BAC Information

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BAC

Clone NameB6Ng01-179P09
Chromosome12 (Build37)
Map Location 44,820,098 - 44,821,211
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059
Downstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P09.bB6Ng01-179P09.g
ACCGA006532GA006533
length1,113729
definitionB6Ng01-179P09.b B6Ng01-179P09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccagcttagactacacagtgtgttccaggtcagccagaga
tatagaggaagaacttgtcttgaaaataaataaacattcataaaaaaaaa
acaactcaaaaatcaacagtaaaaagaaacttaaaactttaaaagtgcta
acaaatacagtacatagtataaggttcattaagaaaaatataggtaaaat
gtactaagtaataaataaaaagccaaaataggaccaccacaataaaaact
taggtcaacagaaaaattatatcctttaaaaacagttaagaaagctaagg
attactgggcagtggtggtgcatgcctttaatcccagcacgtgggaggca
gaagcaggcagatctctgagtttcaggccagcctgctctacaaagagagt
gagttccaaatcagctagggctgcatagagaaaccgtgtctcaaaaaaaa
ataaaaaataaaataaaataaaataaagctaagaattagaagtatatagg
acaactgtaccactcaggagaagagtctgggagattggcagagagatcgc
aagtttgtaaatggttctgctttatgctgcttctacacagtaagaccctg
tctcaagaaaggatggggttgggaagagaagagagacaaaagtataccaa
tactacaaaaaatctttctacaggcaaaggaaataaaatattctcccaat
acacttaaaacgggggcaaaaataatactgttatcaaaaatgtgatggct
tcggttagcgagaattttattaaggatttttgcatcgatattcataagag
aaattggtctgaagttctctctctttgttggatctttctgtggtttaggt
atcagagtaatagtggcttcataaaatgagtttgggtagagtaccttcta
cttctatcttgtgaaatagtttgtgcagaactggaattagatcttctttg
aaagttctgatagaactctgcactaaacccatctgggtcctggctttttt
ggctgggagactatttaataactgcttctattcttaggatatgcaaagtt
agagctgagattaaggatgaccatgtagacacctagccatatccggggaa
tccattcccatat

gaattcttggcaatcgttgagacaggctacctatgtccaccttgctacat
ctttagaagaaattactcttgtttaacaagtatttccctgtttcaggggt
aaaatgtgtatcttcctgttcacagaaacatttgagaaacctgtgaatct
tactttatgagttcctgtttatgtttttgtgttcatttacaaatggggct
ggatatggctcctacaggttctctctcccctttgttgggcatttcagtta
acgtcatccctgtttggtcatgggagcctctgggtttcctggcacctggg
actttctggtggctaccctcagttctccatcccccattgctccacacttc
tgttcaatttcctacatatgcaactggagccatgggtccctacatgtgtt
ttctttggtcggtgatttggtccctaggagctcagggggtctggttgttt
gatattgttgttctttcaatggggttgcaaacccctctacctcctttaat
cttcagtccttcccctaacttctccattggaattctcatgctctgtccga
tgtttggctgcatacatccacatctgtatttgtcaggatctggcaaagca
tctcagggaacaactctatcaggctcctgtcagtaagcactttcttggca
tcagcaatagtgtctggggtttgggtgggggagcacctttcatagaagca
gggggggggtgcaggaaggggggaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44820098_44821211
seq2: B6Ng01-179P09.b_44_1155

seq1  GAATTCAAGGCCAGCTTAGACTACACAGTGTGTTCCAGGTCAGCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCTTAGACTACACAGTGTGTTCCAGGTCAGCCAGAGA  50

seq1  TATAGAGGAAGAACTTGTCTTGAAAATAAATAAACATTCATAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGAAGAACTTGTCTTGAAAATAAATAAACATTCATAAAAAAAAA  100

seq1  ACAACTCAAAAATCAACAGTAAAAAGAAACTTAAAACTTTAAAAGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAAAATCAACAGTAAAAAGAAACTTAAAACTTTAAAAGTGCTA  150

