTTGCTGAGTGAATGACTGTCCAATTGAATG-ATTTTTGGTGAA  1046
      | |||||||||||||||||||||||||| || ||||| ||||| ||||||
seq2  T-AACATTTGCTGAGTGAATGACTGTCC-ATGGAATGAATTTTGGGTGAA  1048

seq1  CTGAAGGCTCCTGTCACCTGGCTTTGAC-ATATATTCCTTTTAGAAGGCT  1095
      | | ||||||||||||||||||||  || |||  ||| ||| |||  |||
seq2  CCGGAGGCTCCTGTCACCTGGCTTGAACTATAATTTCTTTTAAGA--GCT  1096

seq1  CATCTCTTTACCCTTTTCACAAG  1118
      |||||| ||| ||||||| ||||
seq2  CATCTC-TTAACCTTTTC-CAAG  1117


seq1: chr12_5675594_5676552
seq2: B6Ng01-178N24.g_68_1027 (reverse)

seq1  TTTCATTTCTTTCCA-CCCAATTCTGAAAACCCTGAAGCAGAGCT-CCAA  48
      ||||||||||||||| |||||||| |||||||||||||||||||| ||||
seq2  TTTCATTTCTTTCCACCCCAATTCCGAAAACCCTGAAGCAGAGCTCCCAA  50

seq1  GTTTACAAATAAGAAAATAAAAAACCAGCTCAGAAAAGCCAATTCTTTTC  98
      ||||||||||||||||  ||||| ||||||||||||||||||||||||||
seq2  GTTTACAAATAAGAAACAAAAAACCCAGCTCAGAAAAGCCAATTCTTTTC  100

seq1  TTCATTGACTTAACCTCTCCTGGCCATTCGCACACCTATAAGCCTGGTTG  148
       |||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATCATTGACTTAACCTCTCCTGG-CATTCGCACACCTATAAGCCTGGTT-  148

seq1  GGACGGGGAAGGGAGAGGTGGCTTCCATGGCTCTATTTTGATGGCTGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGGAAGGGAGAGGTGGCTTCCATGGCTCTATTTTGATGGCTGTGT  198

seq1  TGGAAAATAG-ACATGCAGATCAAAGGTCATGCCACACTGATCATGGGAG  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAGAACATGCAGATCAAAGGTCATGCCACACTGATCATGGGAG  248

seq1  ACTACAGTGACCCTTCACATTTCACCTCCTACCATCAATTACTAGAGTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTGACCCTTCACATTTCACCTCCTACCATCAATTACTAGAGTCA  298

seq1  CGAGGAGTGAAGAGACACTGAGACATGGTGGTGGCTCAGCTTGAGTCTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGTGAAGAGACACTGAGACATGGTGGTGGCTCAGCTTGAGTCTCT  348

seq1  CACTGAATTCCCTGCATTTCCCCACACAGGTCAGTGCTGCCCTGGCACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTCCCTGCATTTCCCCACACAGGTCAGTGCTGCCCTGGCACTG  398

seq1  GATGCCTGTGTCCTGCTTGTCACTCTGCTAGTCACTATGCTAGTCACCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGTGTCCTGCTTGTCACTCTGCTAGTCACTATGCTAGTCACCAT  448

seq1  CAGTTAATCAGACTCCATGGCTGAGTTCCAGCCCTGGCCATGGGTTATCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATCAGACTCCATGGCTGAGTTCCAGCCCTGGCCATGGGTTATCC  498

seq1  TGGTCTCTGGTCTCTACTCCCCTGGCAGAGAGAGATGTTATCCCCCCCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGGTCTCTACTCCCCTGGCAGAGAGAGATGTTATCCCCCCCTA  548

seq1  AGAGTGGAGGGGGAGTTGCTAAGGAACGTTATTAGTGTGCTGAGGGCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGGGGGAGTTGCTAAGGAACGTTATTAGTGTGCTGAGGGCAGA  598

seq1  CCAATCTCACAGAGTTTTTGGCCTCAGCCATTTGACTCTCATCAGAAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCACAGAGTTTTTGGCCTCAGCCATTTGACTCTCATCAGAAAAG  648

seq1  CATTTTTATTTTTATTTATTTTATTTTTTATTTATTTATTTTTAAGAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTTTTATTTATTTTATTTTTTATTTATTTATTTTTAAGAAAG  698

seq1  GTTTGTCAGTGTAAGAAAGCAGGCCCATGAACTAAATTAGAATCTGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAGTGTAAGAAAGCAGGCCCATGAACTAAATTAGAATCTGAATT  748

seq1  ATTCTGCTCCTACACCACATGTGCATTTCCTGGACATTTTCATCTGTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCCTACACCACATGTGCATTTCCTGGACATTTTCATCTGTTGT  798

seq1  CCTCAAAGGTGGGTGAAGTCTACAGTGCAGAACTTGGCTCTCCAAGGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGGTGGGTGAAGTCTACAGTGCAGAACTTGGCTCTCCAAGGTTT  848

seq1  GGGGCTCGTCCTTCCTCCCCTCTTAGAGGCTGGCAGTCTTGGCAGGGGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCGTCCTTCCTCCCCTCTTAGAGGCTGGCAGTCTTGGCAGGGGAT  898

seq1  CTTGTCGTCTGACTTTTGGTTCTGTCTCCTCTCAGATCTTCACTTCCCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCGTCTGACTTTTGGTTCTGTCTCCTCTCAGATCTTCACTTCCCAC  948

seq1  AAGAATGAATTC  959
      ||||||||||||
seq2  AAGAATGAATTC  960


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