seq1  ACAAATACAGTACATAGTATAAGGTTCATTAAGAAAAATATAGGTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACAGTACATAGTATAAGGTTCATTAAGAAAAATATAGGTAAAAT  200

seq1  GTACTAAGTAATAAATAAAAAGCCAAAATAGGACCACCACAATAAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGTAATAAATAAAAAGCCAAAATAGGACCACCACAATAAAAACT  250

seq1  TAGGTCAACAGAAAAATTATATCCTTTAAAAACAGTTAAGAAAGCTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAACAGAAAAATTATATCCTTTAAAAACAGTTAAGAAAGCTAAGG  300

seq1  ATTACTGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACGTGGGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACGTGGGAGGCA  350

seq1  GAAGCAGGCAGATCTCTGAGTTTCAGGCCAGCCTGCTCTACAAAGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCAGATCTCTGAGTTTCAGGCCAGCCTGCTCTACAAAGAGAGT  400

seq1  GAGTTCCAAATCAGCTAGGGCTGCATAGAGAAACCGTGTCTCAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAATCAGCTAGGGCTGCATAGAGAAACCGTGTCTCAAAAAAAA  450

seq1  ATAAAAAATAAAATAAAATAAAATAAAGCTAAGAATTAGAAGTATATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAAATAAAATAAAATAAAGCTAAGAATTAGAAGTATATAGG  500

seq1  ACAACTGTACCACTCAGGAGAAGAGTCTGGGAGATTGGCAGAGAGATCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTACCACTCAGGAGAAGAGTCTGGGAGATTGGCAGAGAGATCGC  550

seq1  AAGTTTGTAAATGGTTCTGCTTTATGCTGCTTCTACACAGTAAGACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTAAATGGTTCTGCTTTATGCTGCTTCTACACAGTAAGACCCTG  600

seq1  TCTCAAGAAAGGATGGGGTTGGGAAGAGAAGAGAGACAAAAGTATACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAAAGGATGGGGTTGGGAAGAGAAGAGAGACAAAAGTATACCAA  650

seq1  TACTACAAAAAATCTTTCTACAGGCAAAGGAAATAAAATATTCTCCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAAAATCTTTCTACAGGCAAAGGAAATAAAATATTCTCCCAAT  700

seq1  ACACTTAAAACGGGGGCAAAAATAATACTGTTATCAAAAATGTGATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAAACGGGGGCAAAAATAATACTGTTATCAAAAATGTGATGGCT  750

seq1  TCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGAG  800

seq1  AAATTGGTCTGAAGTTCTCTCTCTTTGTTGGATCTTTCTGTGGTTTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTCTGAAGTTCTCTCTCTTTGTTGGATCTTTCTGTGGTTTAGGT  850

seq1  ATCAGAGTAATAGTGGCTTCATAAAATGAG-TTGGGTAGAGTACCTTCTA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCAGAGTAATAGTGGCTTCATAAAATGAGTTTGGGTAGAGTACCTTCTA  900

seq1  CTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTG  950

seq1  -AAGGTCTGATAGAACTCTGCACTAAACCCATCT-GGTCCTGGGCTTTTT  997
       ||| ||||||||||||||||||||||||||||| ||||||||   ||||
seq2  AAAGTTCTGATAGAACTCTGCACTAAACCCATCTGGGTCCTGG--CTTTT  998

seq1  TTGGCTGGGAGACTA-TTAATAACTGCTTCTATTTCTTTAGGGGATATGG  1046
      ||||||||||||||| |||||||||||||||| |||||    |||||| |
seq2  TTGGCTGGGAGACTATTTAATAACTGCTTCTA-TTCTT---AGGATAT-G  1043

seq1  CAAAGTTTAGAGCTGAGATAAAAGGATGGACCATGTAGACA-CTAG-CAT  1094
      ||||| |||||||||||||  |||||| ||||||||||||| |||| |||
seq2  CAAAG-TTAGAGCTGAGAT-TAAGGAT-GACCATGTAGACACCTAGCCAT  1090

seq1  ATCCGGGG-ATCCA-TCCCATA  1114
      |||||||| ||||| |||||||
seq2  ATCCGGGGAATCCATTCCCATA  1112


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